Stx16 (syntaxin 16) - Rat Genome Database

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Gene: Stx16 (syntaxin 16) Mus musculus
Analyze
Symbol: Stx16
Name: syntaxin 16
RGD ID: 1553214
MGI Page MGI
Description: Predicted to enable SNAP receptor activity and syntaxin binding activity. Predicted to be involved in several processes, including endosomal transport; vesicle docking; and vesicle fusion. Predicted to act upstream of or within protein transport. Located in Golgi apparatus. Is expressed in several structures, including central nervous system; connective tissue; genitourinary system; gut; and immune system. Human ortholog(s) of this gene implicated in pseudohypoparathyroidism type IB. Orthologous to human STX16 (syntaxin 16).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4930401D03; 5430410K23Rik; 6330500A18Rik; AI648908; AW553605; SYN; Syn16; syntaxin-16
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392173,918,052 - 173,941,564 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2173,918,101 - 173,941,564 (+)EnsemblGRCm39 Ensembl
GRCm382174,076,260 - 174,099,771 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2174,076,308 - 174,099,771 (+)EnsemblGRCm38mm10GRCm38
MGSCv372173,902,552 - 173,925,272 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362173,719,260 - 173,741,346 (+)NCBIMGSCv36mm8
Celera2180,041,568 - 180,064,364 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map297.85NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12857877   PMID:14610273   PMID:15747579   PMID:16141072   PMID:16141073  
PMID:17114649   PMID:17317779   PMID:17852734   PMID:18321981   PMID:18337752   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22421546   PMID:24194600   PMID:26629404   PMID:27626380  
PMID:28700664   PMID:37848288  


Genomics

Comparative Map Data
Stx16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392173,918,052 - 173,941,564 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2173,918,101 - 173,941,564 (+)EnsemblGRCm39 Ensembl
GRCm382174,076,260 - 174,099,771 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2174,076,308 - 174,099,771 (+)EnsemblGRCm38mm10GRCm38
MGSCv372173,902,552 - 173,925,272 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362173,719,260 - 173,741,346 (+)NCBIMGSCv36mm8
Celera2180,041,568 - 180,064,364 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map297.85NCBI
STX16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382058,651,283 - 58,679,526 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2058,651,272 - 58,679,526 (+)EnsemblGRCh38hg38GRCh38
GRCh372057,226,339 - 57,254,582 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362056,659,734 - 56,687,988 (+)NCBINCBI36Build 36hg18NCBI36
Build 342056,659,733 - 56,687,986NCBI
Celera2053,966,805 - 53,995,061 (+)NCBICelera
Cytogenetic Map20q13.32NCBI
HuRef2054,010,737 - 54,039,011 (+)NCBIHuRef
CHM1_12057,127,816 - 57,156,091 (+)NCBICHM1_1
T2T-CHM13v2.02060,433,347 - 60,461,590 (+)NCBIT2T-CHM13v2.0
Stx16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83183,271,417 - 183,300,746 (+)NCBIGRCr8
mRatBN7.23162,853,764 - 162,882,489 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3162,853,782 - 162,882,489 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3166,652,863 - 166,681,542 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03175,151,075 - 175,179,478 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03172,893,705 - 172,922,383 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03172,154,739 - 172,183,699 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3172,154,754 - 172,183,732 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03178,206,507 - 178,235,429 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43164,995,189 - 165,022,884 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13164,901,023 - 164,937,604 (+)NCBI
Celera3162,030,293 - 162,057,164 (+)NCBICelera
Cytogenetic Map3q43NCBI
Stx16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955445887,240 - 909,151 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955445884,372 - 910,010 (-)NCBIChiLan1.0ChiLan1.0
NPEPL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22164,451,184 - 64,477,251 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12064,444,304 - 64,470,363 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02055,037,301 - 55,065,461 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12056,309,440 - 56,337,709 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2056,271,484 - 56,299,929 (+)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl2056,309,440 - 56,338,179 (+)Ensemblpanpan1.1panPan2
STX16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12443,425,719 - 43,451,828 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2443,426,470 - 43,449,077 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2442,672,827 - 42,698,669 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02444,292,332 - 44,318,176 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2444,292,533 - 44,318,126 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12443,396,684 - 43,422,524 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02443,514,744 - 43,540,577 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02444,174,745 - 44,200,586 (+)NCBIUU_Cfam_GSD_1.0
STX16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1758,840,006 - 58,873,241 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11758,839,982 - 58,873,396 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21766,106,367 - 66,135,008 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STX16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.125,462,910 - 5,489,416 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl25,460,383 - 5,488,693 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605053,513,523 - 53,542,430 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stx16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474124,952,793 - 24,974,554 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474124,951,985 - 24,980,049 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Stx16
706 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2539
Count of miRNA genes:738
Interacting mature miRNAs:960
Transcripts:ENSMUST00000044638, ENSMUST00000087908, ENSMUST00000134876, ENSMUST00000147038, ENSMUST00000155000, ENSMUST00000156054
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145228719179228841Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144515861180896594Mouse
1300622Cfld1_mcystic fibrosis lung disease 1 (mouse)Not determined2155823920181755017Mouse
1300676Prdt2_mprion disease incubation time 2 (mouse)Not determined2164515154181755017Mouse
1300688Nidd2k_mNidd2 on KK-A (mouse)Not determined2158078337178442452Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2149988902181755017Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151778297181755017Mouse
1301348Alcp5_malcohol preference locus 5 (mouse)Not determined2163486407181755017Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150212221181755017Mouse
1301677Alcp6_malcohol preference locus 6 (mouse)Not determined2163486407181755017Mouse
1301865Hdlq19_mHDL QTL 19 (mouse)Not determined2145518775179518926Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
1302003Sluc17_msusceptibility to lung cancer 17 (mouse)Not determined2162433493181755017Mouse
1302013Tbbmd3_mtotal body bone mineral density 3 (mouse)Not determined2145196949179197085Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142593476178442452Mouse
1357435Epfq2_mepididymal fat pad weight QTL 2 (mouse)Not determined2162736926178442452Mouse
1357537Lith12_mlithogenic gene 12 (mouse)Not determined2156196464181755017Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149236907181755017Mouse
1558991Tailq4_mtail length QTL 4 (mouse)Not determined2162736926178442452Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150212221181755017Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148664893181755017Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150212221181755017Mouse
11353826Bdln10_mbody length 10 (mouse)2140441482174441482Mouse
12910811Pwbwq3_mpre-weaning body weight QTL 3 (mouse)2169794802178920791Mouse
12738409Lfibq1_mliver fibrosis QTL 1 (mouse)2167716420179207088Mouse
12801456Intmrm1_mintima/media ratio modifier 1 (mouse)2142428347176428450Mouse
12801461Intim1_mintima modifier 1 (mouse)2142428347176428450Mouse
12910520Scgq3_mspontaneous crescentic glomerulonephritis QTL 3 (mouse)2151709273174389124Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148238204181755017Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152329820181755017Mouse

Markers in Region
AW553605  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382174,099,135 - 174,099,238UniSTSGRCm38
MGSCv372173,924,636 - 173,924,739UniSTSGRCm37
Celera2180,063,728 - 180,063,831UniSTS
Cytogenetic Map2H4UniSTS
Whitehead/MRC_RH21940.98UniSTS
AI648908  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382174,099,326 - 174,099,467UniSTSGRCm38
MGSCv372173,924,827 - 173,924,968UniSTSGRCm37
Celera2180,063,919 - 180,064,060UniSTS
Cytogenetic Map2H4UniSTS
Whitehead/MRC_RH21943.17UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001102423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001102424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001102425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_156433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK017291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL669896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC047206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC065804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC095989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP763202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY122006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY125296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX123636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000044638   ⟹   ENSMUSP00000039543
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2173,918,851 - 173,941,563 (+)Ensembl
GRCm38.p6 Ensembl2174,077,058 - 174,099,770 (+)Ensembl
RefSeq Acc Id: ENSMUST00000087908   ⟹   ENSMUSP00000085218
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2173,918,715 - 173,941,564 (+)Ensembl
GRCm38.p6 Ensembl2174,076,922 - 174,099,771 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134876   ⟹   ENSMUSP00000123275
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2173,918,111 - 173,932,527 (+)Ensembl
GRCm38.p6 Ensembl2174,076,318 - 174,090,734 (+)Ensembl
RefSeq Acc Id: ENSMUST00000147038   ⟹   ENSMUSP00000120279
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2173,918,115 - 173,935,319 (+)Ensembl
GRCm38.p6 Ensembl2174,076,322 - 174,093,526 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155000   ⟹   ENSMUSP00000119952
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2173,918,101 - 173,934,226 (+)Ensembl
GRCm38.p6 Ensembl2174,076,308 - 174,092,433 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156054   ⟹   ENSMUSP00000116618
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2173,918,859 - 173,938,760 (+)Ensembl
GRCm38.p6 Ensembl2174,077,066 - 174,096,967 (+)Ensembl
RefSeq Acc Id: NM_001102423   ⟹   NP_001095893
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392173,918,844 - 173,941,564 (+)NCBI
GRCm382174,077,051 - 174,099,771 (+)NCBI
MGSCv372173,902,552 - 173,925,272 (+)RGD
Celera2180,041,568 - 180,064,364 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001102424   ⟹   NP_001095894
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392173,918,844 - 173,941,564 (+)NCBI
GRCm382174,077,051 - 174,099,771 (+)NCBI
MGSCv372173,902,552 - 173,925,272 (+)RGD
Celera2180,041,568 - 180,064,364 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001102425   ⟹   NP_001095895
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392173,918,844 - 173,941,564 (+)NCBI
GRCm382174,077,051 - 174,099,771 (+)NCBI
MGSCv372173,902,552 - 173,925,272 (+)RGD
Celera2180,041,568 - 180,064,364 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001363029   ⟹   NP_001349958
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392173,918,844 - 173,941,564 (+)NCBI
GRCm382174,077,051 - 174,099,771 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001363030   ⟹   NP_001349959
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392173,918,095 - 173,941,564 (+)NCBI
GRCm382174,076,302 - 174,099,771 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001363031   ⟹   NP_001349960
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392173,918,844 - 173,941,564 (+)NCBI
GRCm382174,077,051 - 174,099,771 (+)NCBI
Sequence:
RefSeq Acc Id: NM_172675   ⟹   NP_766263
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392173,918,844 - 173,941,564 (+)NCBI
GRCm382174,077,051 - 174,099,771 (+)NCBI
MGSCv372173,902,552 - 173,925,272 (+)RGD
Celera2180,041,568 - 180,064,364 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_156433
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392173,918,844 - 173,941,564 (+)NCBI
GRCm382174,077,051 - 174,099,771 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006499436   ⟹   XP_006499499
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392173,918,056 - 173,941,564 (+)NCBI
GRCm382174,076,264 - 174,099,771 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006499437   ⟹   XP_006499500
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392173,918,055 - 173,941,564 (+)NCBI
GRCm382174,076,263 - 174,099,771 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006499438   ⟹   XP_006499501
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392173,918,056 - 173,941,564 (+)NCBI
GRCm382174,076,264 - 174,099,771 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006499439   ⟹   XP_006499502
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392173,918,055 - 173,941,564 (+)NCBI
GRCm382174,076,264 - 174,099,771 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006499440   ⟹   XP_006499503
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392173,918,052 - 173,941,564 (+)NCBI
GRCm382174,076,260 - 174,099,771 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250767   ⟹   XP_030106627
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392173,918,053 - 173,941,564 (+)NCBI
GRCm382174,076,261 - 174,099,771 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250771   ⟹   XP_030106631
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392173,918,844 - 173,941,564 (+)NCBI
GRCm382174,077,051 - 174,099,771 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250772   ⟹   XP_030106632
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392173,918,053 - 173,941,564 (+)NCBI
GRCm382174,076,261 - 174,099,771 (+)NCBI
Sequence:
RefSeq Acc Id: NP_766263   ⟸   NM_172675
- Peptide Label: isoform a
- UniProtKB: A2ACM7 (UniProtKB/Swiss-Prot),   Q8BVI5 (UniProtKB/Swiss-Prot),   F6X4N5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001095893   ⟸   NM_001102423
- Peptide Label: isoform b
- UniProtKB: F6X4N5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001095894   ⟸   NM_001102424
- Peptide Label: isoform c
- UniProtKB: Q0VGN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001095895   ⟸   NM_001102425
- Peptide Label: isoform d
- UniProtKB: Q0VGN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006499503   ⟸   XM_006499440
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006499500   ⟸   XM_006499437
- Peptide Label: isoform X1
- UniProtKB: Q8C0W8 (UniProtKB/TrEMBL),   Q0VGN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006499501   ⟸   XM_006499438
- Peptide Label: isoform X1
- UniProtKB: Q8C0W8 (UniProtKB/TrEMBL),   Q0VGN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006499502   ⟸   XM_006499439
- Peptide Label: isoform X1
- UniProtKB: Q8C0W8 (UniProtKB/TrEMBL),   Q0VGN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006499499   ⟸   XM_006499436
- Peptide Label: isoform X1
- UniProtKB: Q8C0W8 (UniProtKB/TrEMBL),   Q0VGN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030106627   ⟸   XM_030250767
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030106632   ⟸   XM_030250772
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001349959   ⟸   NM_001363030
- Peptide Label: isoform f
- UniProtKB: Q8C0W8 (UniProtKB/TrEMBL),   Q0VGN4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001349958   ⟸   NM_001363029
- Peptide Label: isoform e
- UniProtKB: F7CJY7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001349960   ⟸   NM_001363031
- Peptide Label: isoform g
RefSeq Acc Id: XP_030106631   ⟸   XM_030250771
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000120279   ⟸   ENSMUST00000147038
RefSeq Acc Id: ENSMUSP00000085218   ⟸   ENSMUST00000087908
RefSeq Acc Id: ENSMUSP00000123275   ⟸   ENSMUST00000134876
RefSeq Acc Id: ENSMUSP00000039543   ⟸   ENSMUST00000044638
RefSeq Acc Id: ENSMUSP00000116618   ⟸   ENSMUST00000156054
RefSeq Acc Id: ENSMUSP00000119952   ⟸   ENSMUST00000155000
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BVI5-F1-model_v2 AlphaFold Q8BVI5 1-326 view protein structure

Promoters
RGD ID:6832904
Promoter ID:MM_KWN:33290
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   MEF_B4,   MEF_B6
Transcripts:AK084083_D130084N16RIK,   ENSMUST00000087908,   ENSMUST00000094281,   NM_001102423,   NM_001102424,   NM_001102425,   OTTMUST00000039399
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362173,901,511 - 173,902,822 (+)MPROMDB
RGD ID:6832880
Promoter ID:MM_KWN:33289
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   ES_Cell,   Lung
Transcripts:ENSMUST00000044638,   OTTMUST00000039396,   OTTMUST00000039397,   OTTMUST00000039398,   UC008OEJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362173,901,591 - 173,902,091 (+)MPROMDB
RGD ID:6879936
Promoter ID:EPDNEW_M3419
Type:initiation region
Name:Stx16_1
Description:Mus musculus syntaxin 16 , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382174,076,318 - 174,076,378EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1923396 AgrOrtholog
Ensembl Genes ENSMUSG00000027522 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000044638.13 UniProtKB/TrEMBL
  ENSMUST00000087908 ENTREZGENE
  ENSMUST00000087908.10 UniProtKB/Swiss-Prot
  ENSMUST00000134876.8 UniProtKB/TrEMBL
  ENSMUST00000147038.8 UniProtKB/TrEMBL
  ENSMUST00000155000.8 UniProtKB/TrEMBL
  ENSMUST00000156054 ENTREZGENE
  ENSMUST00000156054.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.110 UniProtKB/TrEMBL
  1.20.58.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Syntaxin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Syntaxin/epimorphin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Syntaxin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  T_SNARE_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:228960 UniProtKB/Swiss-Prot
MGD MGI:1923396 ENTREZGENE
NCBI Gene 228960 ENTREZGENE
PANTHER PTHR19957 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR19957:SF83 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Syntaxin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Stx16 PhenoGen
PROSITE SYNTAXIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  T_SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART t_SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SNARE fusion complex UniProtKB/TrEMBL
  SSF47661 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2ACM7 ENTREZGENE
  B7ZCB7_MOUSE UniProtKB/TrEMBL
  B7ZCB8_MOUSE UniProtKB/TrEMBL
  B7ZCB9_MOUSE UniProtKB/TrEMBL
  F6X4N5 ENTREZGENE, UniProtKB/TrEMBL
  F7CJY7 ENTREZGENE, UniProtKB/TrEMBL
  Q0VGN4 ENTREZGENE, UniProtKB/TrEMBL
  Q8BVI5 ENTREZGENE
  Q8C0W8 ENTREZGENE, UniProtKB/TrEMBL
  STX16_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary A2ACM7 UniProtKB/Swiss-Prot