Tango2 (transport and golgi organization 2 homolog)

Gene: Tango2 (transport and golgi organization 2 homolog) Rattus norvegicus

Analyze

Symbol:

Tango2

Name:

transport and golgi organization 2 homolog

RGD ID:

1310348

Description:

Predicted to be involved in Golgi organization and protein secretion. Predicted to be located in cytosol and mitochondrion. Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in TANGO2-related metabolic encephalopathy and arrythmias. Orthologous to human TANGO2 (transport and golgi organization 2 homolog); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; amitrole.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

hypothetical protein LOC360738; LOC360738; RGD1310348; similar to Ser/Thr-rich protein T10 in DGCR region; transport and golgi organization 2 homolog (Drosophila); transport and Golgi organization protein 2 homolog; uncharacterized protein LOC360738

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TANGO2 (transport and golgi organization 2 homolog)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Tango2 (transport and golgi organization 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tango2 (transport and golgi organization 2 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TANGO2 (transport and golgi organization 2 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TANGO2 (transport and golgi organization 2 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tango2 (transport and golgi organization 2 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TANGO2 (transport and golgi organization 2 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TANGO2 (transport and golgi organization 2 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tango2 (transport and golgi organization 2 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Tango2 (transport and golgi organization 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TANGO2 (transport and golgi organization 2 homolog)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tango2 (transport and golgi organization 2 homolog (Drosophila))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	R186.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Tango2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YGR127W	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	Y80D3A.9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	tango2	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	96,150,292 - 96,196,883 (+)	NCBI		GRCr8
mRatBN7.2	11	82,645,978 - 82,692,574 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	82,645,974 - 82,692,574 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	91,377,966 - 91,420,961 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	84,039,194 - 84,082,189 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	83,092,706 - 83,135,702 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	86,793,959 - 86,840,556 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	86,797,557 - 86,840,573 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	89,887,900 - 89,934,494 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	84,643,644 - 84,686,639 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	84,702,391 - 84,727,234 (+)	NCBI
Celera	11	81,426,587 - 81,469,582 (+)	NCBI		Celera
Cytogenetic Map	11	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alstrom syndrome (ISO)

autism spectrum disorder (ISO)

autistic disorder (ISO)

Cardiac Arrhythmias (ISO)

chromosome 22q11.2 deletion syndrome, distal (ISO)

chromosome 22q11.2 microduplication syndrome (ISO)

DiGeorge syndrome (ISO)

epilepsy (ISO)

episodic ataxia (ISO)

genetic disease (ISO)

hemorrhagic disease (ISO)

immunodeficiency 51 (ISO)

intellectual disability (ISO)

megacolon (ISO)

Neurodevelopmental Disorders (ISO)

Polyarteritis Nodosa, Childhood-Onset (ISO)

primary immunodeficiency disease (ISO)

schizophrenia (ISO)

velocardiofacial syndrome (ISO)

Venous Thrombosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

chloroethene (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

epoxiconazole (ISO)

flutamide (EXP)

gentamycin (EXP)

indole-3-methanol (EXP)

methimazole (EXP)

nickel sulfate (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

pirinixic acid (ISO)

quercetin (ISO)

rotenone (EXP)

sulfadimethoxine (EXP)

sunitinib (ISO)

thioacetamide (EXP)

topotecan (EXP)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

Golgi organization (IBA)

protein secretion (IBA)

Cellular Component

cytoplasm (ISO)

cytosol (ISO)

Golgi apparatus (IBA,ISO)

mitochondrion (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:18775783	PMID:26805781

Genomics

Comparative Map Data

Tango2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	96,150,292 - 96,196,883 (+)	NCBI		GRCr8
mRatBN7.2	11	82,645,978 - 82,692,574 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	82,645,974 - 82,692,574 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	91,377,966 - 91,420,961 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	84,039,194 - 84,082,189 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	83,092,706 - 83,135,702 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	86,793,959 - 86,840,556 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	86,797,557 - 86,840,573 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	89,887,900 - 89,934,494 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	84,643,644 - 84,686,639 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	84,702,391 - 84,727,234 (+)	NCBI
Celera	11	81,426,587 - 81,469,582 (+)	NCBI		Celera
Cytogenetic Map	11	q23	NCBI

TANGO2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	20,017,023 - 20,067,164 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	20,017,014 - 20,067,164 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	20,004,546 - 20,054,687 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	18,388,631 - 18,433,447 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	22	3,859,834 - 3,904,651 (+)	NCBI		Celera
Cytogenetic Map	22	q11.21	NCBI
HuRef	22	3,629,293 - 3,673,868 (+)	NCBI		HuRef
CHM1_1	22	20,008,340 - 20,053,153 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	22	20,394,641 - 20,444,782 (+)	NCBI		T2T-CHM13v2.0

Tango2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Build 34	1	157,072,134 - 157,126,528	NCBI
GRCm39	16	18,118,689 - 18,165,962 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	18,118,689 - 18,165,967 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	18,300,825 - 18,348,098 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	18,300,825 - 18,348,103 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	18,300,918 - 18,344,025 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	18,214,388 - 18,238,008 (-)	NCBI		MGSCv36	mm8
Celera	16	18,873,570 - 18,916,677 (-)	NCBI		Celera
Cytogenetic Map	16	A3	NCBI
cM Map	16	11.34	NCBI

Tango2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	18,036,477 - 18,074,213 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955442	18,036,477 - 18,074,036 (-)	NCBI	ChiLan1.0	ChiLan1.0

TANGO2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	29,645,067 - 29,694,816 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	32,192,466 - 32,241,711 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	2,779,217 - 2,826,445 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	18,449,381 - 18,497,886 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	18,449,387 - 18,497,886 (+)	Ensembl	panpan1.1		panPan2

TANGO2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	29,265,489 - 29,303,814 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	29,266,256 - 29,304,164 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	29,224,376 - 29,262,736 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	30,669,587 - 30,707,941 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	30,669,585 - 30,707,909 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	28,717,451 - 28,755,795 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	28,342,814 - 28,381,158 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	29,427,808 - 29,466,174 (-)	NCBI		UU_Cfam_GSD_1.0

Tango2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	138,780,367 - 138,819,275 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936619	3,934,314 - 3,975,240 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936619	3,934,791 - 3,973,695 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TANGO2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	51,443,638 - 51,464,367 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	51,443,597 - 51,464,370 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	55,080,233 - 55,100,997 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TANGO2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	5,672,758 - 5,717,574 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	5,672,180 - 5,701,361 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666085	1,211,121 - 1,263,900 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tango2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624747	647,571 - 686,870 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tango2
148 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	247
Count of miRNA genes:	151
Interacting mature miRNAs:	170
Transcripts:	ENSRNOT00000046594
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
724554	Iddm17	Insulin dependent diabetes mellitus QTL 17		0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	18976208	86241447	Rat
724563	Uae10	Urinary albumin excretion QTL 10	6		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	11	27672410	82846715	Rat
1581565	Pur10	Proteinuria QTL 10		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	44803318	82846466	Rat
1581572	Uae35	Urinary albumin excretion QTL 35		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	44803318	82846466	Rat
724561	Plsm4	Polydactyly-luxate syndrome (PLS) morphotypes QTL 4		0.0003	forelimb integrity trait (VT:0010562)	front foot phalanges count (CMO:0001947)	11	54457534	86241447	Rat
4889521	Gluco62	Glucose level QTL 62	2.82	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	55136729	82993457	Rat
7411658	Foco27	Food consumption QTL 27	16.2	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	11	56351424	86241447	Rat
10058954	Gmadr7	Adrenal mass QTL 7	2.49	0.0049	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	60346590	86241447	Rat
634339	Niddm50	Non-insulin dependent diabetes mellitus QTL 50	3.32		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	11	66422148	86241447	Rat
1354593	Stl12	Serum triglyceride level QTL 12	3.36		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	11	66422148	86241447	Rat
1354656	Bvd3	Brain ventricular dilatation QTL 3	3.64	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	11	69446070	82846715	Rat
10450831	Scl80	Serum cholesterol level QTL 80	4.7	0.01	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	11	76957131	83051965	Rat
2302043	Pia27	Pristane induced arthritis QTL 27	18.6	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	11	82566545	83440803	Rat

Markers in Region

RH144497

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	82,684,364 - 82,684,570 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	86,832,348 - 86,832,553	NCBI	Rnor6.0
Rnor_5.0	11	89,926,286 - 89,926,491	UniSTS	Rnor5.0
RGSC_v3.4	11	84,678,432 - 84,678,637	UniSTS	RGSC3.4
Celera	11	81,461,375 - 81,461,580	UniSTS
RH 3.4 Map	11	697.3	UniSTS
Cytogenetic Map	11	q23	UniSTS

BE102735

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	82,662,366 - 82,662,570 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	86,810,353 - 86,810,556	NCBI	Rnor6.0
Rnor_5.0	11	89,904,291 - 89,904,494	UniSTS	Rnor5.0
RGSC_v3.4	11	84,656,436 - 84,656,639	UniSTS	RGSC3.4
Celera	11	81,439,380 - 81,439,583	UniSTS
RH 3.4 Map	11	699.4	UniSTS
Cytogenetic Map	11	q23	UniSTS

AI763447

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	82,692,216 - 82,692,357 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	86,840,199 - 86,840,339	NCBI	Rnor6.0
Rnor_5.0	11	89,934,137 - 89,934,277	UniSTS	Rnor5.0
RGSC_v3.4	11	84,686,283 - 84,686,423	UniSTS	RGSC3.4
Celera	11	81,469,226 - 81,469,366	UniSTS
RH 3.4 Map	11	700.2	UniSTS
Cytogenetic Map	11	q23	UniSTS

BE119158

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	82,687,015 - 82,687,174 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	86,834,999 - 86,835,157	NCBI	Rnor6.0
Rnor_5.0	11	89,928,937 - 89,929,095	UniSTS	Rnor5.0
RGSC_v3.4	11	84,681,083 - 84,681,241	UniSTS	RGSC3.4
Celera	11	81,464,026 - 81,464,184	UniSTS
RH 3.4 Map	11	699.7	UniSTS
Cytogenetic Map	11	q23	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	27	18	7	18	5	8	68	29	17	8	5
Low			30	23	12	23	3	3	6	6	24	3	3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088502	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088503	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088504	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088505	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088507	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088508	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088509	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088510	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088513	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088514	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088516	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270651	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270652	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270654	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005491043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC121199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213583	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000046594 ⟹ ENSRNOP00000044441

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	82,649,552 - 82,692,574 (+)	Ensembl
Rnor_6.0 Ensembl	11	86,797,561 - 86,840,555 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000083049 ⟹ ENSRNOP00000070354

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	82,649,573 - 82,692,572 (+)	Ensembl
Rnor_6.0 Ensembl	11	86,797,557 - 86,840,573 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000103259 ⟹ ENSRNOP00000081064

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	82,645,974 - 82,692,572 (+)	Ensembl

RefSeq Acc Id:

NM_001108323 ⟹ NP_001101793

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,887 - 96,196,882 (+)	NCBI
mRatBN7.2	11	82,649,575 - 82,692,573 (+)	NCBI
Rnor_6.0	11	86,797,561 - 86,840,555 (+)	NCBI
Rnor_5.0	11	89,887,900 - 89,934,494 (+)	NCBI
RGSC_v3.4	11	84,643,644 - 84,686,639 (+)	RGD
Celera	11	81,426,587 - 81,469,582 (+)	RGD

Sequence:

show sequence

GTGAGCGGCGGGTGGCTGGGGCTAGCAGTCTGCGCTCCTGGCGGGGCTGACCCACGGTCGGGCT
CCGGGCTCTTGGAACGCGGTCTGGACCAGACCTCGTGACCGTGCGAGCAAAGCCACCCCTGCAA
CCCATGTGCATCATCTTCTTTAAGTTCGATCCTCGTCCCGTTTCCAAAAATGCGTACAGGCTCA
TCCTGGCAGCCAACAGAGATGAATCCTACCACAGGCCGTCCAAGTTGGCAGACTTCTGGGAGAA
CAACAGCGAGATCCTCAGTGGGCTCGACATGGAAGAAGGCAAGGCAGGAGGAACATGGCTGGGC
ATCAGCACACGCGGGAAGCTGGGGGCACTCACCAACTACCTACAGCCCCGGCAAGAGCCAGACG
CCCGCGGCAGAGGTGAACTTGTGTCTCACTTTCTGACCAGTGACATGGACAGCCTGTCCTACCT
GAAGAAGGTCTCTACAGAGGGGCACCTATACAACGGCTTTAACCTCATAGCAGCTGACCTAAGC
ACAGCAAAAGGAGATGTTGTTTGCTACTATGGAAACCGGGGGGAGCCTGAGCCTATTGTCTTGA
CACCAGGAACCTATGGGCTAAGCAATGCCCTGCTGGAGACGCCCTGGAAGAAGCTGTGCTTTGG
CAAGCAACTCTTCACGGAAGCAGTGGAGCGGAGCGAGTCACTCCCTAAGGACATTCTTGTCACC
CAGCTCCTAGAAGTCCTCAACAATGAGGAGGCACAGCTGCCAGACCCAGCCATTGAGGACCAGG
GCCAGGAGTATATTCAGCCAATACTGAGCAAGTATGCAGCTGTGTGTGTCCGCTCTGCCACCTA
TGGCACCAGAACCAACACCATCATCCTTGTGGATGCAGATGGCCATGTGACCTTCACAGAACGA
AGCATGCTGGACAAAGACACCTCCTGCTGGGAGACCAACACCTATGAGTTCACACTACAGAGTT
AGTCACTGCCAGGCTCCTAAGGGCCAGCATGGACAGGAACCTTTGGTGGCCACCCTGCATGTCT
GGCTCAGCCAGCATCCCTAGGACCAGGTCCTTCTGATCTGTGTCCTCGTATTCAGCTCAGGGTT
TGTCTTTGTACCAATGGAGAATGGCAGAGTCAAATACTAGGTCTGAGTTGGGCCTAGGTGTATC
CTATGTGAACACACGTACCTTGGTCAGCCCCACCACTACTGTGTACACAGACACGTGCACCTTA
CTGATGAGCAGGGTTATGCCTCTCACCTCACATGTTTGGCAAGTGGGTCTCTTCTTCCCTGGAC
AGGTAACAAAAGCAGACTTTTTTTTTTTTTTTAGAAACTGGAGACCCTGTATTTGTTTGCGTTC
AGTAGTTCCGTATGCACAAGGACTCTGTGTGCATTTGCTCAATGCTGAGGTGTGGAACCTGGGA
TCTCTTAGGCCCCTGCTTGCCCAGGACTGTGGGTTCTGAGCAAGACCATTTCACCAAATGGCTC
ACGCAGCCCCTGCCGTCTCTCACTGTCCGTGTTATAAGCTGTACACCATGGGATGTGAACTCGA
ATGTGCACAGTTGATAATAAAACTTTGAGGCTGGA

hide sequence

RefSeq Acc Id:

XM_017598030 ⟹ XP_017453519

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,742 - 96,196,883 (+)	NCBI
mRatBN7.2	11	82,649,422 - 82,692,574 (+)	NCBI
Rnor_6.0	11	86,797,448 - 86,840,556 (+)	NCBI

Sequence:

show sequence

CTCGCTACTGCGCTCAATAGGGAGCGCTCTGGCGGCGGGCCGGGCCGGTCCTGGGCTGGCAGCT
AAGGTGCGCGGGTGCGGCACCCGGAAGTCGGCGGCGGCGGAGGCGACCTCGTGACCGTGCGAGC
AAAGCCACCCCTGCAACCCATGTGCATCATCTTCTTTAAGTTCGATCCTCGTCCCGTTTCCAAA
AATGCGTACAGGCTCATCCTGGCAGCCAACAGAGATGAATCCTACCACAGGCCGTCCAAGTTGG
CAGACTTCTGGGAGAACAACAGCGAGATCCTCAGTGGGCTCGACATGGAAGAAGGCAAGGCAGG
AGGAACATGGCTGGGCATCAGCACACGCGGGAAGCTGGGGGCACTCACCAACTACCTACAGCCC
CGGCAAGAGCCAGACGCCCGCGGCAGAGGTGAACTTGTGTCTCACTTTCTGACCAGTGACATGG
ACAGCCTGTCCTACCTGAAGAAGGTCTCTACAGAGGGGCACCTATACAACGGCTTTAACCTCAT
AGCAGCTGACCTAAGCACAGCAAAAGGAGATGTTGTTTGCTACTATGGAAACCGGGGGGAGCCT
GAGCCTATTGTCTTGACACCAGGAACCTATGGGCTAAGCAATGCCCTGCTGGAGACGCCCTGGA
AGAAGCTGTGCTTTGGCAAGCAACTCTTCACGGAAGCAGTGGAGCGGAGCGAGTCACTCCCTAA
GGACATTCTTGTCACCCAGCTCCTAGAAGTCCTCAACAATGAGGAGGCACAGCTGCCAGACCCA
GCCATTGAGGACCAGGGCCAGGAGTATATTCAGCCAATACTGAGCAAGTATGCAGCTGTGTGTG
TCCGCTCTGCCACCTATGGCACCAGAAACTGGAGACCCTGTATTTGTTTGCGTTCAGTAGTTCC
GTATGCACAAGGACTCTGTGTGCATTTGCTCAATGCTGAGGTGTGGAACCTGGGATCTCTTAGG
CCCCTGCTTGCCCAGGACTGTGGGTTCTGAGCAAGACCATTTCACCAAATGGCTCACGCAGCCC
CTGCCGTCTCTCACTGTCCGTGTTATAAGCTGTACACCATGGGATGTGAACTCGAATGTGCACA
GTTGATAATAAAACTTTGAGGCTGGAA

hide sequence

RefSeq Acc Id:

XM_017598031 ⟹ XP_017453520

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,842 - 96,196,883 (+)	NCBI
mRatBN7.2	11	82,649,524 - 82,692,574 (+)	NCBI
Rnor_6.0	11	86,797,563 - 86,840,556 (+)	NCBI

Sequence:

show sequence

GAGCGGCGGGTGGCTGGGGCTAGCAGTCTGCGCTCCTGGCGGGGCTGACCCACGGTCGGGCTCC
GGGCTCTTGGAACGCGGTCTGGACCAGACCTCGTGACCGTGCGAGCAAAGCCACCCCTGCAACC
CATGTGCATCATCTTCTTTAAGTTCGATCCTCGTCCCGTTTCCAAAAATGCGTACAGGCTCATC
CTGGCAGCCAACAGAGATGAATCCTACCACAGGCCGTCCAAGTTGGCAGACTTCTGGGAGAACA
ACAGCGAGATCCTCAGTGGGCTCGACATGGAAGAAGGCAAGGCAGGAGGAACATGGCTGGGCAT
CAGCACACGCGGGAAGCTGGGGGCACTCACCAACTACCTACAGCCCCGGCAAGAGCCAGACGCC
CGCGGCAGAGGTGAACTTGTGTCTCACTTTCTGACCAGTGACATGGACAGCCTGTCCTACCTGA
AGAAGGTCTCTACAGAGGGGCACCTATACAACGGCTTTAACCTCATAGCAGCTGACCTAAGCAC
AGCAAAAGGAGATGTTGTTTGCTACTATGGAAACCGGGGGGAGCCTGAGCCTATTGTCTTGACA
CCAGGAACCTATGGGCTAAGCAATGCCCTGCTGGAGACGCCCTGGAAGAAGCTGTGCTTTGGCA
AGCAACTCTTCACGGAAGCAGTGGAGCGGAGCGAGTCACTCCCTAAGGACATTCTTGTCACCCA
GCTCCTAGAAGTCCTCAACAATGAGGAGGCACAGCTGCCAGACCCAGCCATTGAGGACCAGGGC
CAGGAGTATATTCAGCCAATACTGAGCAAGTATGCAGCTGTGTGTGTCCGCTCTGCCACCTATG
GCACCAGAAACTGGAGACCCTGTATTTGTTTGCGTTCAGTAGTTCCGTATGCACAAGGACTCTG
TGTGCATTTGCTCAATGCTGAGGTGTGGAACCTGGGATCTCTTAGGCCCCTGCTTGCCCAGGAC
TGTGGGTTCTGAGCAAGACCATTTCACCAAATGGCTCACGCAGCCCCTGCCGTCTCTCACTGTC
CGTGTTATAAGCTGTACACCATGGGATGTGAACTCGAATGTGCACAGTTGATAATAAAACTTTG
AGGCTGGAA

hide sequence

RefSeq Acc Id:

XM_017598033 ⟹ XP_017453522

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,744 - 96,196,883 (+)	NCBI
mRatBN7.2	11	82,649,423 - 82,692,574 (+)	NCBI
Rnor_6.0	11	86,797,449 - 86,840,556 (+)	NCBI

Sequence:

show sequence

TCGCTACTGCGCTCAATAGGGAGCGCTCTGGCGGCGGGCCGGGCCGGTCCTGGGCTGGCAGCTA
AGGTGCGCGGGTGCGGCACCCGGAAGTCGGCGGCGGCGGAGGCGACCTCGTGACCGTGCGAGCA
AAGCCACCCCTGCAACCCATGTGCATCATCTTCTTTAAGTTCGATCCTCGTCCCGTTTCCAAAA
ATGCGTACAGGCTCATCCTGGCAGCCAACAGAGATGAATCCTACCACAGGCCGTCCAAGTTGGC
AGACTTCTGGGAGAACAACAGCGAGATCCTCAGTGGGCTCGACATGGAAGAAGGCAAGGCAGGA
GGAACATGGCTGGGCATCAGCACACGCGGGAAGCTGGGGGCACTCACCAACTACCTACAGCCCC
GGCAAGAGCCAGACGCCCGCGGCAGAGGTGAACTTGTGTCTCACTTTCTGACCAGTGACATGGA
CAGCCTGTCCTACCTGAAGAAGGTCTCTACAGAGGGGCACCTATACAACGGCTTTAACCTCATA
GCAGCTGACCTAAGCACAGCAAAAGGAGATGTTGTTTGCTACTATGGAAACCGGGGGGAGCCTG
AGCCTATTGTCTTGACACCAGGAACCTATGGGCTAAGCAATGCCCTGCTGGAGACGCCCTGGAA
GAAGCTGTGCTTTGGCAAGCAACTCTTCACGGAAGCAGTGGAGCGGAGCGAGTCACTCCCTAAG
GACATTCTTGTCACCCAGCTCCTAGAAGTCCTCAACAATGAGGAGGCACAGCTGCCAGACCCAG
CCATTGAGGACCAGGGCCAGGAGTATATTCAGCCAATACTGAGCAAGTATGCAGCTGTGTGTGT
CCGCTCTGCCACCTATGGCACCAGAACCAACACCATCATCCTTGTGGATGCAGATGGCCATGTG
ACCTTCACAGAACGAAGCATGCTGGACAAAGACACCTCCTGCTGGGAGACCAACACCTATGAGT
TCACACTACAGAGTTAGTCACTGCCAGGCTCCTAAGGGCCAGCATGGACAGGAACCTTTGGTGG
CCACCCTGCATGTCTGGCTCAGCCAGCATCCCTAGGACCAGGTCCTTCTGATCTGTGTCCTCGT
ATTCAGCTCAGGGTTTGTCTTTGTACCAATGGAGAATGGCAGAGTCAAATACTAGGTCTGAGTT
GGGCCTAGGTGTATCCTATGTGAACACACGTACCTTGGTCAGCCCCACCACTACTGTGTACACA
GACACGTGCACCTTACTGATGAGCAGGGTTATGCCTCTCACCTCACATGTTTGGCAAGTGGGTC
TCTTCTTCCCTGGACAGGTAACAAAAGCAGACTTTTTTTTTTTTTTTAGAAACTGGAGACCCTG
TATTTGTTTGCGTTCAGTAGTTCCGTATGCACAAGGACTCTGTGTGCATTTGCTCAATGCTGAG
GTGTGGAACCTGGGATCTCTTAGGCCCCTGCTTGCCCAGGACTGTGGGTTCTGAGCAAGACCAT
TTCACCAAATGGCTCACGCAGCCCCTGCCGTCTCTCACTGTCCGTGTTATAAGCTGTACACCAT
GGGATGTGAACTCGAATGTGCACAGTTGATAATAAAACTTTGAGGCTGGAA

hide sequence

RefSeq Acc Id:

XM_039088502 ⟹ XP_038944430

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,841 - 96,196,883 (+)	NCBI
mRatBN7.2	11	82,649,523 - 82,692,574 (+)	NCBI

RefSeq Acc Id:

XM_039088503 ⟹ XP_038944431

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,738 - 96,196,883 (+)	NCBI
mRatBN7.2	11	82,649,420 - 82,692,574 (+)	NCBI

RefSeq Acc Id:

XM_039088504 ⟹ XP_038944432

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,150,293 - 96,196,883 (+)	NCBI
mRatBN7.2	11	82,645,980 - 82,692,574 (+)	NCBI

RefSeq Acc Id:

XM_039088505 ⟹ XP_038944433

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,882 - 96,196,883 (+)	NCBI
mRatBN7.2	11	82,649,654 - 82,692,574 (+)	NCBI

RefSeq Acc Id:

XM_039088506 ⟹ XP_038944434

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,841 - 96,196,883 (+)	NCBI
mRatBN7.2	11	82,649,523 - 82,692,574 (+)	NCBI

RefSeq Acc Id:

XM_039088507 ⟹ XP_038944435

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,841 - 96,196,883 (+)	NCBI
mRatBN7.2	11	82,649,523 - 82,692,574 (+)	NCBI

RefSeq Acc Id:

XM_039088508 ⟹ XP_038944436

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,842 - 96,196,883 (+)	NCBI
mRatBN7.2	11	82,649,523 - 82,692,574 (+)	NCBI

RefSeq Acc Id:

XM_039088509 ⟹ XP_038944437

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,842 - 96,196,883 (+)	NCBI
mRatBN7.2	11	82,649,524 - 82,692,574 (+)	NCBI

RefSeq Acc Id:

XM_039088510 ⟹ XP_038944438

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,743 - 96,196,883 (+)	NCBI
mRatBN7.2	11	82,649,422 - 82,692,574 (+)	NCBI

RefSeq Acc Id:

XM_039088513 ⟹ XP_038944441

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,977 - 96,196,883 (+)	NCBI
mRatBN7.2	11	82,649,578 - 82,692,574 (+)	NCBI

RefSeq Acc Id:

XM_039088514 ⟹ XP_038944442

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,841 - 96,196,883 (+)	NCBI
mRatBN7.2	11	82,649,522 - 82,692,574 (+)	NCBI

RefSeq Acc Id:

XM_039088515 ⟹ XP_038944443

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,841 - 96,196,883 (+)	NCBI
mRatBN7.2	11	82,649,522 - 82,692,574 (+)	NCBI

RefSeq Acc Id:

XM_039088516 ⟹ XP_038944444

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,150,292 - 96,196,883 (+)	NCBI
mRatBN7.2	11	82,645,978 - 82,692,574 (+)	NCBI

RefSeq Acc Id:

XM_039088517 ⟹ XP_038944445

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,842 - 96,196,883 (+)	NCBI
mRatBN7.2	11	82,649,523 - 82,692,574 (+)	NCBI

RefSeq Acc Id:

XM_039088518 ⟹ XP_038944446

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,842 - 96,196,641 (+)	NCBI
mRatBN7.2	11	82,649,524 - 82,692,332 (+)	NCBI

RefSeq Acc Id:

XM_039088519 ⟹ XP_038944447

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,842 - 96,194,061 (+)	NCBI
mRatBN7.2	11	82,649,524 - 82,689,639 (+)	NCBI

RefSeq Acc Id:

XM_039088520 ⟹ XP_038944448

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,842 - 96,196,883 (+)	NCBI
mRatBN7.2	11	82,649,524 - 82,692,574 (+)	NCBI

RefSeq Acc Id:

XM_039088521 ⟹ XP_038944449

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,842 - 96,196,883 (+)	NCBI
mRatBN7.2	11	82,649,524 - 82,692,574 (+)	NCBI

RefSeq Acc Id:

XM_039088522 ⟹ XP_038944450

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,743 - 96,196,883 (+)	NCBI
mRatBN7.2	11	82,649,422 - 82,692,574 (+)	NCBI

RefSeq Acc Id:

XM_039088523 ⟹ XP_038944451

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,843 - 96,193,909 (+)	NCBI
mRatBN7.2	11	82,649,524 - 82,689,702 (+)	NCBI

RefSeq Acc Id:

XM_063270650 ⟹ XP_063126720

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,740 - 96,196,883 (+)	NCBI

RefSeq Acc Id:

XM_063270651 ⟹ XP_063126721

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,976 - 96,196,883 (+)	NCBI

RefSeq Acc Id:

XM_063270652 ⟹ XP_063126722

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,877 - 96,196,883 (+)	NCBI

RefSeq Acc Id:

XM_063270654 ⟹ XP_063126724

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,741 - 96,196,883 (+)	NCBI

RefSeq Acc Id:

XM_063270655 ⟹ XP_063126725

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,842 - 96,196,883 (+)	NCBI

RefSeq Acc Id:

XM_063270656 ⟹ XP_063126726

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,882 - 96,196,883 (+)	NCBI

RefSeq Acc Id:

XM_063270657 ⟹ XP_063126727

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,743 - 96,196,883 (+)	NCBI

RefSeq Acc Id:

XR_005491043

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	96,153,842 - 96,196,766 (+)	NCBI
mRatBN7.2	11	82,649,524 - 82,692,458 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101793	(Get FASTA)	NCBI Sequence Viewer
	XP_017453519	(Get FASTA)	NCBI Sequence Viewer
	XP_017453520	(Get FASTA)	NCBI Sequence Viewer
	XP_017453522	(Get FASTA)	NCBI Sequence Viewer
	XP_038944430	(Get FASTA)	NCBI Sequence Viewer
	XP_038944431	(Get FASTA)	NCBI Sequence Viewer
	XP_038944432	(Get FASTA)	NCBI Sequence Viewer
	XP_038944433	(Get FASTA)	NCBI Sequence Viewer
	XP_038944434	(Get FASTA)	NCBI Sequence Viewer
	XP_038944435	(Get FASTA)	NCBI Sequence Viewer
	XP_038944436	(Get FASTA)	NCBI Sequence Viewer
	XP_038944437	(Get FASTA)	NCBI Sequence Viewer
	XP_038944438	(Get FASTA)	NCBI Sequence Viewer
	XP_038944441	(Get FASTA)	NCBI Sequence Viewer
	XP_038944442	(Get FASTA)	NCBI Sequence Viewer
	XP_038944443	(Get FASTA)	NCBI Sequence Viewer
	XP_038944444	(Get FASTA)	NCBI Sequence Viewer
	XP_038944445	(Get FASTA)	NCBI Sequence Viewer
	XP_038944446	(Get FASTA)	NCBI Sequence Viewer
	XP_038944447	(Get FASTA)	NCBI Sequence Viewer
	XP_038944448	(Get FASTA)	NCBI Sequence Viewer
	XP_038944449	(Get FASTA)	NCBI Sequence Viewer
	XP_038944450	(Get FASTA)	NCBI Sequence Viewer
	XP_038944451	(Get FASTA)	NCBI Sequence Viewer
	XP_063126720	(Get FASTA)	NCBI Sequence Viewer
	XP_063126721	(Get FASTA)	NCBI Sequence Viewer
	XP_063126722	(Get FASTA)	NCBI Sequence Viewer
	XP_063126724	(Get FASTA)	NCBI Sequence Viewer
	XP_063126725	(Get FASTA)	NCBI Sequence Viewer
	XP_063126726	(Get FASTA)	NCBI Sequence Viewer
	XP_063126727	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL77933	(Get FASTA)	NCBI Sequence Viewer
	EDL77934	(Get FASTA)	NCBI Sequence Viewer
	EDL77935	(Get FASTA)	NCBI Sequence Viewer
	EDL77936	(Get FASTA)	NCBI Sequence Viewer
	EDL77937	(Get FASTA)	NCBI Sequence Viewer
	EDL77938	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000044441
	ENSRNOP00000044441.3
	ENSRNOP00000070354
	ENSRNOP00000070354.1
	ENSRNOP00000081064.1

RefSeq Acc Id:

NP_001101793 ⟸ NM_001108323

- UniProtKB:

D3ZY86 (UniProtKB/TrEMBL), A6JSH0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MCIIFFKFDPRPVSKNAYRLILAANRDESYHRPSKLADFWENNSEILSGLDMEEGKAGGTWLGI
STRGKLGALTNYLQPRQEPDARGRGELVSHFLTSDMDSLSYLKKVSTEGHLYNGFNLIAADLST
AKGDVVCYYGNRGEPEPIVLTPGTYGLSNALLETPWKKLCFGKQLFTEAVERSESLPKDILVTQ
LLEVLNNEEAQLPDPAIEDQGQEYIQPILSKYAAVCVRSATYGTRTNTIILVDADGHVTFTERS
MLDKDTSCWETNTYEFTLQS

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RefSeq Acc Id:	XP_017453519 ⟸ XM_017598030
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I6G5G3 (UniProtKB/TrEMBL), A6JSG9 (UniProtKB/TrEMBL), A6JSH2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCIIFFKFDPRPVSKNAYRLILAANRDESYHRPSKLADFWENNSEILSGLDMEEGKAGGTWLGI STRGKLGALTNYLQPRQEPDARGRGELVSHFLTSDMDSLSYLKKVSTEGHLYNGFNLIAADLST AKGDVVCYYGNRGEPEPIVLTPGTYGLSNALLETPWKKLCFGKQLFTEAVERSESLPKDILVTQ LLEVLNNEEAQLPDPAIEDQGQEYIQPILSKYAAVCVRSATYGTRNWRPCICLRSVVPYAQGLC VHLLNAEVWNLGSLRPLLAQDCGF hide sequence

RefSeq Acc Id:	XP_017453522 ⟸ XM_017598033
- Peptide Label:	isoform X9
- UniProtKB:	D3ZY86 (UniProtKB/TrEMBL), A6JSH0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCIIFFKFDPRPVSKNAYRLILAANRDESYHRPSKLADFWENNSEILSGLDMEEGKAGGTWLGI STRGKLGALTNYLQPRQEPDARGRGELVSHFLTSDMDSLSYLKKVSTEGHLYNGFNLIAADLST AKGDVVCYYGNRGEPEPIVLTPGTYGLSNALLETPWKKLCFGKQLFTEAVERSESLPKDILVTQ LLEVLNNEEAQLPDPAIEDQGQEYIQPILSKYAAVCVRSATYGTRTNTIILVDADGHVTFTERS MLDKDTSCWETNTYEFTLQS hide sequence

RefSeq Acc Id:	XP_017453520 ⟸ XM_017598031
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I6G5G3 (UniProtKB/TrEMBL), A6JSG9 (UniProtKB/TrEMBL), A6JSH2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCIIFFKFDPRPVSKNAYRLILAANRDESYHRPSKLADFWENNSEILSGLDMEEGKAGGTWLGI STRGKLGALTNYLQPRQEPDARGRGELVSHFLTSDMDSLSYLKKVSTEGHLYNGFNLIAADLST AKGDVVCYYGNRGEPEPIVLTPGTYGLSNALLETPWKKLCFGKQLFTEAVERSESLPKDILVTQ LLEVLNNEEAQLPDPAIEDQGQEYIQPILSKYAAVCVRSATYGTRNWRPCICLRSVVPYAQGLC VHLLNAEVWNLGSLRPLLAQDCGF hide sequence

RefSeq Acc Id:

ENSRNOP00000070354 ⟸ ENSRNOT00000083049

RefSeq Acc Id:

ENSRNOP00000044441 ⟸ ENSRNOT00000046594

RefSeq Acc Id:	XP_038944444 ⟸ XM_039088516
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_038944432 ⟸ XM_039088504
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038944431 ⟸ XM_039088503
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038944438 ⟸ XM_039088510
- Peptide Label:	isoform X6
- UniProtKB:	A0A0G2JXP4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038944450 ⟸ XM_039088522
- Peptide Label:	isoform X17

RefSeq Acc Id:	XP_038944443 ⟸ XM_039088515
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_038944442 ⟸ XM_039088514
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038944436 ⟸ XM_039088508
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038944430 ⟸ XM_039088502
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038944435 ⟸ XM_039088507
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038944434 ⟸ XM_039088506
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038944445 ⟸ XM_039088517
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_038944437 ⟸ XM_039088509
- Peptide Label:	isoform X6
- UniProtKB:	A0A0G2JXP4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038944448 ⟸ XM_039088520
- Peptide Label:	isoform X16

RefSeq Acc Id:	XP_038944449 ⟸ XM_039088521
- Peptide Label:	isoform X17

RefSeq Acc Id:	XP_038944446 ⟸ XM_039088518
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_038944451 ⟸ XM_039088523
- Peptide Label:	isoform X18

RefSeq Acc Id:	XP_038944447 ⟸ XM_039088519
- Peptide Label:	isoform X15

RefSeq Acc Id:	XP_038944441 ⟸ XM_039088513
- Peptide Label:	isoform X6
- UniProtKB:	A0A0G2JXP4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038944433 ⟸ XM_039088505
- Peptide Label:	isoform X1

RefSeq Acc Id:

ENSRNOP00000081064 ⟸ ENSRNOT00000103259

RefSeq Acc Id:	XP_063126720 ⟸ XM_063270650
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063126724 ⟸ XM_063270654
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_063126727 ⟸ XM_063270657
- Peptide Label:	isoform X16

RefSeq Acc Id:	XP_063126725 ⟸ XM_063270655
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_063126722 ⟸ XM_063270652
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063126726 ⟸ XM_063270656
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_063126721 ⟸ XM_063270651
- Peptide Label:	isoform X8

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JXP4-F1-model_v2	AlphaFold	A0A0G2JXP4	1-286	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698316

Promoter ID:

EPDNEW_R8829

Type:

multiple initiation site

Name:

Tango2_1

Description:

transport and golgi organization 2 homolog

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	86,797,530 - 86,797,590	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310348	AgrOrtholog
BioCyc Gene	G2FUF-20656	BioCyc
Ensembl Genes	ENSRNOG00000030245	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000046594	ENTREZGENE
	ENSRNOT00000046594.6	UniProtKB/TrEMBL
	ENSRNOT00000083049.2	UniProtKB/TrEMBL
	ENSRNOT00000103259.1	UniProtKB/TrEMBL
InterPro	DUF833	UniProtKB/TrEMBL
KEGG Report	rno:360738	UniProtKB/TrEMBL
NCBI Gene	360738	ENTREZGENE
PANTHER	DUF833	UniProtKB/TrEMBL
	TRANSPORT AND GOLGI ORGANIZATION PROTEIN 2 HOMOLOG	UniProtKB/TrEMBL
Pfam	DUF833	UniProtKB/TrEMBL
PhenoGen	Tango2	PhenoGen
RatGTEx	ENSRNOG00000030245	RatGTEx
UniProt	A0A0G2JXP4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G5G3	ENTREZGENE, UniProtKB/TrEMBL
	A6JSG9	ENTREZGENE, UniProtKB/TrEMBL
	A6JSH0	ENTREZGENE, UniProtKB/TrEMBL
	A6JSH2	ENTREZGENE, UniProtKB/TrEMBL
	A6JSH4_RAT	UniProtKB/TrEMBL
	D3ZY86	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-07-09	Tango2	transport and golgi organization 2 homolog	Tango2	transport and golgi organization 2 homolog (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-01-02	Tango2	transport and golgi organization 2 homolog (Drosophila)	RGD1310348	similar to Ser/Thr-rich protein T10 in DGCR region	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1310348	similar to Ser/Thr-rich protein T10 in DGCR region	RGD1310348_predicted	similar to Ser/Thr-rich protein T10 in DGCR region (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1310348_predicted	similar to Ser/Thr-rich protein T10 in DGCR region (predicted)	LOC360738_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC360738_predicted	similar to Ser/Thr-rich protein T10 in DGCR region (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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