Cast (calpastatin) - Rat Genome Database

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Gene: Cast (calpastatin) Chinchilla lanigera
Analyze
Symbol: Cast
Name: calpastatin
RGD ID: 8858621
Description: ENCODES a protein that exhibits calcium-dependent cysteine-type endopeptidase inhibitor activity (ortholog); protease binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); egg activation (ortholog); liver development (ortholog); PARTICIPATES IN the proteolytic pathway involving calcium-dependent proteases; ASSOCIATED WITH Acute Liver Failure (ortholog); acute lymphoblastic leukemia (ortholog); alcohol use disorder (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541815,862,729 - 15,916,169 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541815,859,951 - 15,974,141 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cast
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541815,862,729 - 15,916,169 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541815,859,951 - 15,974,141 (-)NCBIChiLan1.0ChiLan1.0
CAST
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38595,961,429 - 96,774,683 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl596,525,267 - 96,779,595 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl596,050,115 - 96,215,519 (+)EnsemblGRCh38hg38GRCh38
GRCh37595,997,741 - 96,110,387 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36596,023,697 - 96,136,143 (+)NCBINCBI36Build 36hg18NCBI36
Build 34596,089,768 - 96,134,279NCBI
Celera591,882,129 - 91,994,809 (+)NCBICelera
Cytogenetic Map5q15NCBI
HuRef591,188,220 - 91,300,638 (+)NCBIHuRef
CHM1_1595,430,442 - 95,543,106 (+)NCBICHM1_1
T2T-CHM13v2.0596,462,750 - 97,275,514 (+)NCBIT2T-CHM13v2.0
Cast
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391374,840,485 - 74,956,993 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1374,840,487 - 74,956,929 (-)EnsemblGRCm39 Ensembl
GRCm381374,692,366 - 74,808,874 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1374,692,368 - 74,808,810 (-)EnsemblGRCm38mm10GRCm38
MGSCv371374,831,734 - 74,945,369 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361375,160,288 - 75,273,923 (-)NCBIMGSCv36mm8
Celera1377,024,381 - 77,127,605 (-)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.52NCBI
Cast
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr825,707,633 - 5,817,213 (-)NCBIGRCr8
mRatBN7.223,973,112 - 4,082,658 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl23,973,112 - 4,082,659 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx211,082,164 - 11,184,562 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.029,181,388 - 9,283,785 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.023,818,359 - 3,927,706 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.021,452,111 - 1,561,669 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl21,452,116 - 1,561,464 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.021,422,022 - 1,530,917 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.421,495,048 - 1,608,477 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.121,497,323 - 1,558,604 (-)NCBI
Celera2468,414 - 578,127 (-)NCBICelera
Cytogenetic Map2q11NCBI
CAST
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2491,910,381 - 92,022,791 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1590,064,235 - 90,174,585 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0591,972,572 - 92,084,657 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1597,526,828 - 97,639,645 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl597,527,071 - 97,636,650 (+)Ensemblpanpan1.1panPan2
CAST
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1312,920,514 - 13,031,974 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl312,922,453 - 13,031,959 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha314,260,972 - 14,372,507 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0312,802,911 - 12,914,616 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl312,803,481 - 12,914,611 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1312,764,153 - 12,875,875 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0312,760,328 - 12,871,469 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0312,958,745 - 13,070,416 (-)NCBIUU_Cfam_GSD_1.0
Cast
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213168,504,231 - 168,612,822 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365236,686,519 - 6,798,321 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365236,688,153 - 6,798,184 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAST
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2103,255,750 - 103,378,623 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12103,255,738 - 103,378,623 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22106,934,106 - 107,044,360 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.22107,095,361 - 107,128,389 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap2q2.1-q2.4NCBI
CAST
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1490,496,867 - 90,607,019 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl490,497,754 - 90,605,481 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604939,150,544 - 39,263,306 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cast
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474315,346,837 - 15,403,150 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474315,265,930 - 15,405,904 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000010476   ⟹   ENSCLAP00000010346
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541815,862,729 - 15,916,169 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000010477   ⟹   ENSCLAP00000010347
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541815,862,729 - 15,916,169 (-)Ensembl
RefSeq Acc Id: XM_013512987   ⟹   XP_013368441
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541815,859,951 - 15,974,141 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013368441 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000010346
  ENSCLAP00000010346.1
  ENSCLAP00000010347.1
RefSeq Acc Id: XP_013368441   ⟸   XM_013512987
- UniProtKB: A0A8C2V5K5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000010346   ⟸   ENSCLAT00000010476
RefSeq Acc Id: ENSCLAP00000010347   ⟸   ENSCLAT00000010477


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007150 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000010476 ENTREZGENE
  ENSCLAT00000010476.1 UniProtKB/TrEMBL
  ENSCLAT00000010477.1 UniProtKB/TrEMBL
InterPro Calpastatin UniProtKB/TrEMBL
  Prot_inh_calpain UniProtKB/TrEMBL
NCBI Gene Cast ENTREZGENE
PANTHER CALPASTATIN UniProtKB/TrEMBL
  PTHR10077 UniProtKB/TrEMBL
Pfam Calpain_inhib UniProtKB/TrEMBL
UniProt A0A8C2V5K5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VBK5_CHILA UniProtKB/TrEMBL