| Gene: Pom121l2 (POM121 transmembrane nucleoporin like 2) Chinchilla lanigera |
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Analyze |
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| Symbol: |
Pom121l2 |
| Name: |
POM121 transmembrane nucleoporin like 2 |
| RGD ID: |
8958384 |
| Description: |
ASSOCIATED WITH genetic disease (ortholog) |
| Type: |
protein-coding
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| RefSeq Status: |
MODEL |
| Previously known as: |
POM121 transmembrane nucleoporin-like 2; POM121-like protein 2 |
| RGD Orthologs |
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| Alliance Genes |
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| More Info |
more info ...
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| More Info |
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| Latest Assembly: |
ChiLan1.0 - Chinchilla ChiLan1.0 Assembly |
| NCBI Annotation Information: |
Annotation category: partial on reference assembly |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 | NW_004955465 | 13,175,383 - 13,178,722 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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| JBrowse: |
View Region in Genome Browser (JBrowse)
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| Model |
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Imported Disease Annotations - ClinVar
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References
Genomics
Comparative Map Data
Pom121l2
(Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 | NW_004955465 | 13,175,383 - 13,178,722 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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POM121L2
(Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 6 | 27,308,377 - 27,312,273 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 6 | 27,285,903 - 27,312,273 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 6 | 27,276,156 - 27,280,052 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 6 | 27,384,821 - 27,388,776 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 6 | 28,882,843 - 28,886,012 (-) | NCBI | | Celera | | | Cytogenetic Map | 6 | p22.1 | NCBI | | | | | HuRef | 6 | 27,084,731 - 27,087,900 (-) | NCBI | | HuRef | | | CHM1_1 | 6 | 27,279,168 - 27,282,337 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 6 | 27,177,485 - 27,181,380 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Pom121l2
(Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 13 | 22,165,351 - 22,172,904 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 13 | 22,165,364 - 22,172,904 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 13 | 21,981,181 - 21,988,734 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 13 | 21,981,194 - 21,988,734 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 13 | 22,073,050 - 22,080,603 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 13 | 21,988,646 - 21,996,199 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 13 | 22,253,113 - 22,260,670 (+) | NCBI | | Celera | | | Cytogenetic Map | 13 | A3.1 | NCBI | | | | | cM Map | 13 | 8.11 | NCBI | | | | |
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Pom121l2
(Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 17 | 47,241,917 - 47,249,231 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 17 | 42,546,144 - 42,553,447 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 17 | 42,546,326 - 42,553,423 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 17 | 44,595,965 - 44,603,240 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 17 | 49,355,040 - 49,362,319 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 17 | 43,845,984 - 43,853,265 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 17 | 44,588,022 - 44,595,347 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 17 | 44,588,045 - 44,595,323 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 17 | 58,875,434 - 58,882,517 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 17 | 50,179,184 - 50,186,917 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 17 | 53,907,490 - 53,915,480 (+) | NCBI | | Celera | | | Cytogenetic Map | 17 | p11 | NCBI | | | | |
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LOC100979681
(Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 5 | 41,953,771 - 41,957,571 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 6 | 37,955,299 - 37,959,099 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 6 | 27,141,342 - 27,145,132 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 6 | 27,817,665 - 27,820,859 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 6 | 27,817,665 - 27,820,772 (-) | Ensembl | panpan1.1 | | panPan2 | |
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LOC611386
(Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 35 | 24,672,617 - 24,682,277 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 35 | 24,528,715 - 24,538,375 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 35 | 26,883,577 - 26,893,693 (-) | NCBI | | ROS_Cfam_1.0 | | | UMICH_Zoey_3.1 | 35 | 24,635,600 - 24,645,544 (-) | NCBI | | UMICH_Zoey_3.1 | | |
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LOC110599301
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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POM121L2
(Sus scrofa - pig) |
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POM121L2
(Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 17 | 45,208,541 - 45,213,032 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 17 | 45,209,508 - 45,212,612 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666044 | 26,994,612 - 26,998,614 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Expression
Sequence
| RefSeq Acc Id: |
XM_005399007 ⟹ XP_005399064 |
| Type: |
CODING |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source |
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ChiLan1.0 | NW_004955465 | 13,175,383 - 13,178,722 (-) | NCBI |
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| Sequence: |
CGCGCGCCCCGCGGACCCCGCGCCCCGCCGTCCCTCGCGCCGGGTCCCAACCGTCCTCCAGGCG
GTTCCGCAGCCGCTGGGAGCGCAGCGGCCGCACCCTCGCCGCGCCATGGGCTGTGTCCTGGGCC
GGCCGCCGGCTTTGCCGCGGTCCCCACCCGGCCACCGCGACCTGCTCGAGGGCCCGGGAGCGCG
CGCCCAGCCCGTGTACCGAGTGGGCCGCGTCCAGCAGGTGCTGCGCGCCCAGCACGTCCTCCGC
GCCCACGCCGCCCCGCTGCCGCGCCGCAGCCCCTGTCCGGGAGCGGGCCCCGGTCCCGGTCCTC
CTTCCCCGGCCGCGGCGGCCGGCTGGGACGGCTTCCTGTGGCGCACCATCTGGTCCCTGCGGCA
CCCGGGGGCCGTGCGCAGCCCCGTGACCGTCCAGCTCTGCCCGCCGGAGCGCAGAGGGCCCGCG
TCCCTGGCGTCGGCGCCTGAGATCCACTGTGCGGGGCCCTCGGAGCCCGAGCTGCGCGCCCCGC
GAGAGCCCGTGGGCTCGGACCCGCACGGCGAGGGCGTCGCGGCCCGTCCGTCGGCCTTCACGCC
CCTGGCGAGGCGGGGCGCCCTCGTCGCCTTCGTGCCCAGGCCCGGGCCCCTACCGGGGCCCCTC
GGCGCCCGCAGCCGGGTCCCCCGCGCCCCCGCGCGCTCCGCGGCCTCGCTCGGCGCCAAGAGGA
ACGCGATCTGCAGCTCCTACAGCTCCACCCGGCCCGGCCCCGCGACTTCCAAGAGAGGCCTCCC
CAGGCTTTCACCCGAGATCCCCGAGTGGCCGCTGCGAAAGAGAGGAAAAGGCCGTCCTCCGTCC
GTGCGCCCGCCCGCCGCGCGCCGCGCGTCCTCGAGAACAGCCGGGCGGCCCGGGCCGCCAAGGG
AGAAGACCCCGCCGCTGCCACCGCGCCCTGGGGACCTGCTGCCCGAGACCGCACCTGCCGAGCG
TGGCTCTGACGAGGACTGCACCTTGGGGAAAAAAGCCGGGCAGGATGCCACCGAGGCCGCCGCG
GACTCCACCCCCGAGGCCCGTCCTGGTGTCCGACCCCACGCGTGCGTCGCTCTGCCCGTCCCAG
GGACAGCAGCCCCCGGCGCAGACCCACCGCTGGACAGCCGAGAGAAGACGTCTCCAGGCCCGCC
CGCGCCGCTGGGGTACGCACGGTCAGAAGCCCCGCCCGCCCGCTCTCCAGGCTCCGTGCCAGCG
GCTGCGCCCAGGTCACCCGGCGCTGTCACTGCCCGGCCAGCTCCCAGCTTTCCCGCTGCCGAGT
CAGCCCTGCCTCCAGACCCACCTGTCACTCCCCCCGCTGCACCCTCCTTACAAAGCACTGTGTT
TGGGGTGAGGGGGAGCCCAGCACCCCACCTTCCTGCTCCCGCACCTCCCGCTGCAACTTCTGCT
GACTCCCTGTTAAAGCCAGTTTTGGGGTCCCTTCCCGGTAGTGAGACGGCAGTCCCCTCAGATC
CCAGAATCGAGGTCGCAGCAGCACCGTCTTTGGGGGCCTCCGGCTGCACAGCTCCGTGCGTCCT
GACGCCGCCGGCCTTCCAGCCTGTCTTCAGGGGCGCCCTGAGCCCTGCGCCTGCGGAAGCTGCT
TTCTCCCCCGGGCAGCTCCCTCCCCCGCCGGCCCCTGTCGCAGCTCAGCTCTCCCGTGGCCTGG
TCCCGTCCACCTCCCCGGCTGGCACATGCCAAGACCCTGCTGTCCAGCTGCCTCACGATTCTAG
CCGAGTGGTCCCAGGCTTTATACCCCTGCCGCACGCTGGGGCAACTGGCTTCTCCCCAGAAACC
AGCCAGATTTTCCCGTCCTGGCAGCCTCCTTCCCTCCCGGCTGTCCACCAAGTTGCTGTTAGTG
GCCAAGTTCCTGGTGCTGCCCAGGTCACCGCTGGCGGAAGCGCTGCTGATTGTAGGCGTGCGCA
GAGCCCTGTGTCCGCCTCCACCCTTGTATGCGCCCCCCCACCCGCACTGTCGCTCAGCCTCTCC
AGCCCGACCCCTGCACCCCCTGGAGTCATGCCCCAGCCTGCATCTGGGGCCAAAGATGGGCAGA
AAGAAGGCGCCCCCCAGCCGGTTCTCACCCCAAGCTTCAGTACCCCTCTCCTTTCTGGGAACTG
GGCAGTGGTGCCTCCAGCCCCCGGGTCAACGCTGGCCAGGCCCAGGCAGAGCATTTCCACACAG
GCGGCTCTTGGGGGCGGGGTGCTCTCAGCCCCCACTTCGCAGGCCCCCACTGCACAGGTCCCTG
CACCCTGCCCACTAGGGTTTGCCTTTGGCCAGGCAAGTCCCGCCCCTGGCTTTGGGGCTGCCAC
CCGGAGCCAGAGTGGGGCTGGGAGCCCAGTGTTTGGCAGCATGGCCCCTCGACCTTTTGCCTTT
GGAGGGTCAGTGACCCCTATGGAGTGTGGGGAGCCAGGGGTCACTGCGAGCACCCACAGAGACA
GCTCCACCTCTGGGGTTCTCAGCGTGGGAGGAACAGTGCGGAGTGGGGTCCCCAGGACTGGGAC
CGCCTTTGAAAAAGGGCCGGGCCAGAACCCTCAGCGCCTTCCCAGCCAGGCCTTGCTTTCCTCC
TTGGGGAGGGCCGGCTCTTCTGCAAGGAAGCCTGCTCCTGGGGTCCCTTCCGTCGCCCCCTTTG
CACAGACCAGCCGGCTCCCGGGTCCAGCAAAGCCGGGCAGCAGCGTGGGCTCTGGGGTGGGCTC
ACCGCCTTCTCAGGGCTCTGTCAGCAGGAACAGGGATCCTTTCAGGTCTCCAGCCTGTTTGTTT
TCCATTGGTACAAATCCAAAAAGTCCAAGGAGTCGGGAGCAAAGACGTTCCCAGAGGCATCACG
CCCACAGGAAATAGCGGCTTTCTCTCTCACCCGGAGCCCAGTAGGACCTCAGCACTGCTGTGGA
GAGCCTCAGCCTCTCCCGTCTTCTAAATGGAATGTCCTTAGACCTGAAGAGAAAGCGCCGGGTG
TCTCCTGGGCTCCTAATTCACACCCTTTAGGGTGGGGCAGGACCATCAAACCACTGAGCGGTGA
TGCCGAGTGACCCCTGCCCCTCCTGTGTGCCAAGGCCGGCACTGCCTCCTGCTTTTCCGTGGCA
GCCCGGTGCTCTAGCATCTTTGGGATGAGGACCCTAACCTCGGCTTTTATTTGGCCCTAGAAAA
TGGTTCCCCATCTTTGGTCCCGTGGGTGTGGATTTCTCATTTCTGGCCTCTTGGTCCTCAGTGC
ATTCTTGAGTTTTGGGGGTAGTTTGACCCAGAGGCACCTTTCTCAGAAGATCAGTGGGCAGCCC
CAGGGCACTGCTCTTGTTGAGCTGCTTCCCCCACCACACTGTTTGAGTTCACCTTTACCCCAAA
GAGATGACAGGCCAAACCCATGAGCTCTGTGCCAATTTAACCCGTGAAAGATGAGTGGGTGAGA
ACTTGGCCTGTCCGACCCCAGCACCATTCCTCATCCCAACACAGGGCCGTCGGACCAGCTTCCC
TGTGAGCTTGGAGCGGGCAGGGCGCCCCGCGGGTCACCACCACCCGCTTGGCCACACTCCACAG
TCCACAGAGACTTGTTCTCTGCACCCTGCTGGGTGCTCCTGCAGAGCTTCCTGTCAGCTCCACT
TGGAAGGGTGGCTTCTTGGGGTGCAGCAGCGCCTGGCAAGAGACAGGGAGGAGGTACCATGCTG
CTGCTTCTGCACTGTGGTCGGACCCCAGATGTGCATTTCAGTGACCTGTCGGGGCCCTCTCTCC
ACACACCTCAGCCAGAGAGGGTGGCAGGGGAGCAGCCCTCGGGCCTGGCCGAGCCGGGAAAGGG
AAAACAGCGGGCACCTGGGTGGGGCAGGGGAGGCCCCGAGGGAGCGGCGACACGTTCTGGTGCC
CTTCTGCCATCCCGACCCACTCCAAGGCAAGAATGACTTCCCAAGTAAGTTCATCACCTGTCTC
CTACTTCACGAATGTCTTGGAAGAGGTCTAACTGGAAATAAACGCAATACTAAGCTGAAGGATA
AAATAAAAATAAATTATTGAAATAAA
hide sequence
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| RefSeq Acc Id: |
XP_005399064 ⟸ XM_005399007 |
| - Sequence: |
MGCVLGRPPALPRSPPGHRDLLEGPGARAQPVYRVGRVQQVLRAQHVLRAHAAPLPRRSPCPGA
GPGPGPPSPAAAAGWDGFLWRTIWSLRHPGAVRSPVTVQLCPPERRGPASLASAPEIHCAGPSE
PELRAPREPVGSDPHGEGVAARPSAFTPLARRGALVAFVPRPGPLPGPLGARSRVPRAPARSAA
SLGAKRNAICSSYSSTRPGPATSKRGLPRLSPEIPEWPLRKRGKGRPPSVRPPAARRASSRTAG
RPGPPREKTPPLPPRPGDLLPETAPAERGSDEDCTLGKKAGQDATEAAADSTPEARPGVRPHAC
VALPVPGTAAPGADPPLDSREKTSPGPPAPLGYARSEAPPARSPGSVPAAAPRSPGAVTARPAP
SFPAAESALPPDPPVTPPAAPSLQSTVFGVRGSPAPHLPAPAPPAATSADSLLKPVLGSLPGSE
TAVPSDPRIEVAAAPSLGASGCTAPCVLTPPAFQPVFRGALSPAPAEAAFSPGQLPPPPAPVAA
QLSRGLVPSTSPAGTCQDPAVQLPHDSSRVVPGFIPLPHAGATGFSPETSQIFPSWQPPSLPAV
HQVAVSGQVPGAAQVTAGGSAADCRRAQSPVSASTLVCAPPPALSLSLSSPTPAPPGVMPQPAS
GAKDGQKEGAPQPVLTPSFSTPLLSGNWAVVPPAPGSTLARPRQSISTQAALGGGVLSAPTSQA
PTAQVPAPCPLGFAFGQASPAPGFGAATRSQSGAGSPVFGSMAPRPFAFGGSVTPMECGEPGVT
ASTHRDSSTSGVLSVGGTVRSGVPRTGTAFEKGPGQNPQRLPSQALLSSLGRAGSSARKPAPGV
PSVAPFAQTSRLPGPAKPGSSVGSGVGSPPSQGSVSRNRDPFRSPACLFSIGTNPKSPRSREQR
RSQRHHAHRK
hide sequence
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Additional Information
External Database Links
| Database |
Acc Id |
Source(s) |
| NCBI Gene |
Pom121l2 |
ENTREZGENE |
Nomenclature History
| Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
| 2016-08-16 |
Pom121l2 |
POM121 transmembrane nucleoporin like 2 |
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POM121 transmembrane nucleoporin-like 2 |
Symbol and/or name change |
5135510 |
APPROVED |
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