Postn (periostin) - Rat Genome Database

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Gene: Postn (periostin) Chinchilla lanigera
Analyze
Symbol: Postn
Name: periostin
RGD ID: 8892486
Description: ENCODES a protein that exhibits heparin binding (ortholog); metal ion binding (ortholog); INVOLVED IN bone regeneration (ortholog); cell adhesion (ortholog); cellular response to fibroblast growth factor stimulus (ortholog); ASSOCIATED WITH abdominal aortic aneurysm (ortholog); aggressive periodontitis (ortholog); aspirin-induced respiratory disease (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog); extracellular matrix (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: periostin, osteoblast specific factor
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554318,510,624 - 8,544,971 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554318,510,646 - 8,544,901 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Postn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554318,510,624 - 8,544,971 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554318,510,646 - 8,544,901 (+)NCBIChiLan1.0ChiLan1.0
POSTN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381337,562,585 - 37,598,768 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1337,562,583 - 37,598,844 (-)EnsemblGRCh38hg38GRCh38
GRCh371338,136,722 - 38,172,905 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361337,034,779 - 37,070,874 (-)NCBINCBI36Build 36hg18NCBI36
Build 341337,034,778 - 37,070,874NCBI
Celera1319,190,321 - 19,226,587 (-)NCBICelera
Cytogenetic Map13q13.3NCBI
HuRef1318,936,182 - 18,972,459 (-)NCBIHuRef
CHM1_11338,104,259 - 38,140,559 (-)NCBICHM1_1
T2T-CHM13v2.01336,781,967 - 36,818,162 (-)NCBIT2T-CHM13v2.0
Postn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39354,266,688 - 54,298,462 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl354,268,530 - 54,298,458 (+)EnsemblGRCm39 Ensembl
GRCm38354,359,267 - 54,391,041 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl354,361,109 - 54,391,037 (+)EnsemblGRCm38mm10GRCm38
MGSCv37354,165,047 - 54,194,954 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36354,449,054 - 54,478,961 (+)NCBIMGSCv36mm8
Celera354,083,066 - 54,112,946 (+)NCBICelera
Cytogenetic Map3CNCBI
cM Map325.46NCBI
Postn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82140,677,774 - 140,709,304 (+)NCBIGRCr8
mRatBN7.22138,527,714 - 138,559,098 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2138,527,696 - 138,559,099 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2145,095,839 - 145,127,099 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02143,207,896 - 143,239,160 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02137,839,726 - 137,870,988 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02143,656,820 - 143,688,087 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2143,656,793 - 143,688,087 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02163,331,229 - 163,362,444 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42143,537,099 - 143,568,341 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12143,487,061 - 143,518,300 (+)NCBI
Celera2133,010,117 - 133,041,246 (+)NCBICelera
Cytogenetic Map2q26NCBI
POSTN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21437,092,201 - 37,129,936 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11328,198,563 - 28,234,479 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01318,779,297 - 18,815,207 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11337,371,296 - 37,407,202 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1337,368,030 - 37,407,212 (-)Ensemblpanpan1.1panPan2
POSTN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1253,167,319 - 3,208,970 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl253,167,359 - 3,208,411 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha253,262,519 - 3,304,168 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0253,265,809 - 3,307,415 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl253,265,828 - 3,307,415 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1253,169,826 - 3,211,442 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0253,159,797 - 3,201,445 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0253,231,130 - 3,272,726 (+)NCBIUU_Cfam_GSD_1.0
Postn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945164,274,642 - 164,307,376 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647231,644,778 - 31,677,572 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647231,644,778 - 31,677,572 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POSTN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1113,224,959 - 13,258,978 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11113,225,183 - 13,258,973 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21113,200,044 - 13,233,804 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POSTN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1316,060,013 - 16,095,867 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl316,059,965 - 16,095,791 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605728,185,692 - 28,221,490 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Postn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624920540,750 - 575,855 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624920542,479 - 575,760 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000007336   ⟹   ENSCLAP00000007222
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554318,510,624 - 8,544,971 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000007337   ⟹   ENSCLAP00000007223
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554318,510,624 - 8,544,971 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000007338   ⟹   ENSCLAP00000007224
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554318,510,624 - 8,544,971 (+)Ensembl
RefSeq Acc Id: XM_005387655   ⟹   XP_005387712
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554318,510,646 - 8,544,901 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005387656   ⟹   XP_005387713
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554318,510,646 - 8,544,900 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005387657   ⟹   XP_005387714
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554318,510,646 - 8,544,901 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005387658   ⟹   XP_005387715
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554318,510,646 - 8,544,901 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005387659   ⟹   XP_005387716
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554318,510,646 - 8,544,900 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005387661   ⟹   XP_005387718
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554318,510,646 - 8,544,901 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515886   ⟹   XP_013371340
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554318,510,646 - 8,544,901 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005387712   ⟸   XM_005387655
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UY66 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005387714   ⟸   XM_005387657
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005387715   ⟸   XM_005387658
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005387718   ⟸   XM_005387661
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_005387713   ⟸   XM_005387656
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YLE0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005387716   ⟸   XM_005387659
- Peptide Label: isoform X5
- UniProtKB: A0A8C2YLE2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013371340   ⟸   XM_013515886
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: ENSCLAP00000007224   ⟸   ENSCLAT00000007338
RefSeq Acc Id: ENSCLAP00000007223   ⟸   ENSCLAT00000007337
RefSeq Acc Id: ENSCLAP00000007222   ⟸   ENSCLAT00000007336
Protein Domains
EMI   FAS1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005084 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000007336 ENTREZGENE
  ENSCLAT00000007336.1 UniProtKB/TrEMBL
  ENSCLAT00000007337 ENTREZGENE
  ENSCLAT00000007337.1 UniProtKB/TrEMBL
  ENSCLAT00000007338 ENTREZGENE
  ENSCLAT00000007338.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.180.10 UniProtKB/TrEMBL
InterPro EMI_domain UniProtKB/TrEMBL
  FAS1_dom_sf UniProtKB/TrEMBL
  FAS1_domain UniProtKB/TrEMBL
  TGFBI/POSTN UniProtKB/TrEMBL
NCBI Gene Postn ENTREZGENE
PANTHER PERIOSTIN UniProtKB/TrEMBL
  PERIOSTIN-RELATED UniProtKB/TrEMBL
Pfam Fasciclin UniProtKB/TrEMBL
PIRSF BIGH3_OSF2 UniProtKB/TrEMBL
PROSITE EMI UniProtKB/TrEMBL
  FAS1 UniProtKB/TrEMBL
SMART FAS1 UniProtKB/TrEMBL
Superfamily-SCOP SSF82153 UniProtKB/TrEMBL
UniProt A0A8C2UY66 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YLE0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YLE2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Postn  periostin    periostin, osteoblast specific factor  Symbol and/or name change 5135510 APPROVED