Snx25 (sorting nexin 25) - Rat Genome Database

Name: Snx25
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Snx25 (sorting nexin 25) Chinchilla lanigera

Analyze

Symbol:

Snx25

Name:

sorting nexin 25

RGD ID:

8953266

Description:

ENCODES a protein that exhibits type I transforming growth factor beta receptor binding (ortholog); INVOLVED IN negative regulation of transforming growth factor beta receptor signaling pathway (ortholog); receptor catabolic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); dilated cardiomyopathy (ortholog); genetic disease (ortholog); FOUND IN endosome (ortholog); intracellular membrane-bounded organelle (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

sorting nexin-25

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SNX25 (sorting nexin 25)	NCBI	Ortholog
Mus musculus (house mouse):	Snx25 (sorting nexin 25)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Snx25 (sorting nexin 25)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SNX25 (sorting nexin 25)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SNX25 (sorting nexin 25)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Snx25 (sorting nexin 25)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SNX25 (sorting nexin 25)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SNX25 (sorting nexin 25)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Snx25 (sorting nexin 25)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	23,676,002 - 23,787,308 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	23,678,301 - 23,787,256 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

dilated cardiomyopathy (ISO)

genetic disease (ISO)

Herpes Simplex Encephalitis 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of transforming growth factor beta receptor signaling pathway (ISO)

receptor catabolic process (ISO)

Cellular Component

endosome (ISO)

intracellular membrane-bounded organelle (ISO)

Molecular Function

type I transforming growth factor beta receptor binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Snx25
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	23,676,002 - 23,787,308 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	23,678,301 - 23,787,256 (-)	NCBI	ChiLan1.0	ChiLan1.0

SNX25
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	185,204,237 - 185,378,642 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	185,204,237 - 185,370,185 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	186,125,391 - 186,285,120 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	186,368,278 - 186,522,114 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	186,506,432 - 186,660,267	NCBI
Celera	4	183,458,214 - 183,611,271 (+)	NCBI		Celera
Cytogenetic Map	4	q35.1	NCBI
HuRef	4	181,885,306 - 182,038,630 (+)	NCBI		HuRef
CHM1_1	4	186,107,800 - 186,261,551 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	188,547,948 - 188,721,939 (+)	NCBI		T2T-CHM13v2.0

Snx25
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	46,486,298 - 46,605,535 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	46,486,298 - 46,605,196 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	46,033,261 - 46,152,441 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	46,033,261 - 46,152,159 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	47,118,615 - 47,209,500 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	47,532,089 - 47,615,519 (-)	NCBI		MGSCv36	mm8
Celera	8	48,716,126 - 48,805,692 (-)	NCBI		Celera
Cytogenetic Map	8	B1.1	NCBI
cM Map	8	26.03	NCBI

Snx25
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	52,867,102 - 52,971,028 (+)	NCBI		GRCr8
mRatBN7.2	16	46,134,552 - 46,238,471 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	46,125,804 - 46,238,440 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	16	49,328,958 - 49,432,415 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	49,350,884 - 49,432,118 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	49,051,539 - 49,159,381 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	49,415,658 - 49,518,663 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	49,415,438 - 49,518,714 (+)	NCBI
Celera	16	44,133,781 - 44,236,984 (+)	NCBI		Celera
Cytogenetic Map	16	q11	NCBI

SNX25
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	182,919,189 - 183,101,546 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	183,267,470 - 183,449,896 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	177,377,302 - 177,529,601 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	189,631,239 - 189,746,590 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	189,631,239 - 189,746,590 (+)	Ensembl	panpan1.1		panPan2

SNX25
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	45,269,434 - 45,411,890 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	45,269,412 - 45,403,719 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	45,757,002 - 45,899,584 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	47,485,851 - 47,628,628 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	47,485,862 - 47,621,172 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	45,454,112 - 45,588,797 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	46,066,177 - 46,201,210 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	46,197,403 - 46,340,369 (-)	NCBI		UU_Cfam_GSD_1.0

Snx25
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	34,020,358 - 34,127,227 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936554	3,979,441 - 4,087,162 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936554	3,982,755 - 4,093,143 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SNX25
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	46,266,762 - 46,388,324 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	46,306,967 - 46,388,404 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	53,105,358 - 53,186,279 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SNX25
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	131,171,833 - 131,320,054 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	131,207,046 - 131,313,261 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	111,432,323 - 111,584,861 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Snx25
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624769	16,058,827 - 16,220,716 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005373470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013512963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013512965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01002250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01002251	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01002252	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01002253	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01002254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDK01250049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000018250 ⟹ ENSCLAP00000018072

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955403	23,676,002 - 23,787,308 (-)	Ensembl

RefSeq Acc Id:

ENSCLAT00000018251 ⟹ ENSCLAP00000018073

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955403	23,678,818 - 23,772,793 (-)	Ensembl

RefSeq Acc Id:

XM_005373470 ⟹ XP_005373527

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955403	23,678,301 - 23,787,255 (-)	NCBI

Sequence:

show sequence

AACACCACTACTTTCTATCAACACAGAACTCTCTAAATGACCTCTTGGCACATGTCTGGCAGTT
TTCTTTTATTGAGTCCTGTGTATGGAAACTCACATGAGACAGTTCAGTCTAGAAGGGTAGTAAT
TTCTCATAATATGGATAAAGCTCTGAAAGAAGTGTTCGACTACAGTTACAGAGATTACATTCTC
TCCTGGTATGGAAACCTCAGCAGAGATGAGGGACAGCTTTACCATCTGCTCTTGGAAGACTTTT
GGGAAATTGTCAAGCAGCTTCACCACAGAATGAGTCATGTGGATGTGGTTAAAGTTGTGTGCAA
TGAGGTTGTAAGGGCTTTACTTACTCATTTCTGTGACCTGAAAGCTGCTAACCCCAGGAATGAA
GAACAGCCAAGGCCTTTTGTGTTGCATGCATGCTTGAGGAATTCAGAAGATGAATTAAGATTCC
TGCAATTGTATTCTCAAGTTCTGGTGTTTTGTCTCCTCCCTTCAAAGGATATCCAGTCTCTCAG
TTTACGTATTATGCTTGCAGAAATTCTCACAACAAAAGTCTTGAAGACAGTAGTGGATTTCCTG
AGTAATCCAGATTACATTAACCAAATGCTGCTTTCCCAGTTGGAGTACAGAGAACAGATGAATG
AGCAACACAAGAGAGCCTATACCTATGCTCCTTCTTATGAAGAGTTCATCAAGCTTATCAATGG
CAGTTCTGATGTGGAGTTCTTGAAGCAACTGAGGTATCAGATTGTAGTGGAAATAATCCAGGCA
ACTACAATTAGCAGCTTTCCCCAGCTGAAGAGGCACAAGGGTAAGGAATCTGCTGCAATGAAAG
CTGACCTCCTGAGGGCCAGGAATATGAAAAGGTACATTAACCAGCTGACTGTGGCAAAGAAGCT
GTGTGAGAAGAGAATCAGAATCCTGGGAGGTCCTGCCTATGACCAGCAGGAGGATGGGGCCTTG
GATGAGGGGGAAGGGCCTCAAAGCCAGAAGATTCTTCAATTTGAAGATATTATGGCCAATACCT
TGTATCGAGAGCATTTTCGATTATACTTGGAAAGGATGGACAAGAGAGCACTGATCCGTTTTTG
GGAATCTGTGGAACGTTTAAAGAATGCTAACAAGAATGAAATTCCACAATTAGTTGGTGAAATT
TATCAAAAATTCTTCGTGGAAAGCAAAGAAATATGTGTGGAAAAGTCACTTTACAAAGAAATCC
AGCAGTGTCTTGTAGGAAATAAAGATATTAAGGTGTTCTGCAAAATCCAGGAAGATGTATTTGA
GATCCTAAAGGACAGGTATTACCCTTCCTTTATTGTAAGCGACCTGTATGAGAAATTGATCATA
AAAGAAGAAGATAAACAAGACTTAGATTTGATTTACAACAAGGATGAAATGGGCCCAGGAGGTG
AGGCTGATGAAGCTGTAGTCGAAGGTACCAGTGAGATTAATGAACAAGCCAGTTTTGCTGTGAA
CAAATTACGAGAACTGAATGAGAAACTTGAATATAAAAGGCAAGCTCTAAATTCTATCCAGAAT
GCACCAAAACCTGACAAGAAGATTGTTTCCAAGTTGAAGGATGAAATACTTCTAATAGAGAAGG
AACGCACAGACCTTCAGCTGCACATGGCAAGAACAGACTGGTGGTGTGAGAACCTGGGCATGTG
GAAAGCCTTCATCACCAGTGGAGAGATTACAGAAGAGAATGGTGAGCAAATGCCTTGTTATTTT
GTCATGGTCAGCCTACAAGAAGTTGGAAGAATTGAAACTAAGAACTGGACTGTCCCAAGACGGC
TCAGTGAGTTTCAGAATTTACACCGAAAACTTAGTGAGTGTGTCCCTTCTTTAAAAAAAGTCCA
GCTGCCTTCTCTTAGCAAGCTGCCTTTCAAATCTATAGATCACAAGTTTATGGAAAAGTCAAAG
AATCAATTAAATAAGTTTTTACAGAATCTACTTTCAGATGAAAGACTCTGTCAGAGTGAAGCAC
TTTATGCCTTTTTGAGCCCTTCTCCTGACTACCTCAAGGCTATTGATGTGCAGGGGAAAAAAAA
CACTTTTTCATTATCCTCATTTTTGGAAAAACTTCCTCGTGACTTCTTCTCCCATCAGGAGGAA
GAGCCAGAAGAGGACAGTGACCTGTCAGATTATGGCGATGATGTGGATGGGAGGAAAGATGCCT
TGGCTGAACCATGTTTCATGTTGATTGGGGAGATTTTTGAACTTCGAGGAATGTTTAAGTGGGT
GAGAAGAACATTAATTGCTCTTGTTCAGGTCACTTTTGGAAGAACCATCAACAAACAAATCCGG
GACACAGTGAATTGGATTTTCAGTGAACAAATGCTAGTGTACTACATTAATGTTTTCCGAGATG
CTTTCTGGCCAAATGGGAAATTGGCACCACCAACTAGAATCAGAAGCAAAGCTCAAAGTCAAGA
AACAAAACAGAGAGCGCAGCAAAAACTACTTGAAAACATTCCAGATACACTTCAGAGCCTTCTT
GGACAGCAAAATGCCCGCCATGGTATAATAAAAATATTCAAGGCACTGCAAGAAACAAGAGCCA
ATAAGCATCTGTTATATGTGCTGATGGAACTGCTGCTAATTGAGCTGTGTCCTGAGCTGAGAAC
TCATTTAGATCAACTGAAAGCTGGTCACCTTTGAGCTGCACAAATAAACCACCAGAGAAATGTC
TGTGTCATAATAGACATGAAACATTTTCCTCTTTTCCACAGAGGGCTTGACTGAGAACCGTACT
GATTTTTATTTTAGTTATATCCCTCTAGTTTTATGTCAAATAAGCAGAATTGAGGGGAGGGTGA
TTTGATGCTATCATAGGCAACAGGGAAAGAACTTCTGTTCATTGATTTTTATTTAAATAATATA
AATACTTTAAAGTTCAACATACTGATAGAAAAAAAAATGTTAATATGTGCTAAGAACCTAGAAA
ATATTTTAAATATTTATGAAAACAGTTTTGTTTTAAAATGAAGAACTATGAATCTTGTACAGTA
ATTTCTTCCCTGATGACTCGGAACATTCCTATATTATTTCTTGTGTATTGAAGAACATTGTTGT
GCAATGCTTTGTGTAAAGTTATTGTGAAAATTTTATTCTCTTTATTTTTACCAAAGATTTCCCA
TAGTTTGAAGCATTTGAAGCAATAAAATATAAAAATGAA

hide sequence

RefSeq Acc Id:

XM_013512963 ⟹ XP_013368417

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955403	23,678,301 - 23,782,026 (-)	NCBI

Sequence:

show sequence

AGCCTGTTTTTAAACATCCAAATTCAAATAATCCTCCCGCTCAGCCTCCTTAGCACCTGGGACT
ACAGAGTCCTGTGTATGGAAACTCACATGAGACAGTTCAGTCTAGAAGGGTAGTAATTTCTCAT
AATATGGATAAAGCTCTGAAAGAAGTGTTCGACTACAGTTACAGAGATTACATTCTCTCCTGGT
ATGGAAACCTCAGCAGAGATGAGGGACAGCTTTACCATCTGCTCTTGGAAGACTTTTGGGAAAT
TGTCAAGCAGCTTCACCACAGAATGAGTCATGTGGATGTGGTTAAAGTTGTGTGCAATGAGGTT
GTAAGGGCTTTACTTACTCATTTCTGTGACCTGAAAGCTGCTAACCCCAGGAATGAAGAACAGC
CAAGGCCTTTTGTGTTGCATGCATGCTTGAGGAATTCAGAAGATGAATTAAGATTCCTGCAATT
GTATTCTCAAGTTCTGGTGTTTTGTCTCCTCCCTTCAAAGGATATCCAGTCTCTCAGTTTACGT
ATTATGCTTGCAGAAATTCTCACAACAAAAGTCTTGAAGACAGTAGTGGATTTCCTGAGTAATC
CAGATTACATTAACCAAATGCTGCTTTCCCAGTTGGAGTACAGAGAACAGATGAATGAGCAACA
CAAGAGAGCCTATACCTATGCTCCTTCTTATGAAGAGTTCATCAAGCTTATCAATGGCAGTTCT
GATGTGGAGTTCTTGAAGCAACTGAGGTATCAGATTGTAGTGGAAATAATCCAGGCAACTACAA
TTAGCAGCTTTCCCCAGCTGAAGAGGCACAAGGGTAAGGAATCTGCTGCAATGAAAGCTGACCT
CCTGAGGGCCAGGAATATGAAAAGGTACATTAACCAGCTGACTGTGGCAAAGAAGCTGTGTGAG
AAGAGAATCAGAATCCTGGGAGGTCCTGCCTATGACCAGCAGGAGGATGGGGCCTTGGATGAGG
GGGAAGGGCCTCAAAGCCAGAAGATTCTTCAATTTGAAGATATTATGGCCAATACCTTGTATCG
AGAGCATTTTCGATTATACTTGGAAAGGATGGACAAGAGAGCACTGATCCGTTTTTGGGAATCT
GTGGAACGTTTAAAGAATGCTAACAAGAATGAAATTCCACAATTAGTTGGTGAAATTTATCAAA
AATTCTTCGTGGAAAGCAAAGAAATATGTGTGGAAAAGTCACTTTACAAAGAAATCCAGCAGTG
TCTTGTAGGAAATAAAGATATTAAGGTGTTCTGCAAAATCCAGGAAGATGTATTTGAGATCCTA
AAGGACAGGTATTACCCTTCCTTTATTGTAAGCGACCTGTATGAGAAATTGATCATAAAAGAAG
AAGATAAACAAGACTTAGATTTGATTTACAACAAGGATGAAATGGGCCCAGGAGGTGAGGCTGA
TGAAGCTGTAGTCGAAGGTACCAGTGAGATTAATGAACAAGCCAGTTTTGCTGTGAACAAATTA
CGAGAACTGAATGAGAAACTTGAATATAAAAGGCAAGCTCTAAATTCTATCCAGAATGCACCAA
AACCTGACAAGAAGATTGTTTCCAAGTTGAAGGATGAAATACTTCTAATAGAGAAGGAACGCAC
AGACCTTCAGCTGCACATGGCAAGAACAGACTGGTGGTGTGAGAACCTGGGCATGTGGAAAGCC
TTCATCACCAGTGGAGAGATTACAGAAGAGAATGGTGAGCAAATGCCTTGTTATTTTGTCATGG
TCAGCCTACAAGAAGTTGGAAGAATTGAAACTAAGAACTGGACTGTCCCAAGACGGCTCAGTGA
GTTTCAGAATTTACACCGAAAACTTAGTGAGTGTGTCCCTTCTTTAAAAAAAGTCCAGCTGCCT
TCTCTTAGCAAGCTGCCTTTCAAATCTATAGATCACAAGTTTATGGAAAAGTCAAAGAATCAAT
TAAATAAGTTTTTACAGAATCTACTTTCAGATGAAAGACTCTGTCAGAGTGAAGCACTTTATGC
CTTTTTGAGCCCTTCTCCTGACTACCTCAAGGCTATTGATGTGCAGGGGAAAAAAAACACTTTT
TCATTATCCTCATTTTTGGAAAAACTTCCTCGTGACTTCTTCTCCCATCAGGAGGAAGAGCCAG
AAGAGGACAGTGACCTGTCAGATTATGGCGATGATGTGGATGGGAGGAAAGATGCCTTGGCTGA
ACCATGTTTCATGTTGATTGGGGAGATTTTTGAACTTCGAGGAATGTTTAAGTGGGTGAGAAGA
ACATTAATTGCTCTTGTTCAGGTCACTTTTGGAAGAACCATCAACAAACAAATCCGGGACACAG
TGAATTGGATTTTCAGTGAACAAATGCTAGTGTACTACATTAATGTTTTCCGAGATGCTTTCTG
GCCAAATGGGAAATTGGCACCACCAACTAGAATCAGAAGCAAAGCTCAAAGTCAAGAAACAAAA
CAGAGAGCGCAGCAAAAACTACTTGAAAACATTCCAGATACACTTCAGAGCCTTCTTGGACAGC
AAAATGCCCGCCATGGTATAATAAAAATATTCAAGGCACTGCAAGAAACAAGAGCCAATAAGCA
TCTGTTATATGTGCTGATGGAACTGCTGCTAATTGAGCTGTGTCCTGAGCTGAGAACTCATTTA
GATCAACTGAAAGCTGGTCACCTTTGAGCTGCACAAATAAACCACCAGAGAAATGTCTGTGTCA
TAATAGACATGAAACATTTTCCTCTTTTCCACAGAGGGCTTGACTGAGAACCGTACTGATTTTT
ATTTTAGTTATATCCCTCTAGTTTTATGTCAAATAAGCAGAATTGAGGGGAGGGTGATTTGATG
CTATCATAGGCAACAGGGAAAGAACTTCTGTTCATTGATTTTTATTTAAATAATATAAATACTT
TAAAGTTCAACATACTGATAGAAAAAAAAATGTTAATATGTGCTAAGAACCTAGAAAATATTTT
AAATATTTATGAAAACAGTTTTGTTTTAAAATGAAGAACTATGAATCTTGTACAGTAATTTCTT
CCCTGATGACTCGGAACATTCCTATATTATTTCTTGTGTATTGAAGAACATTGTTGTGCAATGC
TTTGTGTAAAGTTATTGTGAAAATTTTATTCTCTTTATTTTTACCAAAGATTTCCCATAGTTTG
AAGCATTTGAAGCAATAAAATATAAAAATGAA

hide sequence

RefSeq Acc Id:

XM_013512965 ⟹ XP_013368419

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955403	23,678,301 - 23,787,256 (-)	NCBI

Sequence:

show sequence

AAACACCACTACTTTCTATCAACACAGAACTCTCTAAATGACCTCTTGGCACATGTCTGGCAGT
TTTCTTTTATTGAGTCCTGTGTATGGAAACTCACATGAGACAGTTCAGTCTAGAAGGGTAGTAA
TTTCTCATAATATGGATAAAGCTCTGAAAGAAGTGTTCGACTACAGTTACAGAGATTACATTCT
CTCCTGGTATGGAAACCTCAGCAGAGATGAGGGACAGCTTTACCATCTGCTCTTGGAAGACTTT
TGGGAAATTGTCAAGCAGCTTCACCACAGAATGAGTCATGTGGATGTGGTTAAAGTTGTGTGCA
ATGAGGTTGTAAGGGCTTTACTTACTCATTTCTGTGACCTGAAAGCTGCTAACCCCAGGAATGA
AGAACAGCCAAGGCCTTTTGTGTTGCATGCATGCTTGAGGAATTCAGAAGATGAATTAAGATTC
CTGCAATTGTATTCTCAAGTTCTGGTGTTTTGTCTCCTCCCTTCAAAGGATATCCAGTCTCTCA
GTTTACGTATTATGCTTGCAGAAATTCTCACAACAAAAGTCTTGAAGACAGTAGTGGATTTCCT
GAGTAATCCAGATTACATTAACCAAATGCTGCTTTCCCAGTTGGAGTACAGAGAACAGATGAAT
GAGCAACACAAGAGAGCCTATACCTATGCTCCTTCTTATGAAGAGTTCATCAAGCTTATCAATG
GCAGTTCTGATGTGGAGTTCTTGAAGCAACTGAGGTATCAGATTGTAGTGGAAATAATCCAGGC
AACTACAATTAGCAGCTTTCCCCAGCTGAAGAGGCACAAGGGTAAGGAATCTGCTGCAATGAAA
GCTGACCTCCTGAGGGCCAGGAATATGAAAAGGTACATTAACCAGCTGACTGTGGCAAAGAAGC
TGTGTGAGAAGAGAATCAGAATCCTGGGAGGTCCTGCCTATGACCAGCAGGAGGATGGGGCCTT
GGATGAGGGGGAAGGGCCTCAAAGCCAGAAGATTCTTCAATTTGAAGATATTATGGCCAATACC
TTGTATCGAGAGCATTTTCGATTATACTTGGAAAGGATGGACAAGAGAGCACTGATCCGTTTTT
GGGAATCTGTGGAACGTTTAAAGAATGCTAACAAGAATGAAATTCCACAATTAGTTGGTGAAAT
TTATCAAAAATTCTTCGTGGAAAGCAAAGAAATATGTGTGGAAAAGTCACTTTACAAAGAAATC
CAGCAGTGTCTTGTAGGAAATAAAGATATTAAGGTGTTCTGCAAAATCCAGGAAGATGTATTTG
AGATCCTAAAGGACAGGTATTACCCTTCCTTTATTGTAAGCGACCTGTATGAGAAATTGATCAT
AAAAGAAGAAGATAAACAAGACTTAGATTTGATTTACAACAAGGATGAAATGGGCCCAGGAGGT
GAGGCTGATGAAGCTGTAGTCGAAGGTACCAGTGAGATTAATGAACAAGCCAGTTTTGCTGTGA
ACAAATTACGAGAACTGAATGAGAAACTTGAATATAAAAGGCAAGCTCTAAATTCTATCCAGAA
TGCACCAAAACCTGACAAGAAGATTGTTTCCAAGTTGAAGGATGAAATACTTCTAATAGAGAAG
GAACGCACAGACCTTCAGCTGCACATGGCAAGAACAGACTGGTGGTGTGAGAACCTGGGCATGT
GGAAAGCCTTCATCACCAGTGGAGAGATTACAGAAGAGAATGGTGAGCAAATGCCTTGTTATTT
TGTCATGGTCAGCCTACAAGAAGTTGGAAGAATTGAAACTAAGAACTGGACTGTCCCAAGACGG
CTCAGTGAGTTTCAGAATTTACACCGAAAACTTAGTGAGAATCTACTTTCAGATGAAAGACTCT
GTCAGAGTGAAGCACTTTATGCCTTTTTGAGCCCTTCTCCTGACTACCTCAAGGCTATTGATGT
GCAGGGGAAAAAAAACACTTTTTCATTATCCTCATTTTTGGAAAAACTTCCTCGTGACTTCTTC
TCCCATCAGGAGGAAGAGCCAGAAGAGGACAGTGACCTGTCAGATTATGGCGATGATGTGGATG
GGAGGAAAGATGCCTTGGCTGAACCATGTTTCATGTTGATTGGGGAGATTTTTGAACTTCGAGG
AATGTTTAAGTGGGTGAGAAGAACATTAATTGCTCTTGTTCAGGTCACTTTTGGAAGAACCATC
AACAAACAAATCCGGGACACAGTGAATTGGATTTTCAGTGAACAAATGCTAGTGTACTACATTA
ATGTTTTCCGAGATGCTTTCTGGCCAAATGGGAAATTGGCACCACCAACTAGAATCAGAAGCAA
AGCTCAAAGTCAAGAAACAAAACAGAGAGCGCAGCAAAAACTACTTGAAAACATTCCAGATACA
CTTCAGAGCCTTCTTGGACAGCAAAATGCCCGCCATGGTATAATAAAAATATTCAAGGCACTGC
AAGAAACAAGAGCCAATAAGCATCTGTTATATGTGCTGATGGAACTGCTGCTAATTGAGCTGTG
TCCTGAGCTGAGAACTCATTTAGATCAACTGAAAGCTGGTCACCTTTGAGCTGCACAAATAAAC
CACCAGAGAAATGTCTGTGTCATAATAGACATGAAACATTTTCCTCTTTTCCACAGAGGGCTTG
ACTGAGAACCGTACTGATTTTTATTTTAGTTATATCCCTCTAGTTTTATGTCAAATAAGCAGAA
TTGAGGGGAGGGTGATTTGATGCTATCATAGGCAACAGGGAAAGAACTTCTGTTCATTGATTTT
TATTTAAATAATATAAATACTTTAAAGTTCAACATACTGATAGAAAAAAAAATGTTAATATGTG
CTAAGAACCTAGAAAATATTTTAAATATTTATGAAAACAGTTTTGTTTTAAAATGAAGAACTAT
GAATCTTGTACAGTAATTTCTTCCCTGATGACTCGGAACATTCCTATATTATTTCTTGTGTATT
GAAGAACATTGTTGTGCAATGCTTTGTGTAAAGTTATTGTGAAAATTTTATTCTCTTTATTTTT
ACCAAAGATTTCCCATAGTTTGAAGCATTTGAAGCAATAAAATATAAAAATGAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005373527	(Get FASTA)	NCBI Sequence Viewer
	XP_013368417	(Get FASTA)	NCBI Sequence Viewer
	XP_013368419	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000018072
	ENSCLAP00000018072.1
	ENSCLAP00000018073
	ENSCLAP00000018073.1

RefSeq Acc Id:	XP_005373527 ⟸ XM_005373470
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2VTD2 (UniProtKB/TrEMBL), A0A8C2VMZ3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSWHMSGSFLLLSPVYGNSHETVQSRRVVISHNMDKALKEVFDYSYRDYILSWYGNLSRDEGQ LYHLLLEDFWEIVKQLHHRMSHVDVVKVVCNEVVRALLTHFCDLKAANPRNEEQPRPFVLHACL RNSEDELRFLQLYSQVLVFCLLPSKDIQSLSLRIMLAEILTTKVLKTVVDFLSNPDYINQMLLS QLEYREQMNEQHKRAYTYAPSYEEFIKLINGSSDVEFLKQLRYQIVVEIIQATTISSFPQLKRH KGKESAAMKADLLRARNMKRYINQLTVAKKLCEKRIRILGGPAYDQQEDGALDEGEGPQSQKIL QFEDIMANTLYREHFRLYLERMDKRALIRFWESVERLKNANKNEIPQLVGEIYQKFFVESKEIC VEKSLYKEIQQCLVGNKDIKVFCKIQEDVFEILKDRYYPSFIVSDLYEKLIIKEEDKQDLDLIY NKDEMGPGGEADEAVVEGTSEINEQASFAVNKLRELNEKLEYKRQALNSIQNAPKPDKKIVSKL KDEILLIEKERTDLQLHMARTDWWCENLGMWKAFITSGEITEENGEQMPCYFVMVSLQEVGRIE TKNWTVPRRLSEFQNLHRKLSECVPSLKKVQLPSLSKLPFKSIDHKFMEKSKNQLNKFLQNLLS DERLCQSEALYAFLSPSPDYLKAIDVQGKKNTFSLSSFLEKLPRDFFSHQEEEPEEDSDLSDYG DDVDGRKDALAEPCFMLIGEIFELRGMFKWVRRTLIALVQVTFGRTINKQIRDTVNWIFSEQML VYYINVFRDAFWPNGKLAPPTRIRSKAQSQETKQRAQQKLLENIPDTLQSLLGQQNARHGIIKI FKALQETRANKHLLYVLMELLLIELCPELRTHLDQLKAGHL hide sequence

RefSeq Acc Id:	XP_013368419 ⟸ XM_013512965
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C2VMZ3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSWHMSGSFLLLSPVYGNSHETVQSRRVVISHNMDKALKEVFDYSYRDYILSWYGNLSRDEGQ LYHLLLEDFWEIVKQLHHRMSHVDVVKVVCNEVVRALLTHFCDLKAANPRNEEQPRPFVLHACL RNSEDELRFLQLYSQVLVFCLLPSKDIQSLSLRIMLAEILTTKVLKTVVDFLSNPDYINQMLLS QLEYREQMNEQHKRAYTYAPSYEEFIKLINGSSDVEFLKQLRYQIVVEIIQATTISSFPQLKRH KGKESAAMKADLLRARNMKRYINQLTVAKKLCEKRIRILGGPAYDQQEDGALDEGEGPQSQKIL QFEDIMANTLYREHFRLYLERMDKRALIRFWESVERLKNANKNEIPQLVGEIYQKFFVESKEIC VEKSLYKEIQQCLVGNKDIKVFCKIQEDVFEILKDRYYPSFIVSDLYEKLIIKEEDKQDLDLIY NKDEMGPGGEADEAVVEGTSEINEQASFAVNKLRELNEKLEYKRQALNSIQNAPKPDKKIVSKL KDEILLIEKERTDLQLHMARTDWWCENLGMWKAFITSGEITEENGEQMPCYFVMVSLQEVGRIE TKNWTVPRRLSEFQNLHRKLSENLLSDERLCQSEALYAFLSPSPDYLKAIDVQGKKNTFSLSSF LEKLPRDFFSHQEEEPEEDSDLSDYGDDVDGRKDALAEPCFMLIGEIFELRGMFKWVRRTLIAL VQVTFGRTINKQIRDTVNWIFSEQMLVYYINVFRDAFWPNGKLAPPTRIRSKAQSQETKQRAQQ KLLENIPDTLQSLLGQQNARHGIIKIFKALQETRANKHLLYVLMELLLIELCPELRTHLDQLKA GHL hide sequence

RefSeq Acc Id:	XP_013368417 ⟸ XM_013512963
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2VMZ3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDKALKEVFDYSYRDYILSWYGNLSRDEGQLYHLLLEDFWEIVKQLHHRMSHVDVVKVVCNEVV RALLTHFCDLKAANPRNEEQPRPFVLHACLRNSEDELRFLQLYSQVLVFCLLPSKDIQSLSLRI MLAEILTTKVLKTVVDFLSNPDYINQMLLSQLEYREQMNEQHKRAYTYAPSYEEFIKLINGSSD VEFLKQLRYQIVVEIIQATTISSFPQLKRHKGKESAAMKADLLRARNMKRYINQLTVAKKLCEK RIRILGGPAYDQQEDGALDEGEGPQSQKILQFEDIMANTLYREHFRLYLERMDKRALIRFWESV ERLKNANKNEIPQLVGEIYQKFFVESKEICVEKSLYKEIQQCLVGNKDIKVFCKIQEDVFEILK DRYYPSFIVSDLYEKLIIKEEDKQDLDLIYNKDEMGPGGEADEAVVEGTSEINEQASFAVNKLR ELNEKLEYKRQALNSIQNAPKPDKKIVSKLKDEILLIEKERTDLQLHMARTDWWCENLGMWKAF ITSGEITEENGEQMPCYFVMVSLQEVGRIETKNWTVPRRLSEFQNLHRKLSECVPSLKKVQLPS LSKLPFKSIDHKFMEKSKNQLNKFLQNLLSDERLCQSEALYAFLSPSPDYLKAIDVQGKKNTFS LSSFLEKLPRDFFSHQEEEPEEDSDLSDYGDDVDGRKDALAEPCFMLIGEIFELRGMFKWVRRT LIALVQVTFGRTINKQIRDTVNWIFSEQMLVYYINVFRDAFWPNGKLAPPTRIRSKAQSQETKQ RAQQKLLENIPDTLQSLLGQQNARHGIIKIFKALQETRANKHLLYVLMELLLIELCPELRTHLD QLKAGHL hide sequence

RefSeq Acc Id:

ENSCLAP00000018072 ⟸ ENSCLAT00000018250

RefSeq Acc Id:

ENSCLAP00000018073 ⟸ ENSCLAT00000018251

Protein Domains

PX PXA RGS

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000012397	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000018250	ENTREZGENE
	ENSCLAT00000018250.1	UniProtKB/TrEMBL
	ENSCLAT00000018251	ENTREZGENE
	ENSCLAT00000018251.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.167.10	UniProtKB/TrEMBL
	3.30.1520.10	UniProtKB/TrEMBL
InterPro	Phox_assoc	UniProtKB/TrEMBL
	PX_dom	UniProtKB/TrEMBL
	PX_dom_sf	UniProtKB/TrEMBL
	RGS	UniProtKB/TrEMBL
	RGS_sf	UniProtKB/TrEMBL
	RGS_subdomain_2	UniProtKB/TrEMBL
	SNX25_PX	UniProtKB/TrEMBL
	Sorting_nexin_C	UniProtKB/TrEMBL
NCBI Gene	Snx25	ENTREZGENE
PANTHER	PTHR22775:SF29	UniProtKB/TrEMBL
	SORTING NEXIN	UniProtKB/TrEMBL
Pfam	Nexin_C	UniProtKB/TrEMBL
	PF00787	UniProtKB/TrEMBL
	PXA	UniProtKB/TrEMBL
	RGS	UniProtKB/TrEMBL
PROSITE	PS50195	UniProtKB/TrEMBL
	PXA	UniProtKB/TrEMBL
	RGS	UniProtKB/TrEMBL
SMART	PXA	UniProtKB/TrEMBL
	RGS	UniProtKB/TrEMBL
	SM00312	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48097	UniProtKB/TrEMBL
	SSF64268	UniProtKB/TrEMBL
UniProt	A0A8C2VMZ3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2VTD2	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar