Fahd2a (fumarylacetoacetate hydrolase domain containing 2A)

Gene: Fahd2a (fumarylacetoacetate hydrolase domain containing 2A) Chinchilla lanigera

Analyze

Symbol:

Fahd2a

Name:

fumarylacetoacetate hydrolase domain containing 2A

RGD ID:

8838973

Description:

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

fumarylacetoacetate hydrolase domain-containing protein 2A

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955470	3,624,462 - 3,632,949 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955470	3,624,462 - 3,632,949 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Fahd2a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955470	3,624,462 - 3,632,949 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955470	3,624,462 - 3,632,949 (+)	NCBI	ChiLan1.0	ChiLan1.0

FAHD2A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	95,402,708 - 95,421,656 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	95,402,708 - 95,416,616 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	96,068,456 - 96,082,364 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	95,432,175 - 95,442,606 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	95,490,321 - 95,500,753	NCBI
Celera	2	90,421,569 - 90,432,000 (+)	NCBI		Celera
Cytogenetic Map	2	q11.1	NCBI
HuRef	2	90,095,394 - 90,105,821 (+)	NCBI		HuRef
CHM1_1	2	96,072,763 - 96,083,194 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	95,909,154 - 95,928,138 (+)	NCBI		T2T-CHM13v2.0

Fahd2a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	127,278,135 - 127,286,491 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	127,278,135 - 127,286,485 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	127,436,215 - 127,444,571 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	127,436,215 - 127,444,565 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	127,261,951 - 127,270,301 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	127,127,656 - 127,135,946 (-)	NCBI		MGSCv36	mm8
Celera	2	128,678,251 - 128,686,589 (-)	NCBI		Celera
Cytogenetic Map	2	F1	NCBI
cM Map	2	62.01	NCBI

FAHD2A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	32,877,620 - 32,890,484 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	32,879,283 - 32,893,235 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	103,989,665 - 104,001,885 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	96,317,574 - 96,321,008 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

Fahd2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	82,923,012 - 82,930,693 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936744	175,882 - 183,675 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936744	175,948 - 183,631 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC100522130
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	3	45,857,494 - 45,888,353 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	48,458,590 - 48,487,135 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103241057
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	437,719 - 446,738 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	437,662 - 446,552 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023667445	552 - 1,309 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

LOC101700516
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624749	2,138,410 - 2,152,673 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624749	2,138,188 - 2,152,673 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005400647	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005400648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005400649	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01052705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCQ01011494	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000009835 ⟹ ENSCLAP00000009706

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955470	3,624,462 - 3,632,949 (+)	Ensembl

RefSeq Acc Id:

XM_005400647 ⟹ XP_005400704

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955470	3,624,847 - 3,632,949 (+)	NCBI

Sequence:

show sequence

CTTGTGCCTTTTCCACCTGCCGTCGCGGCGCTCTCGCTGAAGGACACTTTTGCAGAGCTGGGTT
GAGCTCGGGGTGTGGGGAGTAAAGGTGACCGCGGCAGCGCCGCTTTACCTCCTTAAGCCTTGGT
GCCAGCTTCCATACAAGGAAAAACCCTAAGGGGTCAGTTGTAAGAGTGGAATGAAACTGCAGGG
GCTGATGCTGGTCTCTGGTAGGAGGAGGTTGCTCACGGCTCTGCTACAGGCTCAGAAGCAGCCT
TTTCAACCCCGAAGAGACATGAGACTGGTGCAGTTCCAGGCACCACACCTGGCAGGGCCTCACC
TGGGGCTGGAGTTGGGGAGTGGTGGTGGCATCGTCGACCTCAATGCCTTTGACCCCACACTCCC
CACAACAATGACACAGTTCCTGGAGCAGGGAGAGGCCACCCTCTCAGTGGCAAGAAGGGCTCTA
GCCGCCCAGCTGCCACTCCTCCCACGGTCGGAGGTGACCCTCCTGGCCCCAGTCACACGGCCAG
ACAAGGTGGTGTGTGTGGGCATGAACTACGCGGACCACTGCAAAGAACAGAACGTGCCTGTGCC
CAAGGAGCCCATCATCTTCAGCAAGTTTGCCAGCTCCATCGTGGGGCCCTACGATGAGATCCTC
CTGCCACCCGAGAGTCAGGAGGTGGACTGGGAGGTGGAGCTGGCCGTGGTCATTGGGAAGAAAG
GCAAGCACATCCAGGCCACAGATGCCATGGCTCACGTGGCAGGCTTCACCGTGGCTCATGATGT
GAGTGCTCGGGACTGGCAAGTAAGGCGCAATGGGAAGCAGTGGCTGTTGGGAAAAACCTTTGAC
ACCTTCTGCCCCCTGGGCCCTGCTTTGGTTACCAAGGACAGTGTAGCAGATCCACACAACCTGA
ACATCTGCTGCCGAGTGAACGGCGAGGTGGTACAGAGCAGCAACACCAGCCAGATGGTGTTTAA
GACAGAGCAGCTCATAGCCTGGGTCTCCCAGTTTGTCACTCTTTACCCAGGGGATATCTTCCTG
ACTGGGACACCCCCAGGTGTTGGGATGTTCAGGAAGCCACCCGTCTTCCTCAAGAAGGGGGACG
AGGTCCAGTGTGAGATTGAAGAACTTGGGGTCCTCGTCAACAAGGTGGCGTGACGGCTCCCTCC
CAAGCCCAGAGTGGGACAGGACGGCCACCTGCTGCCAGCGGGTCCAGTGCCCGCCCCCCCACCC
CCAGGATGCTGCTGCTTGTGAGGAGGGCAGAAGGTGGAAGCCTCAACAATAAAAGGCAAAGCAA
CAGCCTGGCTTCTGA

hide sequence

RefSeq Acc Id:

XM_005400648 ⟹ XP_005400705

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955470	3,624,462 - 3,632,949 (+)	NCBI

Sequence:

show sequence

TGACGCCATAGGGTGCGCCGCTCGCCTGGCGTTTTCGGTAGAGGTGTCGCGCCGGGACTCTGCG
AGTGAGGTCGTCGGGCTGGCGGGGCTCCCGGCGGCCACCGTCCCTGGCCTCCAGCGCCGCGGGC
TCAAACCCCACAGCGAAGGGTGCCGGGCAGGACCGGCCGTCGCGGCCAGGGGCTGATGCTGGTC
TCTGGTAGGAGGAGGTTGCTCACGGCTCTGCTACAGGCTCAGAAGCAGCCTTTTCAACCCCGAA
GAGACATGAGACTGGTGCAGTTCCAGGCACCACACCTGGCAGGGCCTCACCTGGGGCTGGAGTT
GGGGAGTGGTGGTGGCATCGTCGACCTCAATGCCTTTGACCCCACACTCCCCACAACAATGACA
CAGTTCCTGGAGCAGGGAGAGGCCACCCTCTCAGTGGCAAGAAGGGCTCTAGCCGCCCAGCTGC
CACTCCTCCCACGGTCGGAGGTGACCCTCCTGGCCCCAGTCACACGGCCAGACAAGGTGGTGTG
TGTGGGCATGAACTACGCGGACCACTGCAAAGAACAGAACGTGCCTGTGCCCAAGGAGCCCATC
ATCTTCAGCAAGTTTGCCAGCTCCATCGTGGGGCCCTACGATGAGATCCTCCTGCCACCCGAGA
GTCAGGAGGTGGACTGGGAGGTGGAGCTGGCCGTGGTCATTGGGAAGAAAGGCAAGCACATCCA
GGCCACAGATGCCATGGCTCACGTGGCAGGCTTCACCGTGGCTCATGATGTGAGTGCTCGGGAC
TGGCAAGTAAGGCGCAATGGGAAGCAGTGGCTGTTGGGAAAAACCTTTGACACCTTCTGCCCCC
TGGGCCCTGCTTTGGTTACCAAGGACAGTGTAGCAGATCCACACAACCTGAACATCTGCTGCCG
AGTGAACGGCGAGGTGGTACAGAGCAGCAACACCAGCCAGATGGTGTTTAAGACAGAGCAGCTC
ATAGCCTGGGTCTCCCAGTTTGTCACTCTTTACCCAGGGGATATCTTCCTGACTGGGACACCCC
CAGGTGTTGGGATGTTCAGGAAGCCACCCGTCTTCCTCAAGAAGGGGGACGAGGTCCAGTGTGA
GATTGAAGAACTTGGGGTCCTCGTCAACAAGGTGGCGTGACGGCTCCCTCCCAAGCCCAGAGTG
GGACAGGACGGCCACCTGCTGCCAGCGGGTCCAGTGCCCGCCCCCCCACCCCCAGGATGCTGCT
GCTTGTGAGGAGGGCAGAAGGTGGAAGCCTCAACAATAAAAGGCAAAGCAACAGCCTGGCTTCT
GA

hide sequence

RefSeq Acc Id:

XM_005400649 ⟹ XP_005400706

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955470	3,624,462 - 3,632,949 (+)	NCBI

Sequence:

show sequence

TGACGCCATAGGGTGCGCCGCTCGCCTGGCGTTTTCGGTAGAGGTGTCGCGCCGGGACTCTGCG
AGTGAGGTCGTCGGGCTGGCGGGGCTCCCGGCGGCCACCGTCCCTGGCCTCCAGCGCCGCGGGC
TCAAACCCCACAGCGAAGGGTGCCGGGCAGGACCGGCCGTCGCGGCCAGTCGCCGGGGCGTCCA
CTGACTGCGCCGAGTGGAGCTGGACCTGTGAAAACGGAAGGGCCGACTTCGCTCCCGAGCGAGC
GCACGGCGGGACAGTCCCAGGGGCTGATGCTGGTCTCTGGTAGGAGGAGGTTGCTCACGGCTCT
GCTACAGGCTCAGAAGCAGCCTTTTCAACCCCGAAGAGACATGAGACTGGTGCAGTTCCAGGCA
CCACACCTGGCAGGGCCTCACCTGGGGCTGGAGTTGGGGAGTGGTGGTGGCATCGTCGACCTCA
ATGCCTTTGACCCCACACTCCCCACAACAATGACACAGTTCCTGGAGCAGGGAGAGGCCACCCT
CTCAGTGGCAAGAAGGGCTCTAGCCGCCCAGCTGCCACTCCTCCCACGGTCGGAGGTGACCCTC
CTGGCCCCAGTCACACGGCCAGACAAGGTGGTGTGTGTGGGCATGAACTACGCGGACCACTGCA
AAGAACAGAACGTGCCTGTGCCCAAGGAGCCCATCATCTTCAGCAAGTTTGCCAGCTCCATCGT
GGGGCCCTACGATGAGATCCTCCTGCCACCCGAGAGTCAGGAGGTGGACTGGGAGGTGGAGCTG
GCCGTGGTCATTGGGAAGAAAGGCAAGCACATCCAGGCCACAGATGCCATGGCTCACGTGGCAG
GCTTCACCGTGGCTCATGATGTGAGTGCTCGGGACTGGCAAGTAAGGCGCAATGGGAAGCAGTG
GCTGTTGGGAAAAACCTTTGACACCTTCTGCCCCCTGGGCCCTGCTTTGGTTACCAAGGACAGT
GTAGCAGATCCACACAACCTGAACATCTGCTGCCGAGTGAACGGCGAGGTGGTACAGAGCAGCA
ACACCAGCCAGATGGTGTTTAAGACAGAGCAGCTCATAGCCTGGGTCTCCCAGTTTGTCACTCT
TTACCCAGGGGATATCTTCCTGACTGGGACACCCCCAGGTGTTGGGATGTTCAGGAAGCCACCC
GTCTTCCTCAAGAAGGGGGACGAGGTCCAGTGTGAGATTGAAGAACTTGGGGTCCTCGTCAACA
AGGTGGCGTGACGGCTCCCTCCCAAGCCCAGAGTGGGACAGGACGGCCACCTGCTGCCAGCGGG
TCCAGTGCCCGCCCCCCCACCCCCAGGATGCTGCTGCTTGTGAGGAGGGCAGAAGGTGGAAGCC
TCAACAATAAAAGGCAAAGCAACAGCCTGGCTTCTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005400704	(Get FASTA)	NCBI Sequence Viewer
	XP_005400705	(Get FASTA)	NCBI Sequence Viewer
	XP_005400706	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000009706
	ENSCLAP00000009706.1

RefSeq Acc Id:	XP_005400706 ⟸ XM_005400649
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2V3I2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLVSGRRRLLTALLQAQKQPFQPRRDMRLVQFQAPHLAGPHLGLELGSGGGIVDLNAFDPTLPT TMTQFLEQGEATLSVARRALAAQLPLLPRSEVTLLAPVTRPDKVVCVGMNYADHCKEQNVPVPK EPIIFSKFASSIVGPYDEILLPPESQEVDWEVELAVVIGKKGKHIQATDAMAHVAGFTVAHDVS ARDWQVRRNGKQWLLGKTFDTFCPLGPALVTKDSVADPHNLNICCRVNGEVVQSSNTSQMVFKT EQLIAWVSQFVTLYPGDIFLTGTPPGVGMFRKPPVFLKKGDEVQCEIEELGVLVNKVA hide sequence

RefSeq Acc Id:	XP_005400705 ⟸ XM_005400648
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2V3I2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLVSGRRRLLTALLQAQKQPFQPRRDMRLVQFQAPHLAGPHLGLELGSGGGIVDLNAFDPTLPT TMTQFLEQGEATLSVARRALAAQLPLLPRSEVTLLAPVTRPDKVVCVGMNYADHCKEQNVPVPK EPIIFSKFASSIVGPYDEILLPPESQEVDWEVELAVVIGKKGKHIQATDAMAHVAGFTVAHDVS ARDWQVRRNGKQWLLGKTFDTFCPLGPALVTKDSVADPHNLNICCRVNGEVVQSSNTSQMVFKT EQLIAWVSQFVTLYPGDIFLTGTPPGVGMFRKPPVFLKKGDEVQCEIEELGVLVNKVA hide sequence

RefSeq Acc Id:

XP_005400704 ⟸ XM_005400647

- Peptide Label:

isoform X1

- Sequence:

show sequence

MKLQGLMLVSGRRRLLTALLQAQKQPFQPRRDMRLVQFQAPHLAGPHLGLELGSGGGIVDLNAF
DPTLPTTMTQFLEQGEATLSVARRALAAQLPLLPRSEVTLLAPVTRPDKVVCVGMNYADHCKEQ
NVPVPKEPIIFSKFASSIVGPYDEILLPPESQEVDWEVELAVVIGKKGKHIQATDAMAHVAGFT
VAHDVSARDWQVRRNGKQWLLGKTFDTFCPLGPALVTKDSVADPHNLNICCRVNGEVVQSSNTS
QMVFKTEQLIAWVSQFVTLYPGDIFLTGTPPGVGMFRKPPVFLKKGDEVQCEIEELGVLVNKVA

hide sequence

RefSeq Acc Id:

ENSCLAP00000009706 ⟸ ENSCLAT00000009835

Protein Domains

Fumarylacetoacetase-like C-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000006729	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000009835	ENTREZGENE
	ENSCLAT00000009835.1	UniProtKB/TrEMBL
Gene3D-CATH	3.90.850.10	UniProtKB/TrEMBL
InterPro	Fumarylacetoacetase-like_C	UniProtKB/TrEMBL
	Fumarylacetoacetase_C_sf	UniProtKB/TrEMBL
NCBI Gene	Fahd2a	ENTREZGENE
PANTHER	FUMARYLACETOACETATE HYDROLASE DOMAIN-CONTAINING PROTEIN 2A	UniProtKB/TrEMBL
	FUMARYLACETOACETATE HYDROLASE DOMAIN-CONTAINING PROTEIN 2A-RELATED	UniProtKB/TrEMBL
Pfam	FAA_hydrolase	UniProtKB/TrEMBL
Superfamily-SCOP	SSF56529	UniProtKB/TrEMBL
UniProt	A0A8C2V3I2	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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