Cast (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955418 | 15,862,729 - 15,916,169 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955418 | 15,859,951 - 15,974,141 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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CAST (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 5 | 95,961,429 - 96,774,683 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 5 | 96,525,267 - 96,779,595 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh38.p14 Ensembl | 5 | 96,050,115 - 96,215,519 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 5 | 95,997,741 - 96,110,387 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 5 | 96,023,697 - 96,136,143 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 5 | 96,089,768 - 96,134,279 | NCBI | | | | | Celera | 5 | 91,882,129 - 91,994,809 (+) | NCBI | | Celera | | | Cytogenetic Map | 5 | q15 | NCBI | | | | | HuRef | 5 | 91,188,220 - 91,300,638 (+) | NCBI | | HuRef | | | CHM1_1 | 5 | 95,430,442 - 95,543,106 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 5 | 96,462,750 - 97,275,514 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Cast (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 13 | 74,840,485 - 74,956,993 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 13 | 74,840,487 - 74,956,929 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 13 | 74,692,366 - 74,808,874 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 13 | 74,692,368 - 74,808,810 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 13 | 74,831,734 - 74,945,369 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 13 | 75,160,288 - 75,273,923 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 13 | 77,024,381 - 77,127,605 (-) | NCBI | | Celera | | | Cytogenetic Map | 13 | C1 | NCBI | | | | | cM Map | 13 | 40.52 | NCBI | | | | |
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Cast (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 2 | 5,707,633 - 5,817,213 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 2 | 3,973,112 - 4,082,658 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 2 | 3,973,112 - 4,082,659 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 2 | 11,082,164 - 11,184,562 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 2 | 9,181,388 - 9,283,785 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 2 | 3,818,359 - 3,927,706 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 2 | 1,452,111 - 1,561,669 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 2 | 1,452,116 - 1,561,464 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 2 | 1,422,022 - 1,530,917 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 2 | 1,495,048 - 1,608,477 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 2 | 1,497,323 - 1,558,604 (-) | NCBI | | | | | Celera | 2 | 468,414 - 578,127 (-) | NCBI | | Celera | | | Cytogenetic Map | 2 | q11 | NCBI | | | | |
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CAST (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 4 | 91,910,381 - 92,022,791 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 5 | 90,064,235 - 90,174,585 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 5 | 91,972,572 - 92,084,657 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 5 | 97,526,828 - 97,639,645 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 5 | 97,527,071 - 97,636,650 (+) | Ensembl | panpan1.1 | | panPan2 | |
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CAST (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 3 | 12,920,514 - 13,031,974 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 3 | 12,922,453 - 13,031,959 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 3 | 14,260,972 - 14,372,507 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 3 | 12,802,911 - 12,914,616 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 3 | 12,803,481 - 12,914,611 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 3 | 12,764,153 - 12,875,875 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 3 | 12,760,328 - 12,871,469 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 3 | 12,958,745 - 13,070,416 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Cast (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024407213 | 168,504,231 - 168,612,822 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936523 | 6,686,519 - 6,798,321 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936523 | 6,688,153 - 6,798,184 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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CAST (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 2 | 103,255,750 - 103,378,623 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 2 | 103,255,738 - 103,378,623 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 2 | 106,934,106 - 107,044,360 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | | Sscrofa10.2 | 2 | 107,095,361 - 107,128,389 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | | Pig Cytomap | 2 | q2.1-q2.4 | NCBI | | | | |
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CAST (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 4 | 90,496,867 - 90,607,019 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 4 | 90,497,754 - 90,605,481 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666049 | 39,150,544 - 39,263,306 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Cast (Heterocephalus glaber - naked mole-rat) |
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