Stx16 (syntaxin 16) - Rat Genome Database

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Gene: Stx16 (syntaxin 16) Chinchilla lanigera
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Symbol: Stx16
Name: syntaxin 16
RGD ID: 8827599
Description: ENCODES a protein that exhibits SNAP receptor activity (ortholog); syntaxin binding (ortholog); INVOLVED IN endocytic recycling (ortholog); retrograde transport, endosome to Golgi (ortholog); ASSOCIATED WITH autosomal dominant pseudohypoaldosteronism type 1 (ortholog); genetic disease (ortholog); pseudohypoaldosteronism (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: syntaxin-16
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955445887,240 - 909,151 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955445884,372 - 910,010 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Stx16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955445887,240 - 909,151 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955445884,372 - 910,010 (-)NCBIChiLan1.0ChiLan1.0
STX16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382058,651,283 - 58,679,526 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2058,651,272 - 58,679,526 (+)EnsemblGRCh38hg38GRCh38
GRCh372057,226,339 - 57,254,582 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362056,659,734 - 56,687,988 (+)NCBINCBI36Build 36hg18NCBI36
Build 342056,659,733 - 56,687,986NCBI
Celera2053,966,805 - 53,995,061 (+)NCBICelera
Cytogenetic Map20q13.32NCBI
HuRef2054,010,737 - 54,039,011 (+)NCBIHuRef
CHM1_12057,127,816 - 57,156,091 (+)NCBICHM1_1
T2T-CHM13v2.02060,433,347 - 60,461,590 (+)NCBIT2T-CHM13v2.0
Stx16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392173,918,052 - 173,941,564 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2173,918,101 - 173,941,564 (+)EnsemblGRCm39 Ensembl
GRCm382174,076,260 - 174,099,771 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2174,076,308 - 174,099,771 (+)EnsemblGRCm38mm10GRCm38
MGSCv372173,902,552 - 173,925,272 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362173,719,260 - 173,741,346 (+)NCBIMGSCv36mm8
Celera2180,041,568 - 180,064,364 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map297.85NCBI
Stx16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83183,271,417 - 183,300,746 (+)NCBIGRCr8
mRatBN7.23162,853,764 - 162,882,489 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3162,853,782 - 162,882,489 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3166,652,863 - 166,681,542 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03175,151,075 - 175,179,478 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03172,893,705 - 172,922,383 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03172,154,739 - 172,183,699 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3172,154,754 - 172,183,732 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03178,206,507 - 178,235,429 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43164,995,189 - 165,022,884 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13164,901,023 - 164,937,604 (+)NCBI
Celera3162,030,293 - 162,057,164 (+)NCBICelera
Cytogenetic Map3q43NCBI
STX16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22164,411,173 - 64,439,556 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12064,404,358 - 64,432,676 (+)NCBINHGRI_mPanPan1
STX16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12443,425,719 - 43,451,828 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2443,426,470 - 43,449,077 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2442,672,827 - 42,698,669 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02444,292,332 - 44,318,176 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2444,292,533 - 44,318,126 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12443,396,684 - 43,422,524 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02443,514,744 - 43,540,577 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02444,174,745 - 44,200,586 (+)NCBIUU_Cfam_GSD_1.0
STX16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1758,840,006 - 58,873,241 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11758,839,982 - 58,873,396 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21766,106,367 - 66,135,008 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STX16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.125,462,910 - 5,489,416 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl25,460,383 - 5,488,693 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605053,513,523 - 53,542,430 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stx16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474124,952,793 - 24,974,554 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474124,951,985 - 24,980,049 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000012985   ⟹   ENSCLAP00000012837
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955445887,240 - 909,151 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000012986   ⟹   ENSCLAP00000012838
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955445887,240 - 909,151 (-)Ensembl
RefSeq Acc Id: XM_005392230   ⟹   XP_005392287
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955445887,360 - 910,001 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005392231   ⟹   XP_005392288
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955445887,359 - 910,002 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005392232   ⟹   XP_005392289
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955445887,360 - 909,996 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005392233   ⟹   XP_005392290
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955445884,372 - 909,972 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005392234   ⟹   XP_005392291
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955445887,360 - 909,997 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005392235   ⟹   XP_005392292
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955445884,372 - 909,974 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005392236   ⟹   XP_005392293
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955445884,372 - 909,969 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005392238   ⟹   XP_005392295
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955445884,372 - 909,970 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005392240   ⟹   XP_005392297
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955445887,357 - 910,007 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005392241   ⟹   XP_005392298
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955445887,357 - 910,006 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518248   ⟹   XP_013373702
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955445887,357 - 910,010 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005392290   ⟸   XM_005392233
- Peptide Label: isoform X4
- UniProtKB: A0A8C2VAV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005392292   ⟸   XM_005392235
- Peptide Label: isoform X6
- UniProtKB: A0A8C2VAV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005392293   ⟸   XM_005392236
- Peptide Label: isoform X7
- UniProtKB: A0A8C2VAV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005392295   ⟸   XM_005392238
- Peptide Label: isoform X9
- UniProtKB: A0A8C2VAV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005392297   ⟸   XM_005392240
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_005392298   ⟸   XM_005392241
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_005392288   ⟸   XM_005392231
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VAV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005392287   ⟸   XM_005392230
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VAV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005392289   ⟸   XM_005392232
- Peptide Label: isoform X3
- UniProtKB: A0A8C2VAV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005392291   ⟸   XM_005392234
- Peptide Label: isoform X5
- UniProtKB: A0A8C2VAV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373702   ⟸   XM_013518248
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: ENSCLAP00000012837   ⟸   ENSCLAT00000012985
RefSeq Acc Id: ENSCLAP00000012838   ⟸   ENSCLAT00000012986

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008863 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000012985 ENTREZGENE
  ENSCLAT00000012985.1 UniProtKB/TrEMBL
  ENSCLAT00000012986 ENTREZGENE
  ENSCLAT00000012986.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.70 UniProtKB/TrEMBL
InterPro SNARE UniProtKB/TrEMBL
  Syntaxin UniProtKB/TrEMBL
  Syntaxin/epimorphin_CS UniProtKB/TrEMBL
  T_SNARE_dom UniProtKB/TrEMBL
NCBI Gene Stx16 ENTREZGENE
PANTHER PTHR19957 UniProtKB/TrEMBL
  PTHR19957:SF83 UniProtKB/TrEMBL
Pfam SNARE UniProtKB/TrEMBL
PROSITE SYNTAXIN UniProtKB/TrEMBL
  T_SNARE UniProtKB/TrEMBL
SMART t_SNARE UniProtKB/TrEMBL
Superfamily-SCOP SSF47661 UniProtKB/TrEMBL
UniProt A0A8C2VAV9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VG38_CHILA UniProtKB/TrEMBL