Msl3 (MSL complex subunit 3) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Msl3 (MSL complex subunit 3) Rattus norvegicus
Analyze
Symbol: Msl3
Name: MSL complex subunit 3
RGD ID: 1549763
Description: Predicted to enable DNA binding activity; histone H4K16 acetyltransferase activity; and methylated histone binding activity. Predicted to be involved in positive regulation of DNA-templated transcription. Predicted to be located in nucleus. Predicted to be part of MSL complex and NuA4 histone acetyltransferase complex. Human ortholog(s) of this gene implicated in Basilicata-Akhtar syndrome. Orthologous to human MSL3 (MSL complex subunit 3); INTERACTS WITH bisphenol A; C60 fullerene; clofibric acid.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC102547271; LOC317464; male-specific lethal 3 homolog; male-specific lethal 3 homolog (Drosophila); male-specific lethal 3-like 1; male-specific lethal 3-like 1 (Drosophila); male-specific lethal-3 homolog 1; male-specific lethal-3 homolog 1 (Drosophila); Msl31; Msl3l1; similar to Male-specific lethal 3-like 1 (MSL3-like 1) (Male-specific lethal-3 homolog 1)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X29,210,388 - 29,228,060 (+)NCBIGRCr8
mRatBN7.2X25,638,029 - 25,655,698 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX25,637,804 - 25,655,697 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX26,633,073 - 26,650,631 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X30,054,150 - 30,071,708 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X26,296,795 - 26,314,394 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X27,015,826 - 27,033,562 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX27,015,884 - 27,033,555 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X27,420,494 - 27,438,244 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X46,330,790 - 46,348,467 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX26,048,467 - 26,066,050 (+)NCBICelera
Cytogenetic MapXq13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:20018852   PMID:20657587   PMID:30224647  


Genomics

Comparative Map Data
Msl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X29,210,388 - 29,228,060 (+)NCBIGRCr8
mRatBN7.2X25,638,029 - 25,655,698 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX25,637,804 - 25,655,697 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX26,633,073 - 26,650,631 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X30,054,150 - 30,071,708 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X26,296,795 - 26,314,394 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X27,015,826 - 27,033,562 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX27,015,884 - 27,033,555 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X27,420,494 - 27,438,244 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X46,330,790 - 46,348,467 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX26,048,467 - 26,066,050 (+)NCBICelera
Cytogenetic MapXq13NCBI
MSL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X11,758,159 - 11,775,772 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX11,758,159 - 11,775,772 (+)EnsemblGRCh38hg38GRCh38
GRCh37X11,776,278 - 11,793,891 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X11,686,199 - 11,703,793 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX15,904,870 - 15,922,463 (+)NCBICelera
Cytogenetic MapXp22.2NCBI
HuRefX9,555,123 - 9,572,080 (+)NCBIHuRef
CHM1_1X11,806,915 - 11,824,468 (+)NCBICHM1_1
T2T-CHM13v2.0X11,340,708 - 11,358,321 (+)NCBIT2T-CHM13v2.0
Msl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X167,434,263 - 167,456,868 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX167,437,113 - 167,456,894 (-)EnsemblGRCm39 Ensembl
GRCm38X168,651,267 - 168,674,354 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX168,654,117 - 168,673,898 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X165,092,049 - 165,111,834 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X163,998,222 - 164,018,007 (-)NCBIMGSCv36mm8
CeleraX151,820,966 - 151,840,717 (-)NCBICelera
Cytogenetic MapXF5NCBI
cM MapX78.73NCBI
Msl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555441,523,310 - 1,541,019 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555441,523,369 - 1,541,012 (-)NCBIChiLan1.0ChiLan1.0
MSL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X13,557,989 - 13,575,611 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X13,561,702 - 13,579,280 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X4,385,861 - 4,403,467 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X11,676,301 - 11,693,474 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX11,672,109 - 11,693,468 (+)Ensemblpanpan1.1panPan2
MSL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X8,294,797 - 8,311,142 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX8,294,802 - 8,310,751 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX8,251,506 - 8,267,864 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X8,247,326 - 8,263,668 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX8,247,328 - 8,265,173 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X8,231,197 - 8,247,533 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X8,267,557 - 8,283,904 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X8,263,471 - 8,279,825 (+)NCBIUU_Cfam_GSD_1.0
Msl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X1,572,031 - 1,587,002 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364701,572,014 - 1,587,011 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364701,572,037 - 1,587,002 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MSL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX8,519,370 - 8,535,249 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X8,519,366 - 8,535,249 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X9,292,676 - 9,308,561 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MSL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X10,259,700 - 10,292,097 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX10,259,711 - 10,277,817 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605612,009,518 - 12,039,348 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Msl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248822,591,308 - 2,613,049 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248822,594,453 - 2,614,076 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Msl3
70 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:171
Count of miRNA genes:119
Interacting mature miRNAs:144
Transcripts:ENSRNOT00000065814
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144812931706553Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
71116Niddm16Non-insulin dependent diabetes mellitus QTL 167.81blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X1529780260297802Rat
1598873Memor2Memory QTL 22.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)X2099094741052531Rat
2290375Gluco34Glucose level QTL 342.75blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X2099094741203591Rat

Markers in Region
RH134099  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X25,650,145 - 25,650,332 (+)MAPPERmRatBN7.2
Rnor_6.0X27,027,857 - 27,028,043NCBIRnor6.0
Rnor_5.0X27,432,539 - 27,432,725UniSTSRnor5.0
RGSC_v3.4X46,342,917 - 46,343,103UniSTSRGSC3.4
CeleraX26,060,500 - 26,060,686UniSTS
RH 3.4 MapX347.91UniSTS
Cytogenetic MapXq21UniSTS
RH136838  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X25,655,340 - 25,655,521 (+)MAPPERmRatBN7.2
Rnor_6.0X27,033,205 - 27,033,385NCBIRnor6.0
Rnor_5.0X27,437,887 - 27,438,067UniSTSRnor5.0
RGSC_v3.4X46,348,114 - 46,348,294UniSTSRGSC3.4
CeleraX26,065,697 - 26,065,877UniSTS
Cytogenetic MapXq21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 38 11 8
Low 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001014111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008773169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC086548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000065814   ⟹   ENSRNOP00000061187
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX25,637,804 - 25,655,697 (+)Ensembl
Rnor_6.0 EnsemblX27,015,884 - 27,033,555 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113748   ⟹   ENSRNOP00000090151
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX25,637,804 - 25,655,697 (+)Ensembl
RefSeq Acc Id: NM_001014111   ⟹   NP_001014133
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X29,210,464 - 29,228,057 (+)NCBI
mRatBN7.2X25,638,101 - 25,655,694 (+)NCBI
Rnor_6.0X27,015,884 - 27,033,558 (+)NCBI
Rnor_5.0X27,420,494 - 27,438,244 (+)NCBI
RGSC_v3.4X46,330,790 - 46,348,467 (+)RGD
CeleraX26,048,467 - 26,066,050 (+)RGD
Sequence:
RefSeq Acc Id: XM_006256835   ⟹   XP_006256897
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X29,210,398 - 29,228,060 (+)NCBI
mRatBN7.2X25,638,034 - 25,655,698 (+)NCBI
Rnor_6.0X27,015,826 - 27,033,562 (+)NCBI
Rnor_5.0X27,420,494 - 27,438,244 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256836   ⟹   XP_006256898
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X29,210,401 - 29,228,060 (+)NCBI
mRatBN7.2X25,638,037 - 25,655,698 (+)NCBI
Rnor_6.0X27,015,826 - 27,033,562 (+)NCBI
Rnor_5.0X27,420,494 - 27,438,244 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256839   ⟹   XP_006256901
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X29,210,398 - 29,228,060 (+)NCBI
mRatBN7.2X25,638,037 - 25,655,698 (+)NCBI
Rnor_6.0X27,015,827 - 27,033,562 (+)NCBI
Rnor_5.0X27,420,494 - 27,438,244 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008773169   ⟹   XP_008771391
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X29,210,398 - 29,228,060 (+)NCBI
mRatBN7.2X25,638,034 - 25,655,698 (+)NCBI
Rnor_6.0X27,015,826 - 27,033,562 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017602075   ⟹   XP_017457564
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X29,210,388 - 29,228,060 (+)NCBI
mRatBN7.2X25,638,056 - 25,655,698 (+)NCBI
Rnor_6.0X27,015,876 - 27,033,562 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017602077   ⟹   XP_017457566
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X29,210,393 - 29,228,060 (+)NCBI
mRatBN7.2X25,638,051 - 25,655,698 (+)NCBI
Rnor_6.0X27,015,861 - 27,033,562 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039099827   ⟹   XP_038955755
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X29,210,780 - 29,228,060 (+)NCBI
mRatBN7.2X25,638,354 - 25,655,698 (+)NCBI
RefSeq Acc Id: XM_039099828   ⟹   XP_038955756
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X29,210,780 - 29,228,060 (+)NCBI
mRatBN7.2X25,638,359 - 25,655,698 (+)NCBI
RefSeq Acc Id: XM_063280077   ⟹   XP_063136147
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X29,210,779 - 29,228,060 (+)NCBI
RefSeq Acc Id: XM_063280078   ⟹   XP_063136148
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X29,210,388 - 29,228,060 (+)NCBI
RefSeq Acc Id: XM_063280079   ⟹   XP_063136149
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X29,210,395 - 29,221,290 (+)NCBI
RefSeq Acc Id: XM_063280080   ⟹   XP_063136150
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X29,210,854 - 29,228,060 (+)NCBI
RefSeq Acc Id: XM_063280081   ⟹   XP_063136151
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X29,211,241 - 29,228,060 (+)NCBI
RefSeq Acc Id: XR_005497991
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X29,210,392 - 29,219,572 (+)NCBI
mRatBN7.2X25,638,030 - 25,647,209 (+)NCBI
RefSeq Acc Id: NP_001014133   ⟸   NM_001014111
- UniProtKB: Q5RJQ2 (UniProtKB/TrEMBL),   F7FM67 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256898   ⟸   XM_006256836
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A9H7 (UniProtKB/TrEMBL),   F7FM67 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256897   ⟸   XM_006256835
- Peptide Label: isoform X2
- UniProtKB: F7FM67 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256901   ⟸   XM_006256839
- Peptide Label: isoform X4
- UniProtKB: F7FM67 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008771391   ⟸   XM_008773169
- Peptide Label: isoform X1
- UniProtKB: F7FM67 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457566   ⟸   XM_017602077
- Peptide Label: isoform X9
- UniProtKB: F7FM67 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457564   ⟸   XM_017602075
- Peptide Label: isoform X8
- UniProtKB: F7FM67 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000061187   ⟸   ENSRNOT00000065814
RefSeq Acc Id: XP_038955755   ⟸   XM_039099827
- Peptide Label: isoform X5
- UniProtKB: F7FM67 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955756   ⟸   XM_039099828
- Peptide Label: isoform X6
- UniProtKB: F7FM67 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000090151   ⟸   ENSRNOT00000113748
RefSeq Acc Id: XP_063136148   ⟸   XM_063280078
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063136149   ⟸   XM_063280079
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063136147   ⟸   XM_063280077
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063136150   ⟸   XM_063280080
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063136151   ⟸   XM_063280081
- Peptide Label: isoform X13
Protein Domains
Chromo   MRG

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5RJQ2-F1-model_v2 AlphaFold Q5RJQ2 1-466 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701783
Promoter ID:EPDNEW_R12306
Type:initiation region
Name:Msl3_1
Description:MSL complex subunit 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X27,015,847 - 27,015,907EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1549763 AgrOrtholog
BioCyc Gene G2FUF-2671 BioCyc
Ensembl Genes ENSRNOG00000004016 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000065814.2 UniProtKB/TrEMBL
  ENSRNOT00000113748.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.274.30 UniProtKB/TrEMBL
  2.30.30.140 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7301795 IMAGE-MGC_LOAD
InterPro Chromo/chromo_shadow_dom UniProtKB/TrEMBL
  Chromodomain-like UniProtKB/TrEMBL
  MRG UniProtKB/TrEMBL
  MRG_C_sf UniProtKB/TrEMBL
  MRG_dom UniProtKB/TrEMBL
  Tudor-knot UniProtKB/TrEMBL
KEGG Report rno:317464 UniProtKB/TrEMBL
MGC_CLONE MGC:105946 IMAGE-MGC_LOAD
NCBI Gene 317464 ENTREZGENE
PANTHER MALE-SPECIFIC LETHAL 3 HOMOLOG UniProtKB/TrEMBL
  MRG UniProtKB/TrEMBL
Pfam MRG UniProtKB/TrEMBL
  Tudor-knot UniProtKB/TrEMBL
PhenoGen Msl3 PhenoGen
PROSITE MRG UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004016 RatGTEx
SMART CHROMO UniProtKB/TrEMBL
Superfamily-SCOP Chromodomain-like UniProtKB/TrEMBL
UniProt A0A8I6A9H7 ENTREZGENE, UniProtKB/TrEMBL
  F7FM67 ENTREZGENE, UniProtKB/TrEMBL
  Q5RJQ2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Msl3  MSL complex subunit 3  LOC102547271  male-specific lethal 3 homolog  Data merged from RGD:7702890 737654 PROVISIONAL
2017-06-13 Msl3  MSL complex subunit 3  Msl3  male-specific lethal 3 homolog (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-12-18 LOC102547271  male-specific lethal 3 homolog      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-04-23 Msl3  male-specific lethal 3 homolog (Drosophila)  Msl3l1  male-specific lethal 3-like 1 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-11-11 Msl3l1  male-specific lethal 3-like 1 (Drosophila)  Msl31  male-specific lethal-3 homolog 1 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Msl31  male-specific lethal-3 homolog 1 (Drosophila)  Msl3l1  male-specific lethal 3-like 1 (Drosophila)  Symbol and Name updated 1299863 APPROVED
2006-03-28 Msl3l1  male-specific lethal 3-like 1 (Drosophila)  LOC317464  similar to Male-specific lethal 3-like 1 (MSL3-like 1) (Male-specific lethal-3 homolog 1)  Symbol and Name updated 1299863 APPROVED
2005-09-15 LOC317464  similar to Male-specific lethal 3-like 1 (MSL3-like 1) (Male-specific lethal-3 homolog 1)      Symbol and Name status set to provisional 70820 PROVISIONAL