Usp22 (ubiquitin specific peptidase 22) - Rat Genome Database

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Gene: Usp22 (ubiquitin specific peptidase 22) Chinchilla lanigera
Analyze
Symbol: Usp22
Name: ubiquitin specific peptidase 22
RGD ID: 8864314
Description: ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); enzyme binding (ortholog); histone H2A deubiquitinase activity (ortholog); INVOLVED IN G2/M transition of mitotic cell cycle (ortholog); positive regulation of DNA-templated transcription (ortholog); positive regulation of mitotic cell cycle (ortholog); PARTICIPATES IN histone modification pathway; RNA polymerase II transcription initiation pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN SAGA complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquitin carboxyl-terminal hydrolase 22
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955577978,152 - 1,002,480 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955577979,317 - 1,002,478 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
SAGA complex  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Usp22
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955577978,152 - 1,002,480 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955577979,317 - 1,002,478 (-)NCBIChiLan1.0ChiLan1.0
USP22
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381720,999,596 - 21,043,419 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1720,999,596 - 21,043,760 (-)EnsemblGRCh38hg38GRCh38
GRCh371720,902,909 - 20,946,324 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361720,843,498 - 20,886,944 (-)NCBINCBI36Build 36hg18NCBI36
Build 341720,843,501 - 20,886,944NCBI
Celera1721,596,363 - 21,639,730 (+)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1720,105,104 - 20,134,191 (-)NCBIHuRef
CHM1_11720,912,612 - 20,956,003 (-)NCBICHM1_1
T2T-CHM13v2.01720,948,437 - 20,992,181 (-)NCBIT2T-CHM13v2.0
Usp22
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391161,042,607 - 61,065,885 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1161,042,611 - 61,065,881 (-)EnsemblGRCm39 Ensembl
GRCm381161,151,781 - 61,175,059 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,151,785 - 61,175,055 (-)EnsemblGRCm38mm10GRCm38
MGSCv371160,965,283 - 60,988,561 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361161,582,720 - 61,604,614 (-)NCBIMGSCv36mm8
MGSCv361160,969,222 - 60,991,116 (-)NCBIMGSCv36mm8
Cytogenetic Map11B2NCBI
cM Map1137.96NCBI
Usp22
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81046,328,092 - 46,354,939 (-)NCBIGRCr8
mRatBN7.21045,828,619 - 45,855,468 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1045,828,622 - 45,855,497 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1050,533,750 - 50,557,825 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01050,024,143 - 50,048,217 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01045,527,710 - 45,551,785 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01047,429,201 - 47,453,298 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1047,429,002 - 47,453,442 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01047,203,849 - 47,227,946 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41047,303,727 - 47,327,738 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11047,315,918 - 47,341,370 (-)NCBI
Celera1045,085,173 - 45,109,272 (-)NCBICelera
Cytogenetic Map10q22NCBI
USP22
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21950,346,675 - 50,390,168 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11755,215,283 - 55,258,620 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01730,606,845 - 30,650,281 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11735,468,177 - 35,511,672 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1735,468,177 - 35,511,672 (+)Ensemblpanpan1.1panPan2
USP22
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1542,493,776 - 42,519,740 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl542,496,472 - 42,540,378 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha542,586,089 - 42,678,063 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0542,555,402 - 42,647,432 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1542,521,953 - 42,613,962 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0542,469,373 - 42,561,372 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0542,661,849 - 42,753,883 (-)NCBIUU_Cfam_GSD_1.0
Usp22
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560262,248,926 - 62,287,018 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936741580,224 - 618,628 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936741580,230 - 618,322 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP22
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1261,271,641 - 61,308,270 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11261,273,939 - 61,308,381 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
USP22
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11619,110,710 - 19,151,565 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1619,107,508 - 19,151,603 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660591,608,381 - 1,661,766 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usp22
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248494,515,584 - 4,557,972 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248494,516,849 - 4,557,656 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000001366   ⟹   ENSCLAP00000001324
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955577978,152 - 1,002,480 (-)Ensembl
RefSeq Acc Id: XM_013509635   ⟹   XP_013365089
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955577979,317 - 1,002,478 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013365089 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000001324
  ENSCLAP00000001324.1
Reference Protein Sequences
RefSeq Acc Id: XP_013365089   ⟸   XM_013509635
- UniProtKB: A0A8C2UL39 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000001324   ⟸   ENSCLAT00000001366
Protein Domains
UBP-type   USP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001008 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000001366 ENTREZGENE
  ENSCLAT00000001366.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
  Cysteine proteinases UniProtKB/TrEMBL
InterPro Papain-like_cys_pep_sf UniProtKB/TrEMBL
  Peptidase_C19_UCH UniProtKB/TrEMBL
  USP_CS UniProtKB/TrEMBL
  USP_dom UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_UBP UniProtKB/TrEMBL
NCBI Gene Usp22 ENTREZGENE
PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/TrEMBL
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 22 UniProtKB/TrEMBL
Pfam UCH UniProtKB/TrEMBL
  zf-UBP UniProtKB/TrEMBL
PROSITE USP_1 UniProtKB/TrEMBL
  USP_2 UniProtKB/TrEMBL
  USP_3 UniProtKB/TrEMBL
  ZF_UBP UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
  SSF54001 UniProtKB/TrEMBL
UniProt A0A8C2UL39 ENTREZGENE, UniProtKB/TrEMBL