Msl3 (MSL complex subunit 3) - Rat Genome Database

Name: Msl3
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Msl3 (MSL complex subunit 3) Chinchilla lanigera

Analyze

Symbol:

Msl3

Name:

MSL complex subunit 3

RGD ID:

8871993

Description:

ENCODES a protein that exhibits DNA binding (ortholog); histone reader activity (ortholog); methylated histone binding (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH amenorrhea (ortholog); autistic disorder (ortholog); Basilicata-Akhtar syndrome (ortholog); FOUND IN MSL complex (ortholog); nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

male-specific lethal 3 homolog; male-specific lethal 3 homolog (Drosophila)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MSL3 (MSL complex subunit 3)	NCBI	Ortholog
Mus musculus (house mouse):	Msl3 (MSL complex subunit 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Msl3 (MSL complex subunit 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MSL3 (MSL complex subunit 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MSL3 (MSL complex subunit 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Msl3 (MSL complex subunit 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MSL3 (MSL complex subunit 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MSL3 (MSL complex subunit 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Msl3 (MSL complex subunit 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955544	1,523,310 - 1,541,019 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955544	1,523,369 - 1,541,012 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amenorrhea (ISO)

autistic disorder (ISO)

Basilicata-Akhtar syndrome (ISO)

Craniofacial Abnormalities (ISO)

Developmental Disabilities (ISO)

Facies (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Neurodevelopmental Disorders (ISO)

Neurologic Gait Disorders (ISO)

non-syndromic X-linked intellectual disability 104 (ISO)

X-linked monogenic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of DNA-templated transcription (ISO)

regulation of DNA-templated transcription (ISO)

Cellular Component

MSL complex (ISO)

nucleus (ISO)

Molecular Function

DNA binding (ISO)

histone reader activity (ISO)

methylated histone binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Msl3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955544	1,523,310 - 1,541,019 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955544	1,523,369 - 1,541,012 (-)	NCBI	ChiLan1.0	ChiLan1.0

MSL3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	11,758,159 - 11,775,772 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	11,758,159 - 11,775,772 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	11,776,278 - 11,793,891 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	11,686,199 - 11,703,793 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	X	15,904,870 - 15,922,463 (+)	NCBI		Celera
Cytogenetic Map	X	p22.2	NCBI
HuRef	X	9,555,123 - 9,572,080 (+)	NCBI		HuRef
CHM1_1	X	11,806,915 - 11,824,468 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	11,340,708 - 11,358,321 (+)	NCBI		T2T-CHM13v2.0

Msl3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	167,434,263 - 167,456,868 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	167,437,113 - 167,456,894 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	168,651,267 - 168,674,354 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	168,654,117 - 168,673,898 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	165,092,049 - 165,111,834 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	163,998,222 - 164,018,007 (-)	NCBI		MGSCv36	mm8
Celera	X	151,820,966 - 151,840,717 (-)	NCBI		Celera
Cytogenetic Map	X	F5	NCBI
cM Map	X	78.73	NCBI

Msl3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	29,210,388 - 29,228,060 (+)	NCBI		GRCr8
mRatBN7.2	X	25,638,029 - 25,655,698 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	25,637,804 - 25,655,697 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	26,633,073 - 26,650,631 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	30,054,150 - 30,071,708 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	26,296,795 - 26,314,394 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	27,015,826 - 27,033,562 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	27,015,884 - 27,033,555 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	27,420,494 - 27,438,244 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	46,330,790 - 46,348,467 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	26,048,467 - 26,066,050 (+)	NCBI		Celera
Cytogenetic Map	X	q13	NCBI

MSL3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	13,557,989 - 13,575,611 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	13,561,702 - 13,579,280 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	4,385,861 - 4,403,467 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	11,676,301 - 11,693,474 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	11,672,109 - 11,693,468 (+)	Ensembl	panpan1.1		panPan2

MSL3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	8,294,797 - 8,311,142 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	8,294,802 - 8,310,751 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	8,251,506 - 8,267,864 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	8,247,326 - 8,263,668 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	8,247,328 - 8,265,173 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	8,231,197 - 8,247,533 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	8,267,557 - 8,283,904 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	8,263,471 - 8,279,825 (+)	NCBI		UU_Cfam_GSD_1.0

Msl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	1,572,031 - 1,587,002 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	1,572,014 - 1,587,011 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	1,572,037 - 1,587,002 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MSL3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	8,519,370 - 8,535,249 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	8,519,366 - 8,535,249 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	9,292,676 - 9,308,561 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MSL3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	10,259,700 - 10,292,097 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	10,259,711 - 10,277,817 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666056	12,009,518 - 12,039,348 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Msl3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624882	2,591,308 - 2,613,049 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624882	2,594,453 - 2,614,076 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005411381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005411382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005411383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013508188	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01071727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01000560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000000107 ⟹ ENSCLAP00000000080

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955544	1,523,310 - 1,541,019 (-)	Ensembl

RefSeq Acc Id:

ENSCLAT00000000108 ⟹ ENSCLAP00000000081

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955544	1,524,012 - 1,540,874 (-)	Ensembl

RefSeq Acc Id:

XM_005411381 ⟹ XP_005411438

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955544	1,523,369 - 1,541,012 (-)	NCBI

Sequence:

show sequence

CGCTCCGCCCGCCCCGGAGCCTCGCCCTCCGCCGCGATGAGCAAATGAACGCAAGCGAGGGCAT
GAAATTTAAATTCCATTCAGGAGAGAAAGTGCTGTGCTTCGAGCCAGACCCCACCAAGGCGCGG
GTGCTGTACGATGCCAAGATTGTCGATGTTATTGTTGGGAAAGACGAGAAAGGCAGAAAGATCC
CTGAATATCTGATCCATTTTAATGGTTGGAACAGAAGCTGGGATAGATGGGCAGCCGAAGATCA
TGTGCTTCGTGATACAGATGAAAATCGTAGATTACAGCGTAAATTGGCAAGAAAAGCTGTAGCT
CGCCTGAGAAGCACTGGAAGAAAGAAGAAGCGCTGCAGGTTGCCTGGTGTTGACACTGTCTTAA
AAAGCTCCCCTACTGCAGAAAAAAATGAAAATGATGAAAACTCCATAAGCACTTCCTCTGATGA
CAGTGAAGAAAAGGATGAAGAAATAAGTGACGAAAGTGATAGTGAAGAAAAGCCTGAAGTGAAA
GAGGAACTAGAGCTGCAAACAAGAAAGGAAATGGAAGAACGAACAATAACTATAGACATCCCTG
AAGTTCTGAAGAAGCAACTCGAAGATGATTGTTACTATATTAACAGGAGGAAACGGTTAGTGAA
ACTTCCATGCCAGACCAACATCATAACTATTTTGGAATCCTACGTGAAGCATTTTGCTATCAAT
GCAGCCTTTTCAGCCAATGAGAGGCCTCGTCACCATCATGCCATGATGCATGCCAACATGAATG
TGCATTATATTCCGGCAGAAAAGAACGTTGACCTTTGTAAGGAGATGGTGGATGGGCTGAGAAT
AACCTTTGATTATACGCTCCCGTTGGTTCTGCTCTACCCATATGAACAAGCTCAGTATAAAAAG
GTGACATCGTCTAAATTTTTTCTTCCAATTAAAGAAAGTGCTACAAACACTAATAGGAGCCAGG
AGGAGCTCTCTCCCAGTCCACCTTTGTTGAATCCGTCCACGCCACAGTCCACAGAGAGTCAGCC
GACTACTGGTGAACCTGCCACCCCCAAGAGGCGCAAAGCCGAGCCAGAAGCCATGCAGTCTCTG
CGGCGGTCCACACGCCACAGCACCAATTGTGACCGGCTGTCCGAGAGCAGCGCCTCGCCGCAGC
CCAAGAGGCGGCAGCAGGACACATCCGCCAGCATGCCCAAGCTGTTCCTGCACCTGGAAAAGAA
GACACCTGTTCATAGCAGATCGTCTTCCCCCATTCCTCTGACTCCTAGTAAGGAAGGGAGTGGT
GTGTTTGCTGGCTTTGAAGGTAGAAGAACTAATGAAATAAATGAGGTCCTCTCCTGGAAGCTTG
TGCCTGACAATTACCCTCCAGGTGACCAGCCACCTCCACCTTCTTATATTTACGGGGCACAGCA
TTTGCTGCGATTGTTTGTAAAACTTCCAGAAATCCTTGGAAAGATGTCCTTTTCTGAGAAGAAT
CTGAAAGCTTTACTGAAGCACTTTGATCTTTTTCTGAGGTTTTTAGCAGAATACCATGATGACT
TCTTCCCAGAGTCAGCTTATGTCGCTGCGTGTGAGGCACACTATAGCACCAAGAACCCCAGGGC
AATTTATTAACGTCTGGATGGTTCTGTGAGGACATGCCTGTTTGGCTTTGTATTCTGGATTTCA
GGTGACGAACTAGTGAGACAGCAGGCCTTCTTTTTTGTTTTTTTTTTTTTGGTCCTTTTGCGAC
AGGGTGAATTGCCCACTTACTGTAGTATCTCTGTTAAGAATTGTTTCCCAGGTGCCTGAACATA
GCTCAGATAAAACCCTTACTGTTACATAGGACATCTGTGGTGGCAGGCAAAGACAGCTGTTCAT
AGTGAAACGTCCGGGAGAGTGTACATAAGTTAGGCTGTTTTGGAAGACATTGCAGCTAATTGTT
AGTGAGAGCCACATTGTTGAGTTATTTGTTAGCACTAAAGAAGATATTTTTGCAGACTATTTTC
ATGCTTGTGGTGAGGCTGAGCGACTCTGCCCAACCGATTTTAGTTGGTACTTGGAAACCACGAA
GTTGTCTCAGAGTCTTAGAGGAGATATTGATGGCCAAAGGAAATTTGCAGCTATACATTTACTT
GTAACAGTTCCCTCTCTATAAAATGTTATTTTTGGAGATCTAAATAAAGCATTGCCTGTCTTGT
TTGAGATTTTACAACTGTACTTTGTTGAGTAATGTCATGGTTCCCTTTCTATAAAATGTTATTT
TTGGTGATCTAAA

hide sequence

RefSeq Acc Id:

XM_005411382 ⟹ XP_005411439

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955544	1,523,369 - 1,541,012 (-)	NCBI

Sequence:

show sequence

CGCTCCGCCCGCCCCGGAGCCTCGCCCTCCGCCGCGATGAGCAAATGAACGCAAGCGAGGGCAT
GAAATTTAAATTCCATTCAGGAGAGAAAGTGCTGTGCTTCGAGCCAGACCCCACCAAGGCGCGG
GTGCTGTACGATGCCAAGATTGTCGATGTTATTGTTGGGAAAGACGAGAAAGGCAGAAAGATCC
CTGAATATCTGATCCATTTTAATGGTTGGAACAGAAGGAGAAGCACTGGAAGAAAGAAGAAGCG
CTGCAGGTTGCCTGGTGTTGACACTGTCTTAAAAAGCTCCCCTACTGCAGAAAAAAATGAAAAT
GATGAAAACTCCATAAGCACTTCCTCTGATGACAGTGAAGAAAAGGATGAAGAAATAAGTGACG
AAAGTGATAGTGAAGAAAAGCCTGAAGTGAAAGAGGAACTAGAGCTGCAAACAAGAAAGGAAAT
GGAAGAACGAACAATAACTATAGACATCCCTGAAGTTCTGAAGAAGCAACTCGAAGATGATTGT
TACTATATTAACAGGAGGAAACGGTTAGTGAAACTTCCATGCCAGACCAACATCATAACTATTT
TGGAATCCTACGTGAAGCATTTTGCTATCAATGCAGCCTTTTCAGCCAATGAGAGGCCTCGTCA
CCATCATGCCATGATGCATGCCAACATGAATGTGCATTATATTCCGGCAGAAAAGAACGTTGAC
CTTTGTAAGGAGATGGTGGATGGGCTGAGAATAACCTTTGATTATACGCTCCCGTTGGTTCTGC
TCTACCCATATGAACAAGCTCAGTATAAAAAGGTGACATCGTCTAAATTTTTTCTTCCAATTAA
AGAAAGTGCTACAAACACTAATAGGAGCCAGGAGGAGCTCTCTCCCAGTCCACCTTTGTTGAAT
CCGTCCACGCCACAGTCCACAGAGAGTCAGCCGACTACTGGTGAACCTGCCACCCCCAAGAGGC
GCAAAGCCGAGCCAGAAGCCATGCAGTCTCTGCGGCGGTCCACACGCCACAGCACCAATTGTGA
CCGGCTGTCCGAGAGCAGCGCCTCGCCGCAGCCCAAGAGGCGGCAGCAGGACACATCCGCCAGC
ATGCCCAAGCTGTTCCTGCACCTGGAAAAGAAGACACCTGTTCATAGCAGATCGTCTTCCCCCA
TTCCTCTGACTCCTAGTAAGGAAGGGAGTGGTGTGTTTGCTGGCTTTGAAGGTAGAAGAACTAA
TGAAATAAATGAGGTCCTCTCCTGGAAGCTTGTGCCTGACAATTACCCTCCAGGTGACCAGCCA
CCTCCACCTTCTTATATTTACGGGGCACAGCATTTGCTGCGATTGTTTGTAAAACTTCCAGAAA
TCCTTGGAAAGATGTCCTTTTCTGAGAAGAATCTGAAAGCTTTACTGAAGCACTTTGATCTTTT
TCTGAGGTTTTTAGCAGAATACCATGATGACTTCTTCCCAGAGTCAGCTTATGTCGCTGCGTGT
GAGGCACACTATAGCACCAAGAACCCCAGGGCAATTTATTAACGTCTGGATGGTTCTGTGAGGA
CATGCCTGTTTGGCTTTGTATTCTGGATTTCAGGTGACGAACTAGTGAGACAGCAGGCCTTCTT
TTTTGTTTTTTTTTTTTTGGTCCTTTTGCGACAGGGTGAATTGCCCACTTACTGTAGTATCTCT
GTTAAGAATTGTTTCCCAGGTGCCTGAACATAGCTCAGATAAAACCCTTACTGTTACATAGGAC
ATCTGTGGTGGCAGGCAAAGACAGCTGTTCATAGTGAAACGTCCGGGAGAGTGTACATAAGTTA
GGCTGTTTTGGAAGACATTGCAGCTAATTGTTAGTGAGAGCCACATTGTTGAGTTATTTGTTAG
CACTAAAGAAGATATTTTTGCAGACTATTTTCATGCTTGTGGTGAGGCTGAGCGACTCTGCCCA
ACCGATTTTAGTTGGTACTTGGAAACCACGAAGTTGTCTCAGAGTCTTAGAGGAGATATTGATG
GCCAAAGGAAATTTGCAGCTATACATTTACTTGTAACAGTTCCCTCTCTATAAAATGTTATTTT
TGGAGATCTAAATAAAGCATTGCCTGTCTTGTTTGAGATTTTACAACTGTACTTTGTTGAGTAA
TGTCATGGTTCCCTTTCTATAAAATGTTATTTTTGGTGATCTAAA

hide sequence

RefSeq Acc Id:

XM_005411383 ⟹ XP_005411440

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955544	1,524,018 - 1,541,012 (-)	NCBI

Sequence:

show sequence

CGCTCCGCCCGCCCCGGAGCCTCGCCCTCCGCCGCGATGAGCAAATGAACGCAAGCGAGGGCAT
GAAATTTAAATTCCATTCAGGAGAGAAAGTGCTGTGCTTCGAGCCAGACCCCACCAAGGCGCGG
GTGCTGTACGATGCCAAGATTGTCGATGTTATTGTTGGGAAAGACGAGAAAGGCAGAAAGATCC
CTGAATATCTGATCCATTTTAATGGTTGGAACAGAAGCTGGGATAGATGGGCAGCCGAAGATCA
TGTGCTTCGTGATACAGATGAAAATCGTAGATTACAGCGTAAATTGGCAAGAAAAGCTGTAGCT
CGCCTGAGAAGCACTGGAAGAAAGAAGAAGCGCTGCAGGTTGCCTGGTGTTGACACTGTCTTAA
AAAGCTCCCCTACTGCAGAAAAAAATGAAAATGATGAAAACTCCATAAGCACTTCCTCTGATGA
CAGTGAAGAAAAGGATGAAGAAATAAGTGACGAAAGTGATAGTGAAGAAAAGCCTGAAGTGAAA
GAGGAACTAGAGCTGCAAACAAGAAAGGAAATGGAAGAACGAACAATAACTATAGACATCCCTG
AAGTTCTGAAGAAGCAACTCGAAGATGATTGTTACTATATTAACAGGAGGAAACGGTTAGTGAA
ACTTCCATGCCAGACCAACATCATAACTATTTTGGAATCCTACGTGAAGCATTTTGCTATCAAT
GCAGCCTTTTCAGCCAATGAGAGGCCTCGTCACCATCATGCCATGATGCATGCCAACATGAATG
TGCATTATATTCCGGCAGAAAAGAACGTTGACCTTTGTAAGGAGATGGTGGATGGGCTGAGAAT
AACCTTTGATTATACGCTCCCGTTGGTTCTGCTCTACCCATATGAACAAGCTCAGTATAAAAAG
GTGACATCGTCTAAATTTTTTCTTCCAATTAAAGAAAGTGCTACAAACACTAATAGGAGCCAGG
AGGAGCTCTCTCCCAGTCCACCTTTGTTGAATCCGTCCACGCCACAGTCCACAGAGAGTCAGCC
GACTACTGGTGAACCTGCCACCCCCAAGAGGCGCAAAGCCGAGCCAGAAGCCATGCAGTCTCTG
CGGCGGTCCACACGCCACAGCACCAATTGTGACCGGCTGTCCGAGAGCAGCGCCTCGCCGCAGC
CCAAGAGGCGGCAGCAGGACACATCCGCCAGCATGCCCAAGCTGTTCCTGCACCTGGAAAAGAA
GACACCTGTTCATAGCAGATCGTCTTCCCCCATTCCTCTGACTCCTAGTAAGGAAGGGAGTGGT
GTGTTTGCTGGCTTTGAAGGTAGAAGAACTAATGAAATAAATGAGGTCCTCTCCTGGAAGCTTG
TGCCTGACAATTACCCTCCAGGTGACCAGCCACCTCCACCTTCTTATATTTACGGGGCACAGCA
TTTGCTGCGATTGTTTGGTTTTTAGCAGAATACCATGATGACTTCTTCCCAGAGTCAGCTTATG
TCGCTGCGTGTGAGGCACACTATAGCACCAAGAACCCCAGGGCAATT

hide sequence

RefSeq Acc Id:

XM_013508188 ⟹ XP_013363642

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955544	1,523,369 - 1,538,691 (-)	NCBI

Sequence:

show sequence

GAGAAGCACTGGAAGAAAGAAGAAGCGCTGCAGGTTGCCTGGTGTTGACACTGTCTTAAAAAGC
TCCCCTACTGCAGAAAAAAATGAAAATGATGAAAACTAAAGAGGAACTAGAGCTGCAAACAAGA
AAGGAAATGGAAGAACGAACAATAACTATAGACATCCCTGAAGTTCTGAAGAAGCAACTCGAAG
ATGATTGTTACTATATTAACAGGAGGAAACGGTTAGTGAAACTTCCATGCCAGACCAACATCAT
AACTATTTTGGAATCCTACGTGAAGCATTTTGCTATCAATGCAGCCTTTTCAGCCAATGAGAGG
CCTCGTCACCATCATGCCATGATGCATGCCAACATGAATGTGCATTATATTCCGGCAGAAAAGA
ACGTTGACCTTTGTAAGGAGATGGTGGATGGGCTGAGAATAACCTTTGATTATACGCTCCCGTT
GGTTCTGCTCTACCCATATGAACAAGCTCAGTATAAAAAGGTGACATCGTCTAAATTTTTTCTT
CCAATTAAAGAAAGTGCTACAAACACTAATAGGAGCCAGGAGGAGCTCTCTCCCAGTCCACCTT
TGTTGAATCCGTCCACGCCACAGTCCACAGAGAGTCAGCCGACTACTGGTGAACCTGCCACCCC
CAAGAGGCGCAAAGCCGAGCCAGAAGCCATGCAGTCTCTGCGGCGGTCCACACGCCACAGCACC
AATTGTGACCGGCTGTCCGAGAGCAGCGCCTCGCCGCAGCCCAAGAGGCGGCAGCAGGACACAT
CCGCCAGCATGCCCAAGCTGTTCCTGCACCTGGAAAAGAAGACACCTGTTCATAGCAGATCGTC
TTCCCCCATTCCTCTGACTCCTAGTAAGGAAGGGAGTGGTGTGTTTGCTGGCTTTGAAGGTAGA
AGAACTAATGAAATAAATGAGGTCCTCTCCTGGAAGCTTGTGCCTGACAATTACCCTCCAGGTG
ACCAGCCACCTCCACCTTCTTATATTTACGGGGCACAGCATTTGCTGCGATTGTTTGTAAAACT
TCCAGAAATCCTTGGAAAGATGTCCTTTTCTGAGAAGAATCTGAAAGCTTTACTGAAGCACTTT
GATCTTTTTCTGAGGTTTTTAGCAGAATACCATGATGACTTCTTCCCAGAGTCAGCTTATGTCG
CTGCGTGTGAGGCACACTATAGCACCAAGAACCCCAGGGCAATTTATTAACGTCTGGATGGTTC
TGTGAGGACATGCCTGTTTGGCTTTGTATTCTGGATTTCAGGTGACGAACTAGTGAGACAGCAG
GCCTTCTTTTTTGTTTTTTTTTTTTTGGTCCTTTTGCGACAGGGTGAATTGCCCACTTACTGTA
GTATCTCTGTTAAGAATTGTTTCCCAGGTGCCTGAACATAGCTCAGATAAAACCCTTACTGTTA
CATAGGACATCTGTGGTGGCAGGCAAAGACAGCTGTTCATAGTGAAACGTCCGGGAGAGTGTAC
ATAAGTTAGGCTGTTTTGGAAGACATTGCAGCTAATTGTTAGTGAGAGCCACATTGTTGAGTTA
TTTGTTAGCACTAAAGAAGATATTTTTGCAGACTATTTTCATGCTTGTGGTGAGGCTGAGCGAC
TCTGCCCAACCGATTTTAGTTGGTACTTGGAAACCACGAAGTTGTCTCAGAGTCTTAGAGGAGA
TATTGATGGCCAAAGGAAATTTGCAGCTATACATTTACTTGTAACAGTTCCCTCTCTATAAAAT
GTTATTTTTGGAGATCTAAATAAAGCATTGCCTGTCTTGTTTGAGATTTTACAACTGTACTTTG
TTGAGTAATGTCATGGTTCCCTTTCTATAAAATGTTATTTTTGGTGATCTAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005411438	(Get FASTA)	NCBI Sequence Viewer
	XP_005411439	(Get FASTA)	NCBI Sequence Viewer
	XP_005411440	(Get FASTA)	NCBI Sequence Viewer
	XP_013363642	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000000080
	ENSCLAP00000000080.1
	ENSCLAP00000000081.1

RefSeq Acc Id:	XP_005411439 ⟸ XM_005411382
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2YI02 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNASEGMKFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRRRS TGRKKKRCRLPGVDTVLKSSPTAEKNENDENSISTSSDDSEEKDEEISDESDSEEKPEVKEELE LQTRKEMEERTITIDIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFS ANERPRHHHAMMHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVTSS KFFLPIKESATNTNRSQEELSPSPPLLNPSTPQSTESQPTTGEPATPKRRKAEPEAMQSLRRST RHSTNCDRLSESSASPQPKRRQQDTSASMPKLFLHLEKKTPVHSRSSSPIPLTPSKEGSGVFAG FEGRRTNEINEVLSWKLVPDNYPPGDQPPPPSYIYGAQHLLRLFVKLPEILGKMSFSEKNLKAL LKHFDLFLRFLAEYHDDFFPESAYVAACEAHYSTKNPRAIY hide sequence

RefSeq Acc Id:	XP_005411438 ⟸ XM_005411381
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2YHZ9 (UniProtKB/TrEMBL), A0A8C2YI02 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNASEGMKFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWD RWAAEDHVLRDTDENRRLQRKLARKAVARLRSTGRKKKRCRLPGVDTVLKSSPTAEKNENDENS ISTSSDDSEEKDEEISDESDSEEKPEVKEELELQTRKEMEERTITIDIPEVLKKQLEDDCYYIN RRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHAMMHANMNVHYIPAEKNVDLCKE MVDGLRITFDYTLPLVLLYPYEQAQYKKVTSSKFFLPIKESATNTNRSQEELSPSPPLLNPSTP QSTESQPTTGEPATPKRRKAEPEAMQSLRRSTRHSTNCDRLSESSASPQPKRRQQDTSASMPKL FLHLEKKTPVHSRSSSPIPLTPSKEGSGVFAGFEGRRTNEINEVLSWKLVPDNYPPGDQPPPPS YIYGAQHLLRLFVKLPEILGKMSFSEKNLKALLKHFDLFLRFLAEYHDDFFPESAYVAACEAHY STKNPRAIY hide sequence

RefSeq Acc Id:	XP_005411440 ⟸ XM_005411383
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C2YI02 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNASEGMKFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWD RWAAEDHVLRDTDENRRLQRKLARKAVARLRSTGRKKKRCRLPGVDTVLKSSPTAEKNENDENS ISTSSDDSEEKDEEISDESDSEEKPEVKEELELQTRKEMEERTITIDIPEVLKKQLEDDCYYIN RRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHAMMHANMNVHYIPAEKNVDLCKE MVDGLRITFDYTLPLVLLYPYEQAQYKKVTSSKFFLPIKESATNTNRSQEELSPSPPLLNPSTP QSTESQPTTGEPATPKRRKAEPEAMQSLRRSTRHSTNCDRLSESSASPQPKRRQQDTSASMPKL FLHLEKKTPVHSRSSSPIPLTPSKEGSGVFAGFEGRRTNEINEVLSWKLVPDNYPPGDQPPPPS YIYGAQHLLRLFGF hide sequence

RefSeq Acc Id:

XP_013363642 ⟸ XM_013508188

- Peptide Label:

isoform X4

- Sequence:

show sequence

MKMMKTKEELELQTRKEMEERTITIDIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESY
VKHFAINAAFSANERPRHHHAMMHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPY
EQAQYKKVTSSKFFLPIKESATNTNRSQEELSPSPPLLNPSTPQSTESQPTTGEPATPKRRKAE
PEAMQSLRRSTRHSTNCDRLSESSASPQPKRRQQDTSASMPKLFLHLEKKTPVHSRSSSPIPLT
PSKEGSGVFAGFEGRRTNEINEVLSWKLVPDNYPPGDQPPPPSYIYGAQHLLRLFVKLPEILGK
MSFSEKNLKALLKHFDLFLRFLAEYHDDFFPESAYVAACEAHYSTKNPRAIY

hide sequence

RefSeq Acc Id:

ENSCLAP00000000080 ⟸ ENSCLAT00000000107

RefSeq Acc Id:

ENSCLAP00000000081 ⟸ ENSCLAT00000000108

Protein Domains

Chromo MRG

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000000102	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000000107	ENTREZGENE
	ENSCLAT00000000107.1	UniProtKB/TrEMBL
	ENSCLAT00000000108.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.274.30	UniProtKB/TrEMBL
	2.30.30.140	UniProtKB/TrEMBL
InterPro	Chromo-like_dom_sf	UniProtKB/TrEMBL
	Chromo/chromo_shadow_dom	UniProtKB/TrEMBL
	MRG	UniProtKB/TrEMBL
	MRG_C_sf	UniProtKB/TrEMBL
	MRG_dom	UniProtKB/TrEMBL
	Tudor-knot	UniProtKB/TrEMBL
NCBI Gene	Msl3	ENTREZGENE
PANTHER	MRG DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	PTHR10880	UniProtKB/TrEMBL
Pfam	MRG	UniProtKB/TrEMBL
	Tudor-knot	UniProtKB/TrEMBL
PROSITE	MRG	UniProtKB/TrEMBL
SMART	CHROMO	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54160	UniProtKB/TrEMBL
UniProt	A0A8C2YHZ9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2YI02	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-05-30	Msl3	MSL complex subunit 3		male-specific lethal 3 homolog (Drosophila)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

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