Tango2 (transport and golgi organization 2 homolog) - Rat Genome Database

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Gene: Tango2 (transport and golgi organization 2 homolog) Chinchilla lanigera
Analyze
Symbol: Tango2
Name: transport and golgi organization 2 homolog
RGD ID: 8887735
Description: ASSOCIATED WITH Alstrom syndrome (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transport and Golgi organization protein 2 homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544218,036,477 - 18,074,213 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544218,036,477 - 18,074,036 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Tango2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544218,036,477 - 18,074,213 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544218,036,477 - 18,074,036 (-)NCBIChiLan1.0ChiLan1.0
TANGO2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382220,017,023 - 20,067,164 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2220,017,014 - 20,067,164 (+)EnsemblGRCh38hg38GRCh38
GRCh372220,004,546 - 20,054,687 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362218,388,631 - 18,433,447 (+)NCBINCBI36Build 36hg18NCBI36
Celera223,859,834 - 3,904,651 (+)NCBICelera
Cytogenetic Map22q11.21NCBI
HuRef223,629,293 - 3,673,868 (+)NCBIHuRef
CHM1_12220,008,340 - 20,053,153 (+)NCBICHM1_1
T2T-CHM13v2.02220,394,641 - 20,444,782 (+)NCBIT2T-CHM13v2.0
Tango2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Build 341157,072,134 - 157,126,528NCBI
GRCm391618,118,689 - 18,165,962 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1618,118,689 - 18,165,967 (-)EnsemblGRCm39 Ensembl
GRCm381618,300,825 - 18,348,098 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1618,300,825 - 18,348,103 (-)EnsemblGRCm38mm10GRCm38
MGSCv371618,300,918 - 18,344,025 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361618,214,388 - 18,238,008 (-)NCBIMGSCv36mm8
Celera1618,873,570 - 18,916,677 (-)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1611.34NCBI
Tango2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81196,150,292 - 96,196,883 (+)NCBIGRCr8
mRatBN7.21182,645,978 - 82,692,574 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1182,645,974 - 82,692,574 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1191,377,966 - 91,420,961 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01184,039,194 - 84,082,189 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01183,092,706 - 83,135,702 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01186,793,959 - 86,840,556 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1186,797,557 - 86,840,573 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01189,887,900 - 89,934,494 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41184,643,644 - 84,686,639 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11184,702,391 - 84,727,234 (+)NCBI
Celera1181,426,587 - 81,469,582 (+)NCBICelera
Cytogenetic Map11q23NCBI
TANGO2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22329,645,067 - 29,694,816 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12232,192,466 - 32,241,711 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0222,779,217 - 2,826,445 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12218,449,381 - 18,497,886 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2218,449,387 - 18,497,886 (+)Ensemblpanpan1.1panPan2
TANGO2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12629,265,489 - 29,303,814 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2629,266,256 - 29,304,164 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2629,224,376 - 29,262,736 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02630,669,587 - 30,707,941 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2630,669,585 - 30,707,909 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12628,717,451 - 28,755,795 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02628,342,814 - 28,381,158 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02629,427,808 - 29,466,174 (-)NCBIUU_Cfam_GSD_1.0
Tango2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118138,780,367 - 138,819,275 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366193,934,314 - 3,975,240 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366193,934,791 - 3,973,695 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TANGO2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1451,443,638 - 51,464,367 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11451,443,597 - 51,464,370 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21455,080,233 - 55,100,997 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TANGO2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1195,672,758 - 5,717,574 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl195,672,180 - 5,701,361 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660851,211,121 - 1,263,900 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tango2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624747647,571 - 686,870 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000024294   ⟹   ENSCLAP00000024063
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544218,036,477 - 18,074,213 (-)Ensembl
RefSeq Acc Id: XM_005391746   ⟹   XP_005391803
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544218,036,477 - 18,074,002 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013517770   ⟹   XP_013373224
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544218,036,477 - 18,074,004 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013517771   ⟹   XP_013373225
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544218,036,477 - 18,073,985 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013517772   ⟹   XP_013373226
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544218,036,477 - 18,060,570 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013517773   ⟹   XP_013373227
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544218,036,477 - 18,074,036 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013517774   ⟹   XP_013373228
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544218,036,477 - 18,067,105 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013517775   ⟹   XP_013373229
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544218,036,477 - 18,046,614 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005391803   ⟸   XM_005391746
- Peptide Label: isoform X2
- UniProtKB: A0A8C2W6X7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373227   ⟸   XM_013517773
- Peptide Label: isoform X3
- UniProtKB: A0A8C2W6X7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373224   ⟸   XM_013517770
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W6X7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373225   ⟸   XM_013517771
- Peptide Label: isoform X3
- UniProtKB: A0A8C2W6X7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373228   ⟸   XM_013517774
- Peptide Label: isoform X3
- UniProtKB: A0A8C2W6X7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373226   ⟸   XM_013517772
- Peptide Label: isoform X3
- UniProtKB: A0A8C2W6X7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373229   ⟸   XM_013517775
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSCLAP00000024063   ⟸   ENSCLAT00000024294


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016523 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024294 ENTREZGENE
  ENSCLAT00000024294.1 UniProtKB/TrEMBL
InterPro TANGO2 UniProtKB/TrEMBL
NCBI Gene Tango2 ENTREZGENE
PANTHER PTHR17985 UniProtKB/TrEMBL
  TRANSPORT AND GOLGI ORGANIZATION PROTEIN 2 HOMOLOG UniProtKB/TrEMBL
Pfam TANGO2 UniProtKB/TrEMBL
UniProt A0A8C2W6X7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Tango2  transport and golgi organization 2 homolog    transport and golgi organization 2 homolog (Drosophila)  Symbol and/or name change 5135510 APPROVED