Ovol3 (ovo like zinc finger 3) - Rat Genome Database

Name: Ovol3
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Ovol3 (ovo like zinc finger 3) Chinchilla lanigera

Analyze

Symbol:

Ovol3

Name:

ovo like zinc finger 3

RGD ID:

8789233

Description:

ASSOCIATED WITH Brugada syndrome 5 (ortholog); hereditary spastic paraplegia 75 (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ovo-like 3; ovo-like zinc finger 3; putative transcription factor ovo-like protein 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	OVOL3 (ovo like zinc finger 3)	NCBI	Ortholog
Mus musculus (house mouse):	Ovol3 (ovo like zinc finger 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Ovol3 (ovo-like zinc finger 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	OVOL3 (ovo like zinc finger 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	OVOL3 (ovo like zinc finger 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ovol3 (ovo like zinc finger 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	OVOL3 (ovo like zinc finger 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	OVOL3 (ovo like zinc finger 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ovol3 (ovo like zinc finger 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	2,495,567 - 2,498,508 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955468	2,495,567 - 2,498,508 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Brugada syndrome 5 (ISO)

hereditary spastic paraplegia 75 (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Ovol3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	2,495,567 - 2,498,508 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955468	2,495,567 - 2,498,508 (-)	NCBI	ChiLan1.0	ChiLan1.0

OVOL3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	36,111,143 - 36,113,711 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	36,111,143 - 36,113,711 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	36,602,045 - 36,604,613 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	41,287,925 - 41,296,403 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	33,316,285 - 33,318,744 (+)	NCBI		Celera
Cytogenetic Map	19	q13.12	NCBI
HuRef	19	33,107,590 - 33,110,099 (+)	NCBI		HuRef
CHM1_1	19	36,603,447 - 36,605,955 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	38,656,961 - 38,659,529 (+)	NCBI		T2T-CHM13v2.0

Ovol3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	29,932,722 - 29,937,000 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	29,932,864 - 29,935,150 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	30,233,297 - 30,237,575 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	30,233,439 - 30,235,725 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	31,018,458 - 31,020,478 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	29,942,199 - 29,944,119 (-)	NCBI		MGSCv36	mm8
MGSCv36	7	22,511,594 - 22,513,514 (-)	NCBI		MGSCv36	mm8
Celera	7	24,837,823 - 24,839,843 (-)	NCBI		Celera
Cytogenetic Map	7	B1	NCBI
cM Map	7	17.34	NCBI

Ovol3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	94,612,417 - 94,616,053 (-)	NCBI		GRCr8
mRatBN7.2	1	85,484,956 - 85,488,592 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	85,484,956 - 85,488,592 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	90,901,557 - 90,905,174 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	99,368,921 - 99,372,542 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	92,659,818 - 92,663,435 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	91,037,531 - 91,041,167 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	91,038,886 - 91,041,121 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	1	88,688,299 - 88,690,534 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	92,174,474 - 92,178,324 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	1	79,859,395 - 79,863,031 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

OVOL3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	42,112,976 - 42,115,735 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	44,096,533 - 44,099,284 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	33,030,285 - 33,032,988 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	41,777,055 - 41,780,124 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	41,777,055 - 41,780,124 (+)	Ensembl	panpan1.1		panPan2

OVOL3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	116,587,569 - 116,594,086 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	116,587,599 - 116,589,497 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	115,992,945 - 115,999,678 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	117,190,335 - 117,197,055 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	117,190,570 - 117,192,468 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	116,757,730 - 116,764,462 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	116,377,910 - 116,384,643 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	117,433,080 - 117,439,809 (-)	NCBI		UU_Cfam_GSD_1.0

Ovol3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	11,357,768 - 11,360,128 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936922	128,196 - 130,197 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936922	128,196 - 130,197 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

OVOL3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	45,478,098 - 45,480,786 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	45,477,261 - 45,480,822 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	40,878,391 - 40,882,993 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

OVOL3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	31,016,622 - 31,020,104 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666073	8,817,498 - 8,820,290 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ovol3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	10,357,829 - 10,359,935 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624794	10,355,883 - 10,360,083 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013522433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01051823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01051824	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01064045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000018175 ⟹ ENSCLAP00000017997

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955468	2,495,567 - 2,498,508 (-)	Ensembl

RefSeq Acc Id:

XM_013522433 ⟹ XP_013377887

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955468	2,495,567 - 2,498,508 (-)	NCBI

Sequence:

show sequence

CTGCCTAAATTCTTGCCCCCTTTCTTGACCCCGAGTGGGGGTCCTAGTGCTTGTAGGTCCCTGG
AGGCTGCAGAGTTCCAGATTTAGGACTCTGGCCTCAGAGGAGCAGGATGAAAGGCAGGCCCAGG
GTAGAGGTAACTGGAGCCAGCTGTCAGCTCCCTGGGCTCCTCACAGAATTTGCATGAAGAGAAT
GAGGCTCCTCCATGGGTTCCCCCTCCTTTCTCCACCTGGGACAGCAGTCCTAGGGCTGAAGTCT
GACCAGCCGGTGAAGAGCCAGCTCTGTGTGGAGCCATCTCACCATTGCTGAGGTGATGCCCCGT
GTCTTCCTGGTGAGGAGTCGGCGTCCACAGCCACCCAATTGGGGCCACCTGCCTGACCAGCTAC
GGGGAGATGCCTATATCCCAGACTGCAGCAGCCTGGCTGGGCCACAAGCACAGCAGTCTTCCAG
CCTTGGGGACTCTTGGGCAACGGCCACACAGGGAACCCTGGCATCTGCTCCCAGGAGCCCCGGG
ACACTTGGCTGCCCTCTCTGCCCCAAGGCCTTCCCCCTGCAGCGCATGCTAACTCGGCACCTCA
AATGCCACAGCCCAGCACGCCGCCATGTGTGCCGCTGCTGTGGCAAGGGTTTCCACGATGCCTT
CGATCTCAAGCGTCACATGAGGACTCACACTGGAATCCGGCCATTCCGCTGTGGAGCTTGTGGG
AAAGCTTTTACACAGCGCTGCTCCCTTGAAGCACATCTTGCAAAAGTGCACGGGCAGCCGGCCA
GCTATGCTTACCGCGAGCGCCGCGAGAAGCTGCACGTGTGTGAGGACTGTGGCTTCACCAGCTC
GCGCCCGGACGCCTACGCACAGCACCGCACCCTGCATCGTGCTACCTGAGACACTCCAACAGCA
TCCTACCCGTGAGGCAAATAAACACAAGAAACATGCACACAGTACTTGG

hide sequence

Protein Sequences


Protein RefSeqs	XP_013377887	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000017997
	ENSCLAP00000017997.1

RefSeq Acc Id:	XP_013377887 ⟸ XM_013522433
- UniProtKB:	A0A8C2VRZ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPRVFLVRSRRPQPPNWGHLPDQLRGDAYIPDCSSLAGPQAQQSSSLGDSWATATQGTLASAPR SPGTLGCPLCPKAFPLQRMLTRHLKCHSPARRHVCRCCGKGFHDAFDLKRHMRTHTGIRPFRCG ACGKAFTQRCSLEAHLAKVHGQPASYAYRERREKLHVCEDCGFTSSRPDAYAQHRTLHRAT hide sequence

RefSeq Acc Id:

ENSCLAP00000017997 ⟸ ENSCLAT00000018175

Protein Domains

C2H2-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000012345	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000018175	ENTREZGENE
	ENSCLAT00000018175.1	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	Ovo-like	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
NCBI Gene	Ovol3	ENTREZGENE
PANTHER	PTHR10032	UniProtKB/TrEMBL
	TRANSCRIPTION FACTOR OVO-LIKE PROTEIN 3-RELATED	UniProtKB/TrEMBL
Pfam	zf-H2C2_2	UniProtKB/TrEMBL
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A0A8C2VRZ8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Ovol3	ovo like zinc finger 3		ovo-like zinc finger 3	Symbol and/or name change	5135510	APPROVED
2015-08-25	Ovol3	ovo-like zinc finger 3		ovo-like 3 (Drosophila)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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