Arl1 (ADP ribosylation factor like GTPase 1) - Rat Genome Database

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Gene: Arl1 (ADP ribosylation factor like GTPase 1) Chinchilla lanigera
Analyze
Symbol: Arl1
Name: ADP ribosylation factor like GTPase 1
RGD ID: 8917120
Description: ENCODES a protein that exhibits enzyme activator activity (ortholog); GTP binding (ortholog); GTPase activity (ortholog); INVOLVED IN Golgi organization (ortholog); Golgi vesicle transport (ortholog); protein localization to Golgi apparatus (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (ortholog); Golgi apparatus (ortholog); trans-Golgi network (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ADP-ribosylation factor-like 1; ADP-ribosylation factor-like protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540536,913,011 - 36,918,017 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540536,913,011 - 36,932,383 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Arl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540536,913,011 - 36,918,017 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540536,913,011 - 36,932,383 (-)NCBIChiLan1.0ChiLan1.0
ARL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812101,393,116 - 101,407,820 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12101,393,116 - 101,407,772 (-)EnsemblGRCh38hg38GRCh38
GRCh3712101,786,894 - 101,801,598 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612100,311,045 - 100,325,703 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412100,289,381 - 100,304,040NCBI
Celera12101,452,210 - 101,466,869 (-)NCBICelera
Cytogenetic Map12q23.2NCBI
HuRef1298,846,985 - 98,861,641 (-)NCBIHuRef
CHM1_112101,752,887 - 101,767,477 (-)NCBICHM1_1
T2T-CHM13v2.012101,354,234 - 101,368,938 (-)NCBIT2T-CHM13v2.0
Arl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391088,566,720 - 88,579,956 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1088,566,720 - 88,579,956 (+)EnsemblGRCm39 Ensembl
GRCm381088,730,920 - 88,744,094 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1088,730,858 - 88,744,094 (+)EnsemblGRCm38mm10GRCm38
MGSCv371088,194,159 - 88,205,947 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361088,161,194 - 88,173,881 (+)NCBIMGSCv36mm8
Celera1090,711,447 - 90,723,221 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1044.19NCBI
Arl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8725,007,401 - 25,018,572 (+)NCBIGRCr8
mRatBN7.2723,120,004 - 23,131,173 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl723,119,589 - 23,131,898 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx725,114,566 - 25,125,737 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0727,277,268 - 27,288,441 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0727,054,306 - 27,065,479 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0729,282,411 - 29,293,455 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl729,282,305 - 29,293,399 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0729,384,788 - 29,395,708 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4725,403,921 - 25,416,168 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1725,424,112 - 25,437,189 (+)NCBI
Celera720,279,124 - 20,290,252 (+)NCBICelera
Cytogenetic Map7q13NCBI
ARL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210109,464,558 - 109,480,754 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112109,460,937 - 109,477,152 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01298,981,212 - 98,994,344 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112102,381,273 - 102,394,272 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12102,381,134 - 102,394,272 (-)Ensemblpanpan1.1panPan2
ARL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11540,390,091 - 40,401,043 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1540,390,890 - 40,401,060 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1540,758,710 - 40,769,658 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01541,044,924 - 41,055,878 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1541,041,767 - 41,055,853 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11540,300,430 - 40,311,369 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01540,409,187 - 40,420,136 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01540,683,467 - 40,694,418 (-)NCBIUU_Cfam_GSD_1.0
Arl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494519,573,506 - 19,585,419 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649212,583,887 - 12,595,798 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649212,583,878 - 12,595,824 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl582,796,121 - 82,815,936 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1582,795,741 - 82,812,153 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2586,794,413 - 86,804,542 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11196,662,260 - 96,674,662 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1196,659,769 - 96,675,486 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037148,327,574 - 148,343,169 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247506,516,531 - 6,523,671 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247506,516,511 - 6,522,759 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000012005   ⟹   ENSCLAP00000011866
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540536,913,011 - 36,918,017 (-)Ensembl
RefSeq Acc Id: XM_005374549   ⟹   XP_005374606
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540536,913,011 - 36,932,383 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374606 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000011866
  ENSCLAP00000011866.1
Reference Protein Sequences
RefSeq Acc Id: XP_005374606   ⟸   XM_005374549
- UniProtKB: A0A8C2V8K3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000011866   ⟸   ENSCLAT00000012005


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008180 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000012005 ENTREZGENE
  ENSCLAT00000012005.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase_ARF/SAR UniProtKB/TrEMBL
NCBI Gene Arl1 ENTREZGENE
PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 1 UniProtKB/TrEMBL
  PTHR11711 UniProtKB/TrEMBL
Pfam Arf UniProtKB/TrEMBL
PRINTS SAR1GTPBP UniProtKB/TrEMBL
PROSITE ARF UniProtKB/TrEMBL
  RAB UniProtKB/TrEMBL
SMART ARF UniProtKB/TrEMBL
  RAB UniProtKB/TrEMBL
  SAR UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2V8K3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Arl1  ADP ribosylation factor like GTPase 1    ADP-ribosylation factor-like 1  Symbol and/or name change 5135510 APPROVED