Antxr2 (ANTXR cell adhesion molecule 2) - Rat Genome Database

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Gene: Antxr2 (ANTXR cell adhesion molecule 2) Chinchilla lanigera
Analyze
Symbol: Antxr2
Name: ANTXR cell adhesion molecule 2
RGD ID: 8962295
Description: INVOLVED IN collagen fibril organization (ortholog); single fertilization (ortholog); uterus development (ortholog); ASSOCIATED WITH ankylosing spondylitis (ortholog); anthrax disease (ortholog); congenital myopathy 1A (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: anthrax toxin receptor 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554334,212,729 - 4,345,066 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554334,212,729 - 4,345,611 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Antxr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554334,212,729 - 4,345,066 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554334,212,729 - 4,345,611 (-)NCBIChiLan1.0ChiLan1.0
ANTXR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38479,901,146 - 80,073,472 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl479,901,146 - 80,125,454 (-)EnsemblGRCh38hg38GRCh38
GRCh37480,822,300 - 80,994,626 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36481,045,749 - 81,213,277 (-)NCBINCBI36Build 36hg18NCBI36
Build 34481,183,903 - 81,351,119NCBI
Celera478,122,440 - 78,287,976 (-)NCBICelera
Cytogenetic Map4q21.21NCBI
HuRef476,572,333 - 76,737,910 (-)NCBIHuRef
CHM1_1480,799,284 - 80,970,975 (-)NCBICHM1_1
T2T-CHM13v2.0483,237,562 - 83,403,767 (-)NCBIT2T-CHM13v2.0
Antxr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39598,032,547 - 98,178,876 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl598,030,642 - 98,178,902 (-)EnsemblGRCm39 Ensembl
GRCm38597,884,688 - 98,031,017 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl597,882,783 - 98,031,043 (-)EnsemblGRCm38mm10GRCm38
MGSCv37598,313,707 - 98,459,981 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36598,124,990 - 98,271,264 (-)NCBIMGSCv36mm8
Celera595,232,772 - 95,364,676 (-)NCBICelera
Cytogenetic Map5E3NCBI
cM Map547.77NCBI
Antxr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81411,845,774 - 11,986,166 (+)NCBIGRCr8
mRatBN7.21411,541,718 - 11,682,110 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1411,541,772 - 11,682,094 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1411,508,043 - 11,649,779 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01412,807,886 - 12,949,630 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01411,503,854 - 11,644,105 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01413,191,716 - 13,331,286 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1413,192,347 - 13,274,978 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01413,133,302 - 13,273,123 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41412,875,632 - 13,107,975 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1411,613,633 - 11,752,440 (+)NCBICelera
Cytogenetic Map14p22NCBI
ANTXR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2349,991,825 - 50,152,945 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1450,182,517 - 50,343,402 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0444,124,282 - 44,284,949 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1449,972,472 - 50,132,740 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl449,972,472 - 50,132,738 (+)Ensemblpanpan1.1panPan2
ANTXR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1324,143,407 - 4,302,194 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl324,148,310 - 4,302,071 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3237,578,921 - 37,738,121 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0324,166,040 - 4,325,988 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl324,167,895 - 4,325,767 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1324,206,174 - 4,365,346 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0324,103,843 - 4,262,993 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03235,701,505 - 35,861,446 (+)NCBIUU_Cfam_GSD_1.0
Antxr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244052858,013,156 - 8,091,188 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367491,936,449 - 2,015,200 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367491,936,307 - 2,014,452 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANTXR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8137,618,616 - 137,878,333 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18137,728,849 - 137,878,336 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28146,872,430 - 147,020,217 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ANTXR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1728,345,849 - 28,499,818 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl728,375,899 - 28,499,522 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660376,795,315 - 6,949,937 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Antxr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475710,972,692 - 11,125,898 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475710,972,976 - 11,123,103 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000008037   ⟹   ENSCLAP00000007917
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554334,212,729 - 4,345,066 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000008038   ⟹   ENSCLAP00000007918
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554334,243,225 - 4,344,592 (-)Ensembl
RefSeq Acc Id: XM_005388217   ⟹   XP_005388274
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554334,212,729 - 4,345,611 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005388274 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000007917
  ENSCLAP00000007917.1
  ENSCLAP00000007918.1
Reference Protein Sequences
RefSeq Acc Id: XP_005388274   ⟸   XM_005388217
- UniProtKB: A0A8C2UZ65 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000007917   ⟸   ENSCLAT00000008037
RefSeq Acc Id: ENSCLAP00000007918   ⟸   ENSCLAT00000008038
Protein Domains
VWFA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005549 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000008037 ENTREZGENE
  ENSCLAT00000008037.1 UniProtKB/TrEMBL
  ENSCLAT00000008038.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.410 UniProtKB/TrEMBL
InterPro Anthrax_toxin_rcpt UniProtKB/TrEMBL
  Anthrax_toxin_rcpt_C UniProtKB/TrEMBL
  Anthrax_toxin_rcpt_extracel UniProtKB/TrEMBL
  VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
NCBI Gene Antxr2 ENTREZGENE
PANTHER ANTHRAX TOXIN RECEPTOR UniProtKB/TrEMBL
  PTHR16059:SF13 UniProtKB/TrEMBL
Pfam Ant_C UniProtKB/TrEMBL
  Anth_Ig UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
PIRSF Anthrax_toxin_receptor_2 UniProtKB/TrEMBL
PROSITE VWFA UniProtKB/TrEMBL
SMART VWA UniProtKB/TrEMBL
Superfamily-SCOP SSF53300 UniProtKB/TrEMBL
UniProt A0A8C2UZ65 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UZR4_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-15 Antxr2  ANTXR cell adhesion molecule 2    anthrax toxin receptor 2  Symbol and/or name change 5135510 APPROVED