Snx25 (sorting nexin 25) - Rat Genome Database

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Gene: Snx25 (sorting nexin 25) Mus musculus
Analyze
Symbol: Snx25
Name: sorting nexin 25
RGD ID: 1618257
MGI Page MGI
Description: Enables type I transforming growth factor beta receptor binding activity. Involved in negative regulation of transforming growth factor beta receptor signaling pathway and receptor catabolic process. Located in endosome. Orthologous to human SNX25 (sorting nexin 25).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI661919; Gm1699; Gm173; SBBI; Sbbi31; sorting nexin-25
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm17075  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39846,486,298 - 46,605,535 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl846,486,298 - 46,605,196 (-)EnsemblGRCm39 Ensembl
GRCm38846,033,261 - 46,152,441 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl846,033,261 - 46,152,159 (-)EnsemblGRCm38mm10GRCm38
MGSCv37847,118,615 - 47,209,500 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36847,532,089 - 47,615,519 (-)NCBIMGSCv36mm8
Celera848,716,126 - 48,805,692 (-)NCBICelera
Cytogenetic Map8B1.1NCBI
cM Map826.03NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:21266196   PMID:21267068   PMID:21677750   PMID:21873635   PMID:31146259   PMID:32156614   PMID:32325033   PMID:32955616   PMID:36417873   PMID:36703006  


Genomics

Comparative Map Data
Snx25
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39846,486,298 - 46,605,535 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl846,486,298 - 46,605,196 (-)EnsemblGRCm39 Ensembl
GRCm38846,033,261 - 46,152,441 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl846,033,261 - 46,152,159 (-)EnsemblGRCm38mm10GRCm38
MGSCv37847,118,615 - 47,209,500 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36847,532,089 - 47,615,519 (-)NCBIMGSCv36mm8
Celera848,716,126 - 48,805,692 (-)NCBICelera
Cytogenetic Map8B1.1NCBI
cM Map826.03NCBI
SNX25
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384185,204,237 - 185,378,642 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4185,204,237 - 185,370,185 (+)EnsemblGRCh38hg38GRCh38
GRCh374186,125,391 - 186,285,120 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364186,368,278 - 186,522,114 (+)NCBINCBI36Build 36hg18NCBI36
Build 344186,506,432 - 186,660,267NCBI
Celera4183,458,214 - 183,611,271 (+)NCBICelera
Cytogenetic Map4q35.1NCBI
HuRef4181,885,306 - 182,038,630 (+)NCBIHuRef
CHM1_14186,107,800 - 186,261,551 (+)NCBICHM1_1
T2T-CHM13v2.04188,547,948 - 188,721,939 (+)NCBIT2T-CHM13v2.0
Snx25
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81652,867,102 - 52,971,028 (+)NCBIGRCr8
mRatBN7.21646,134,552 - 46,238,471 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1646,125,804 - 46,238,440 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01649,328,958 - 49,432,415 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1649,350,884 - 49,432,118 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01649,051,539 - 49,159,381 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41649,415,658 - 49,518,663 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11649,415,438 - 49,518,714 (+)NCBI
Celera1644,133,781 - 44,236,984 (+)NCBICelera
Cytogenetic Map16q11NCBI
Snx25
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540323,676,002 - 23,787,308 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540323,678,301 - 23,787,256 (-)NCBIChiLan1.0ChiLan1.0
SNX25
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23182,919,189 - 183,101,546 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14183,267,470 - 183,449,896 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04177,377,302 - 177,529,601 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14189,631,239 - 189,746,590 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4189,631,239 - 189,746,590 (+)Ensemblpanpan1.1panPan2
SNX25
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11645,269,434 - 45,411,890 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1645,269,412 - 45,403,719 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1645,757,002 - 45,899,584 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01647,485,851 - 47,628,628 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1647,485,862 - 47,621,172 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11645,454,112 - 45,588,797 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01646,066,177 - 46,201,210 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01646,197,403 - 46,340,369 (-)NCBIUU_Cfam_GSD_1.0
Snx25
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494334,020,358 - 34,127,227 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365543,979,441 - 4,087,162 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365543,982,755 - 4,093,143 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX25
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1546,266,762 - 46,388,324 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11546,306,967 - 46,388,404 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21553,105,358 - 53,186,279 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNX25
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17131,171,833 - 131,320,054 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7131,207,046 - 131,313,261 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037111,432,323 - 111,584,861 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snx25
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476916,058,827 - 16,220,716 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Snx25
4459 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1053
Count of miRNA genes:435
Interacting mature miRNAs:508
Transcripts:ENSMUST00000041582, ENSMUST00000110377, ENSMUST00000110378, ENSMUST00000136097, ENSMUST00000144244, ENSMUST00000150645, ENSMUST00000170416, ENSMUST00000176410, ENSMUST00000177186
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81477316071498244Mouse
1301088Alcw6_malcohol withdrawal 6 (mouse)Not determined81550657249506729Mouse
1300912Daq19_mdirectional asymmetry QTL 19 (mouse)Not determined81550657249506729Mouse
1301298Pgia4_mproteoglycan induced arthritis 4 (mouse)Not determined81656937350569697Mouse
1301550Fembrs2_mfemur breaking strength 2 (mouse)Not determined81832109752321225Mouse
1301160Eae14_msusceptibility to experimental allergic encephalomyelitis 14 (mouse)Not determined81945501853455150Mouse
1300603Cd8ts2_mCD8 T cell subset 2 (mouse)Not determined81945501853455150Mouse
10043974Obq30_mobesity QTL 30 (mouse)Not determined82658332260583322Mouse
13524525Bodwtq7_mbody wweight QTL 7 (mouse)82824955647027681Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83250657271740637Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3250657271740637Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3250657271740637Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3250657271740637Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
10043990Hbnr12_mHeligmosomoides bakeri nematode resistance 12 (mouse)Not determined83327701651290537Mouse
1301936Trigq2_mtriglyceride QTL 2 (mouse)Not determined83429039768290537Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
11041902Lmr10a_mleishmaniasis resistance 10a (mouse)83532109757797633Mouse
11049578Lmr10c_mleishmaniasis resistance 10c (mouse)83532109757797633Mouse
11049577Lmr10b_mleishmaniasis resistance 10b (mouse)83532109757797633Mouse
1301139Lmr10_mleishmaniasis resistance 10 (mouse)Not determined83532109757797633Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83663015493455280Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837867154110326632Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)84016229795416226Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84474791478748059Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000041582   ⟹   ENSMUSP00000035785
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl846,486,303 - 46,604,742 (-)Ensembl
GRCm38.p6 Ensembl846,033,266 - 46,151,705 (-)Ensembl
RefSeq Acc Id: ENSMUST00000110377   ⟹   ENSMUSP00000106006
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl846,509,113 - 46,577,170 (-)Ensembl
GRCm38.p6 Ensembl846,056,076 - 46,124,133 (-)Ensembl
RefSeq Acc Id: ENSMUST00000110378   ⟹   ENSMUSP00000106007
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl846,486,298 - 46,605,196 (-)Ensembl
GRCm38.p6 Ensembl846,033,261 - 46,152,159 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136097
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl846,502,441 - 46,509,489 (-)Ensembl
GRCm38.p6 Ensembl846,049,404 - 46,056,452 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144244   ⟹   ENSMUSP00000148177
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl846,509,157 - 46,542,730 (-)Ensembl
GRCm38.p6 Ensembl846,056,120 - 46,089,693 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150645
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl846,532,879 - 46,558,226 (-)Ensembl
GRCm38.p6 Ensembl846,079,842 - 46,105,189 (-)Ensembl
RefSeq Acc Id: ENSMUST00000170416   ⟹   ENSMUSP00000127640
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl846,486,298 - 46,577,183 (-)Ensembl
GRCm38.p6 Ensembl846,033,261 - 46,124,146 (-)Ensembl
RefSeq Acc Id: ENSMUST00000176410
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl846,486,309 - 46,569,739 (-)Ensembl
GRCm38.p6 Ensembl846,033,272 - 46,116,702 (-)Ensembl
RefSeq Acc Id: ENSMUST00000177186   ⟹   ENSMUSP00000134949
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl846,486,490 - 46,533,321 (-)Ensembl
GRCm38.p6 Ensembl846,033,453 - 46,080,284 (-)Ensembl
RefSeq Acc Id: NM_001372342   ⟹   NP_001359271
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39846,486,298 - 46,605,478 (-)NCBI
GRCm38846,033,261 - 46,152,441 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001372343   ⟹   NP_001359272
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39846,486,298 - 46,605,478 (-)NCBI
GRCm38846,033,261 - 46,152,441 (-)NCBI
Sequence:
RefSeq Acc Id: NM_207213   ⟹   NP_997096
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39846,486,298 - 46,604,800 (-)NCBI
GRCm38846,033,261 - 46,151,763 (-)NCBI
MGSCv37847,118,615 - 47,209,500 (-)RGD
Celera848,716,126 - 48,805,692 (-)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036153706   ⟹   XP_036009599
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39846,486,303 - 46,605,352 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004934742
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39846,486,303 - 46,605,535 (-)NCBI
Sequence:
RefSeq Acc Id: NP_997096   ⟸   NM_207213
- Peptide Label: isoform 3
- UniProtKB: E9QMG5 (UniProtKB/Swiss-Prot),   Q6PGF1 (UniProtKB/Swiss-Prot),   Q3ZT31 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001359272   ⟸   NM_001372343
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001359271   ⟸   NM_001372342
- Peptide Label: isoform 1
- UniProtKB: E9Q1K0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000127640   ⟸   ENSMUST00000170416
RefSeq Acc Id: ENSMUSP00000148177   ⟸   ENSMUST00000144244
RefSeq Acc Id: ENSMUSP00000106006   ⟸   ENSMUST00000110377
RefSeq Acc Id: ENSMUSP00000106007   ⟸   ENSMUST00000110378
RefSeq Acc Id: ENSMUSP00000134949   ⟸   ENSMUST00000177186
RefSeq Acc Id: ENSMUSP00000035785   ⟸   ENSMUST00000041582
RefSeq Acc Id: XP_036009599   ⟸   XM_036153706
- Peptide Label: isoform X1
- UniProtKB: Q7TQF4 (UniProtKB/TrEMBL)
Protein Domains
PX   PXA   RGS

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3ZT31-F1-model_v2 AlphaFold Q3ZT31 1-840 view protein structure

Promoters
RGD ID:6843755
Promoter ID:MM_KWN:54332
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:OTTMUST00000060555
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36847,175,571 - 47,176,071 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2142610 AgrOrtholog
Ensembl Genes ENSMUSG00000038291 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000041582 ENTREZGENE
  ENSMUST00000041582.15 UniProtKB/Swiss-Prot
  ENSMUST00000110377.9 UniProtKB/TrEMBL
  ENSMUST00000110378 ENTREZGENE
  ENSMUST00000110378.9 UniProtKB/TrEMBL
  ENSMUST00000144244.2 UniProtKB/TrEMBL
  ENSMUST00000170416.8 UniProtKB/Swiss-Prot
  ENSMUST00000177186.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.167.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.1520.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Phox UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Phox_assoc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RGS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RGS_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RGS_subdomain_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNX25_PX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sorting_nexin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:102141 UniProtKB/Swiss-Prot
MGD MGI:2142610 ENTREZGENE
NCBI Gene 102141 ENTREZGENE
PANTHER PTHR22775:SF29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SORTING NEXIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Nexin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00787 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PXA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RGS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Snx25 PhenoGen
PROSITE PS50195 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PXA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RGS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PXA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RGS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00312 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48097 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF64268 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1B0GT31_MOUSE UniProtKB/TrEMBL
  D3Z040_MOUSE UniProtKB/TrEMBL
  E9Q1K0 ENTREZGENE, UniProtKB/TrEMBL
  E9QMG5 ENTREZGENE
  H3BJE1_MOUSE UniProtKB/TrEMBL
  Q3ZT31 ENTREZGENE
  Q6PGF1 ENTREZGENE
  Q7TQF4 ENTREZGENE, UniProtKB/TrEMBL
  SNX25_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary E9QMG5 UniProtKB/Swiss-Prot
  Q6PGF1 UniProtKB/Swiss-Prot