Krba1 (KRAB-A domain containing 1) - Rat Genome Database

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Gene: Krba1 (KRAB-A domain containing 1) Chinchilla lanigera
Analyze
Symbol: Krba1
Name: KRAB-A domain containing 1
RGD ID: 8951508
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554914,784,937 - 4,804,051 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554914,784,536 - 4,805,976 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Krba1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554914,784,937 - 4,804,051 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554914,784,536 - 4,805,976 (+)NCBIChiLan1.0ChiLan1.0
KRBA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387149,714,951 - 149,734,575 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7149,714,781 - 149,734,575 (+)EnsemblGRCh38hg38GRCh38
GRCh377149,412,042 - 149,431,664 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367149,043,081 - 149,062,597 (+)NCBINCBI36Build 36hg18NCBI36
Celera7144,081,358 - 144,100,876 (+)NCBICelera
Cytogenetic Map7q36.1NCBI
HuRef7143,488,412 - 143,507,802 (+)NCBIHuRef
CHM1_17149,420,733 - 149,440,251 (+)NCBICHM1_1
T2T-CHM13v2.07150,896,867 - 150,916,494 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27148,750,155 - 148,769,673 (+)NCBI
Krba1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39648,371,577 - 48,396,789 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl648,372,520 - 48,396,715 (+)EnsemblGRCm39 Ensembl
GRCm38648,394,643 - 48,419,855 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl648,395,586 - 48,419,781 (+)EnsemblGRCm38mm10GRCm38
MGSCv37648,345,585 - 48,369,854 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36648,325,252 - 48,346,487 (+)NCBIMGSCv36mm8
Celera648,899,449 - 48,923,738 (+)NCBICelera
Cytogenetic Map6B2.3NCBI
cM Map623.36NCBI
Krba1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8478,672,384 - 78,693,984 (+)NCBIGRCr8
mRatBN7.2477,341,654 - 77,363,075 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl477,340,959 - 77,363,613 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0478,024,867 - 78,046,330 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl478,024,765 - 78,046,066 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04142,688,463 - 142,709,881 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4476,477,912 - 76,499,326 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1476,754,057 - 76,774,989 (+)NCBI
Celera472,279,357 - 72,300,819 (+)NCBICelera
Cytogenetic Map4q24NCBI
KRBA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26186,271,535 - 186,293,461 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1738,281,826 - 38,301,544 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07141,417,879 - 141,439,606 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17153,891,432 - 153,910,989 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7153,891,432 - 153,910,989 (+)Ensemblpanpan1.1panPan2
KRBA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11614,487,421 - 14,514,016 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1614,487,552 - 14,511,207 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1615,096,286 - 15,122,912 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01616,202,413 - 16,229,046 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1616,202,330 - 16,228,274 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11614,582,526 - 14,609,160 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01615,163,323 - 15,189,959 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01615,213,485 - 15,240,117 (+)NCBIUU_Cfam_GSD_1.0
Krba1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051187,115,619 - 7,135,007 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365275,767,780 - 5,782,748 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365275,768,251 - 5,783,853 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KRBA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1855,738,167 - 55,762,966 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11855,738,139 - 55,762,987 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21861,138,184 - 61,150,922 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KRBA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121118,280,304 - 118,299,922 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21118,280,320 - 118,299,392 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607214,238,944 - 14,258,610 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Krba1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248006,272,176 - 6,286,460 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248006,266,554 - 6,291,335 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000001756   ⟹   ENSCLAP00000001713
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554914,784,937 - 4,804,051 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000001757   ⟹   ENSCLAP00000001714
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554914,784,937 - 4,804,051 (+)Ensembl
RefSeq Acc Id: XM_005404754   ⟹   XP_005404811
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554914,784,549 - 4,805,976 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504642   ⟹   XP_013360096
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554914,784,549 - 4,805,976 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504643   ⟹   XP_013360097
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554914,784,550 - 4,805,976 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504644   ⟹   XP_013360098
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554914,784,551 - 4,805,976 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504645   ⟹   XP_013360099
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554914,784,547 - 4,805,976 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504646   ⟹   XP_013360100
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554914,784,549 - 4,805,976 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504647   ⟹   XP_013360101
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554914,784,548 - 4,805,976 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504648   ⟹   XP_013360102
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554914,784,548 - 4,805,976 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504649   ⟹   XP_013360103
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554914,788,483 - 4,805,976 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504650   ⟹   XP_013360104
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554914,784,536 - 4,805,976 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005404811   ⟸   XM_005404754
- Peptide Label: isoform X5
- UniProtKB: A0A8C2YIR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013360104   ⟸   XM_013504650
- Peptide Label: isoform X10
- UniProtKB: A0A8C2YIR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013360099   ⟸   XM_013504645
- Peptide Label: isoform X4
- UniProtKB: A0A8C2YIR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013360101   ⟸   XM_013504647
- Peptide Label: isoform X7
- UniProtKB: A0A8C2YIR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013360102   ⟸   XM_013504648
- Peptide Label: isoform X8
- UniProtKB: A0A8C2YIR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013360096   ⟸   XM_013504642
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YIR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013360100   ⟸   XM_013504646
- Peptide Label: isoform X6
- UniProtKB: A0A8C2YIS6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013360097   ⟸   XM_013504643
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YIR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013360098   ⟸   XM_013504644
- Peptide Label: isoform X3
- UniProtKB: A0A8C2YIR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013360103   ⟸   XM_013504649
- Peptide Label: isoform X9
- UniProtKB: A0A8C2YIR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000001713   ⟸   ENSCLAT00000001756
RefSeq Acc Id: ENSCLAP00000001714   ⟸   ENSCLAT00000001757
Protein Domains
KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001279 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000001756 ENTREZGENE
  ENSCLAT00000001756.1 UniProtKB/TrEMBL
  ENSCLAT00000001757.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  KRBA1 UniProtKB/TrEMBL
  KRBA1_rpt UniProtKB/TrEMBL
NCBI Gene Krba1 ENTREZGENE
PANTHER PROTEIN KRBA1 UniProtKB/TrEMBL
  PTHR22740 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  KRBA1 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  KRBA1 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
UniProt A0A8C2YIR9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YIS6 ENTREZGENE, UniProtKB/TrEMBL