Them5 (thioesterase superfamily member 5)

Gene: Them5 (thioesterase superfamily member 5) Chinchilla lanigera

Analyze

Symbol:

Them5

Name:

thioesterase superfamily member 5

RGD ID:

8786281

Description:

ENCODES a protein that exhibits long-chain fatty acyl-CoA hydrolase activity (ortholog); INVOLVED IN cardiolipin acyl-chain remodeling (ortholog); long-chain fatty-acyl-CoA metabolic process (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); immunodeficiency 42 (ortholog); FOUND IN mitochondrial matrix (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

acyl-coenzyme A thioesterase THEM5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955589	565,182 - 574,872 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955589	546,592 - 571,844 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

immunodeficiency 42 (ISO)

MHC class II deficiency (ISO)

parathyroid carcinoma (ISO)

severe congenital neutropenia 3 (ISO)

severe congenital neutropenia 5 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cardiolipin acyl-chain remodeling (ISO)

long-chain fatty-acyl-CoA metabolic process (ISO)

Cellular Component

mitochondrial matrix (ISO)

Molecular Function

long-chain fatty acyl-CoA hydrolase activity (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Them5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955589	565,182 - 574,872 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955589	546,592 - 571,844 (+)	NCBI	ChiLan1.0	ChiLan1.0

THEM5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	151,847,101 - 151,853,712 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	151,847,101 - 151,853,712 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	151,819,577 - 151,826,188 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	150,084,844 - 150,092,797 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	124,934,271 - 124,940,820 (-)	NCBI		Celera
Cytogenetic Map	1	q21.3	NCBI
HuRef	1	123,196,563 - 123,203,112 (-)	NCBI		HuRef
CHM1_1	1	153,214,902 - 153,221,451 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	150,970,601 - 150,977,165 (-)	NCBI		T2T-CHM13v2.0

Them5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	94,249,406 - 94,254,659 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	94,249,406 - 94,254,659 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	94,342,099 - 94,347,352 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	94,342,099 - 94,347,352 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	94,146,021 - 94,151,272 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	94,427,503 - 94,432,753 (+)	NCBI		MGSCv36	mm8
Celera	3	95,788,493 - 95,793,740 (+)	NCBI		Celera
Cytogenetic Map	3	F2.1	NCBI
cM Map	3	40.52	NCBI

Them5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	184,665,335 - 184,675,041 (+)	NCBI		GRCr8
mRatBN7.2	2	181,980,783 - 181,986,002 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	181,980,783 - 181,986,002 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	189,643,935 - 189,649,152 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	187,448,061 - 187,453,284 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	182,276,407 - 182,281,624 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	195,582,781 - 195,588,000 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	195,582,781 - 195,588,000 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	215,061,475 - 215,066,694 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	189,315,151 - 189,321,030 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	174,531,200 - 174,536,419 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

THEM5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	97,967,502 - 97,977,408 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	97,718,686 - 97,735,803 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	127,205,721 - 127,212,112 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	130,849,797 - 130,856,529 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	130,849,815 - 130,856,523 (-)	Ensembl	panpan1.1		panPan2

THEM5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	60,857,348 - 60,865,789 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	60,857,350 - 60,865,579 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	60,301,796 - 60,310,146 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	61,876,913 - 61,885,249 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	61,876,933 - 61,885,040 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	60,703,724 - 60,712,049 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	60,789,891 - 60,798,385 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	61,519,000 - 61,527,351 (-)	NCBI		UU_Cfam_GSD_1.0

Them5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	23,006,213 - 23,014,051 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936580	2,036,704 - 2,043,897 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936580	2,036,595 - 2,044,053 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

THEM5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	97,332,432 - 97,359,428 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	97,319,579 - 97,358,602 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	106,343,969 - 106,383,109 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Them5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624772	19,523,526 - 19,530,041 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624772	19,523,721 - 19,530,019 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005414538	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005414543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005414545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013509937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013509938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01076175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01076176	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDJ01020946	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000000633 ⟹ ENSCLAP00000000602

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955589	565,182 - 574,872 (+)	Ensembl

RefSeq Acc Id:

XM_005414538 ⟹ XP_005414595

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955589	546,602 - 571,844 (+)	NCBI

Sequence:

show sequence

AAGTCAAAATGGTTATATATTGACAGTCTTTTACGGCCAACCCTATTAACTTTGGGATAGTTTA
ATATTACTTTACTAGTCATCCTTCTACAGCCAGAAGACCAGCTGGAGTGCTTCAGAACCACTCA
CCCTGGCATGCCCAAGCCAGAGGAAGACCTGGGTCCAGCAAGCTGCCCACAGCAGCGTGTAAGC
TGCTGGAGAGGCCCGGCGTAGGGAGCCCCACACAGGCTTCCAGAGAGCGGGAAACTCAGAGAGC
CTGGGGAAGTGCTCAGGAGACAGCTGACTCACAGTCTGACAGCTGTGTATTCCCAACCTGCCTT
TCAAGTACAGTAATCCTGGAATGTCAGAGACAGTGGGCGCTCATGAGAATTGTGTCTCGCAGCT
TTCTTTGCATAGAAACTAGCCGTGTTTAAACAAAACAGAGTGCGAAACTGAGGGAACAAGCAGC
CGCTGCTGTCTAGCTTCAGTCAGCTGGGGGAGAGTAAGTTCAGACAGCGAACCTTTACCCTGTC
ATTCGGGTGTCTGAACAGGATTGCGGGACAGCGAGAGAGCACCAGAAGCCCACCAAGGCCTAAG
AGCCTAACCCGAAGAATACAGACCACTAGTTTTCTTCCTGATAGGTGGTGGAGCCCCTTTGTAC
CACTTTCCCCGCTTTCCCGCCCGCTTTCCCAGTTTTGGTTGTCACACTGGTTGGTTGCATCCGG
GGTGCACCGCGGGACCTGCGATCCCGTATAAGATCAATGCGGGGAAAAGCTCAGTTGCTGTTAA
CACAGGGTTCCCTGCTTTGCAGCAGACTGTAGGCTTCGCCCTGGCACCCTTGCCGTCGTGGGTT
CTATTCTGACAAGTACGTGAGGCGGCTGGACAGTCAGGAAGCAGGGAGGTGCCGTCAGACCCGT
CAGCAGCTCTCCACCGGCTCGCCGTGTGCCTTGGTGGAACTTCTCACTGCCTGTTTCCCTTCCC
ACACCAGCCGGTGAACACCGTTGTGAGTGAAGAGTAGGACTTGATGCTGCTCAGTGTTGAGATA
TCTTTGTACAAACGTAATTGGACAGTCATATAGGAATGAAATAGGACCTCCAAAAGATATAGGA
GGAATATAACTCCCAGCCTCCTAGATGGCAAGACGCTGGTGTAAAGAAGGATAGCCTGGAGGCA
CTGACAGGGCAGAAGTGAGGACACGTCTTTTCCAGCGTTGGATCCTGTTACAGACTGACGGTGG
CTTCCTCTGCCTCGAAATCCGCTCTGGGGGAGGAACCCTGTCAGTCAACAGCAGCCCTGCAGAC
AGATTCAGCCCTGCCAAGTCGCCCAAGAATGCAGACCTGTGAGACCGTGGCCCAGACTCAGTTT
ACGCAGTACCAGGTTCCTGACCCGCGGAAATGCTTCTCATCCTGGCCAGACTGTCCCACAGGAG
ATCTTCTGGCAGCCCATGATCTTCCGTCACCCTGGAAAGTCGGAGCCTGGTCCCGAGCCTTCCA
GACAGGTGTACACCACTACACTTGGCTCAGGCTCCACCTCTCGGATGTGCTGACCATGTCTCAC
ATTGCCACACCAGGGACCAAGCTTCTAGTACATAAACCTTGGGAGGTCACACTCAAGCCACAGC
AGAAGGATACCTGGAGTCACCCTGGATCCAAGCAGGCATTTAGCCATGATGAGGGGAGGCTTCC
AGGCAGTAGCGAGACTTGGCCTCCACACAGCCCTCCGCAGGACCCTCCGTATCCCGCCCAGACT
CAGCTTTGCCTCAGCAACTGGATCTTCCACAGGCTCCCTGGTCTCAAGATTCTGTCCGGAGAAG
ACAGACTTGAAGGATTATGCTCTTCCCAATGCCAGCTGGGGTCCAGACATGCTGAGCCTGTACC
AAGAGCTTCTGGAGAAGACCAGCTCAGAAGGCTGGATCAAACTGCCCTCATTCAAGTCCAACAG
AGACCACATCCAAGGGCTAAAGCTCCCATCTGGCTTGGTAGCTACCTCAGGTGCATCCAAGTGG
CAGGACAAGGCTACGAGTATGTCATCTTTTTCCACCCAGCCAAGCAGAAGTCCGTCTGTCTTTT
CCAACCAGGCCCCTACCTGGAGGGGGCTCCAGGGTTTGCCCATGGAGGGTCTCTGGCAGCCATG
ATGGACGAGACCTTTTCTAAAACCGCCTACCTAGCTGGAGAGGGGCTGTTCACGCTAAGCCTCA
ACATCAGGTTCAAAAACTTGCTCCCCGTGGGCTCTCTGGCTGTCCTGAACGTCCAAGTAGAGAA
GATTGAGGACCAGAAGCTCTACATGTCCTGCATCGCCCAGAGCAGAGACCAGCAGACAGTCTTT
GCCAAGTCCTCAGGTGTCTTCCTTCAGCTGCAGCTGGAAGCAGAGTCACCCCAGGACTAGTCAC
TATGCCAATAGCAGAGTCAAGCCTGATGGCCCCAGCCCCGTCTGCCGGGAACCCAGCACAACAG
GAAGCAAGAGCTATGGGTGTTGAGAGGCCCTTTCTCTGAGCAAATAAACTTCCAGTGCCCCATG
CTCAGCCTTCTTGTAA

hide sequence

RefSeq Acc Id:

XM_005414543 ⟹ XP_005414600

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955589	546,592 - 570,818 (+)	NCBI

Sequence:

show sequence

AAAAAAAAAAAAGTCAAAATGGTTATATATTGACAGTCTTTTACGGCCAACCCTATTAACTTTG
GGATAGTTTAATATTACTTTACTAGTCATCCTTCTACAGCCAGAAGACCAGCTGGAGTGCTTCA
GAACCACTCACCCTGGCATGCCCAAGCCAGAGGAAGACCTGGGTCCAGCAAGCTGCCCACAGCA
GCGTGTAAGCTGCTGGAGAGGCCCGGCGTAGGGAGCCCCACACAGGCTTCCAGAGAGCGGGAAA
CTCAGAGAGCCTGGGGAAGTGCTCAGGAGACAGCTGACTCACAGTCTGACAGCTGTGTATTCCC
AACCTGCCTTTCAAGTACAGTAATCCTGGAATGTCAGAGACAGTGGGCGCTCATGAGAATTGTG
TCTCGCAGCTTTCTTTGCATAGAAACTAGCCGTGTTTAAACAAAACAGAGTGCGAAACTGAGGG
AACAAGCAGCCGCTGCTGTCTAGCTTCAGTCAGCTGGGGGAGAGTAAGTTCAGACAGCGAACCT
TTACCCTGTCATTCGGGTGTCTGAACAGGATTGCGGGACAGCGAGAGAGCACCAGAAGCCCACC
AAGGCCTAAGAGCCTAACCCGAAGAATACAGACCACTAGTTTTCTTCCTGATAGGTGGTGGAGC
CCCTTTGTACCACTTTCCCCGCTTTCCCGCCCGCTTTCCCAGTTTTGGTTGTCACACTGGTTGG
TTGCATCCGGGGTGCACCGCGGGACCTGCGATCCCGTATAAGATCAATGCGGGGAAAAGCTCAG
TTGCTGTTAACACAGGGTTCCCTGCTTTGCAGCAGACTGTAGGCTTCGCCCTGGCACCCTTGCC
GTCGTGGGTTCTATTCTGACAAGTACGTGAGGCGGCTGGACAGTCAGGAAGCAGGGAGGTGCCG
TCAGACCCGTCAGCAGCTCTCCACCGGCTCGCCGTGTGCCTTGGTGGAACTTCTCACTGCCTGT
TTCCCTTCCCACACCAGCCGGTGAACACCGTTGTGAGTGAAGAGTAGGACTTGATGCTGCTCAG
TGTTGAGATATCTTTGTACAAACGTAATTGGACAGTCATATAGGAATGAAATAGGACCTCCAAA
AGATATAGGAGGAATATAACTCCCAGCCTCCTAGATGGCAAGACGCTGGTGTAAAGAAGGATAG
CCTGGAGGCACTGACAGGGCAGAAGTGAGGACACGTCTTTTCCAGCGTTGGATCCTGTTACAGA
CTGACGGTGGCTTCCTCTGCCTCGAAATCCGCTCTGGGGGAGGAACCCTGTCAGTCAACAGCAG
CCCTGCAGACAGATTCAGCCCTGCCAAGTCGCCCAAGAATGCAGACCTGTGAGACCGTGGCCCA
GACTCAGTTTACGCAGTACCAGGTTCCTGACCCGCGGAAATGCTTCTCATCCTGGCCAGACTGT
CCCACAGGAGATCTTCTGGCAGCCCATGATCTTCCGTCACCCTGGAAAGTCGGAGCCTGGTCCC
GAGCCTTCCAGACAGGTGTACACCACTACACTTGGCTCAGGCTCCACCTCTCGGATGTGCTGAC
CATGTCTCACATTGCCACACCAGGGACCAAGCTTCTAGTACATAAACCTTGGGAGGTCACACTC
AAGCCACAGCAGAAGGATACCTGGAGTCACCCTGGATCCAAGCAGGCATTTAGCCATGATGAGG
GGAGGCTTCCAGGCAGTAGCGAGACTTGGCCTCCACACAGCCCTCCGCAGGACCCTCCGTATCC
CGCCCAGACTCAGCTTTGCCTCAGCAACTGGATCTTCCACAGGCTCCCTGGTCTCAAGATTCTG
TCCGGAGAAGACAGACTTGAAGGATTATGCTCTTCCCAATGCCAGCTGGGGTCCAGACATGCTG
AGCCTGTACCAAGAGCTTCTGGAGAAGACCAGCTCAGAAGGCTGGATCAAACTGCCCTCATTCA
AGTCCAACAGAGACCACATCCAAGGGCTAAAGCTCCCATCTGGCTTGGTAGCTACCTCAGGTGC
ATCCAAGTGGCAGGACAAGGCTACGAGTATGTCATCTTTTTCCACCCAGCCAAGCAGAAGTCCG
TCTGTCTTTTCCAACCAGGCCCCTACCTGGAGGGGGCTCCAGGAAATAAAATACTTGGTCAGTG
GTAACACCTGCTGAAGCAAAACCAAAGAAAAGCTCGGCTAATGTTGACTGATTTGCTCACCTGT
TTGGCTGCCTGAGGCTGAAGATCCACCTTTGGAAGGCTCTGGGGAGGGGAGGAGCGCGGGGTCG
TCACTTCCCGGGGGGAAGATCTGCCCCGTGGCCCCAGCCCTGGACTTGCTCCCCACCCACAC

hide sequence

RefSeq Acc Id:

XM_005414545 ⟹ XP_005414602

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955589	556,346 - 571,844 (+)	NCBI

Sequence:

show sequence

GTCTCACATTGCCACACCAGGGACCAAGCTTCTAGTACATAAACCTTGGGAGGTCACACTCAAG
CCACAGCAGAAGGATACCTGGAGTCACCCTGGATCCAAGCAGGCATTTAGCCATGATGAGGGGA
GGCTTCCAGGCAGTAGCGAGACTTGGCCTCCACACAGCCCTCCGCAGGACCCTCCGTATCCCGC
CCAGACTCAGCTTTGCCTCAGCAACTGGATCTTCCACAGGCTCCCTGGTCTCAAGATTCTGTCC
GGAGAAGACAGACTTGAAGGATTATGCTCTTCCCAATGCCAGCTGGGGTCCAGACATGCTGAGC
CTGTACCAAGAGCTTCTGGAGAAGACCAGCTCAGAAGGCTGGATCAAACTGCCCTCATTCAAGT
CCAACAGAGACCACATCCAAGGGCTAAAGCTCCCATCTGGCTTGGTAGCTACCTCAGACAAAGG
TGACTATTGCATCTTCACCAGGTGCATCCAAGTGGCAGGACAAGGCTACGAGTATGTCATCTTT
TTCCACCCAGCCAAGCAGAAGTCCGTCTGTCTTTTCCAACCAGGCCCCTACCTGGAGGGGGCTC
CAGGGTTTGCCCATGGAGGGTCTCTGGCAGCCATGATGGACGAGACCTTTTCTAAAACCGCCTA
CCTAGCTGGAGAGGGGCTGTTCACGCTAAGCCTCAACATCAGGTTCAAAAACTTGCTCCCCGTG
GGCTCTCTGGCTGTCCTGAACGTCCAAGTAGAGAAGATTGAGGACCAGAAGCTCTACATGTCCT
GCATCGCCCAGAGCAGAGACCAGCAGACAGTCTTTGCCAAGTCCTCAGGTGTCTTCCTTCAGCT
GCAGCTGGAAGCAGAGTCACCCCAGGACTAGTCACTATGCCAATAGCAGAGTCAAGCCTGATGG
CCCCAGCCCCGTCTGCCGGGAACCCAGCACAACAGGAAGCAAGAGCTATGGGTGTTGAGAGGCC
CTTTCTCTGAGCAAATAAACTTCCAGTGCCCCATGCTCAGCCTTCTTGTAA

hide sequence

RefSeq Acc Id:

XM_013509937 ⟹ XP_013365391

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955589	553,680 - 571,844 (+)	NCBI

Sequence:

show sequence

TCCTGACCCGCGGAAATGGTCTTCTCATCCTGGCCAGACTGTCCCACAGGAGATCTTCTGGCAG
CCCATGATCTTCCGTCACCCTGGAAAGTCGGAGCCTGGTCCCGAGCCTTCCAGACAGGTGTACA
CCACTACACTTGGCTCAGGCTCCACCTCTCGGATGTGCTGACCATGTCTCACATTGCCACACCA
GGGACCAAGCTTCTAGTACATAAACCTTGGGAGGTCACACTCAAGCCACAGCAGAAGGATACCT
GGAGTCACCCTGGATCCAAGCAGGCATTTAGCCATGATGAGGGGAGGCTTCCAGGCAGTAGCGA
GACTTGGCCTCCACACAGCCCTCCGCAGGACCCTCCGTATCCCGCCCAGACTCAGCTTTGCCTC
AGCAACTGGATCTTCCACAGGCTCCCTGGTCTCAAGATTCTGTCCGGAGAAGACAGACTTGAAG
GATTATGCTCTTCCCAATGCCAGCTGGGGTCCAGACATGCTGAGCCTGTACCAAGAGCTTCTGG
AGAAGACCAGCTCAGAAGGCTGGATCAAACTGCCCTCATTCAAGTCCAACAGAGACCACATCCA
AGGGCTAAAGCTCCCATCTGGCTTGGTAGCTACCTCAGGTGCATCCAAGTGGCAGGACAAGGCT
ACGAGTATGTCATCTTTTTCCACCCAGCCAAGCAGAAGTCCGTCTGTCTTTTCCAACCAGGCCC
CTACCTGGAGGGGGCTCCAGGGTTTGCCCATGGAGGGTCTCTGGCAGCCATGATGGACGAGACC
TTTTCTAAAACCGCCTACCTAGCTGGAGAGGGGCTGTTCACGCTAAGCCTCAACATCAGGTTCA
AAAACTTGCTCCCCGTGGGCTCTCTGGCTGTCCTGAACGTCCAAGTAGAGAAGATTGAGGACCA
GAAGCTCTACATGTCCTGCATCGCCCAGAGCAGAGACCAGCAGACAGTCTTTGCCAAGTCCTCA
GGTGTCTTCCTTCAGCTGCAGCTGGAAGCAGAGTCACCCCAGGACTAGTCACTATGCCAATAGC
AGAGTCAAGCCTGATGGCCCCAGCCCCGTCTGCCGGGAACCCAGCACAACAGGAAGCAAGAGCT
ATGGGTGTTGAGAGGCCCTTTCTCTGAGCAAATAAACTTCCAGTGCCCCATGCTCAGCCTTCTT
GTAA

hide sequence

RefSeq Acc Id:

XM_013509938 ⟹ XP_013365392

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955589	565,079 - 571,844 (+)	NCBI

Sequence:

show sequence

TCTGGAAAAAGCCTGTGACACAAAGGAGCGGCTAGGGCGAGGTGGCTACACCCACAGCTAGCGC
ACCACTGCACTGTGCTCTCTTACCTTGTCGCCTCCTCAGGAGTCACCCTGGATCCAAGCAGGCA
TTTAGCCATGATGAGGGGAGGCTTCCAGGCAGTAGCGAGACTTGGCCTCCACACAGCCCTCCGC
AGGACCCTCCGTATCCCGCCCAGACTCAGCTTTGCCTCAGCAACTGGATCTTCCACAGGCTCCC
TGGTCTCAAGATTCTGTCCGGAGAAGACAGACTTGAAGGATTATGCTCTTCCCAATGCCAGCTG
GGGTCCAGACATGCTGAGCCTGTACCAAGAGCTTCTGGAGAAGACCAGCTCAGAAGGCTGGATC
AAACTGCCCTCATTCAAGTCCAACAGAGACCACATCCAAGGGCTAAAGCTCCCATCTGGCTTGG
TAGCTACCTCAGACAAAGGTGACTATTGCATCTTCACCAGGTGCATCCAAGTGGCAGGACAAGG
CTACGAGTATGTCATCTTTTTCCACCCAGCCAAGCAGAAGTCCGTCTGTCTTTTCCAACCAGGC
CCCTACCTGGAGGGGGCTCCAGGGTTTGCCCATGGAGGGTCTCTGGCAGCCATGATGGACGAGA
CCTTTTCTAAAACCGCCTACCTAGCTGGAGAGGGGCTGTTCACGCTAAGCCTCAACATCAGGTT
CAAAAACTTGCTCCCCGTGGGCTCTCTGGCTGTCCTGAACGTCCAAGTAGAGAAGATTGAGGAC
CAGAAGCTCTACATGTCCTGCATCGCCCAGAGCAGAGACCAGCAGACAGTCTTTGCCAAGTCCT
CAGGTGTCTTCCTTCAGCTGCAGCTGGAAGCAGAGTCACCCCAGGACTAGTCACTATGCCAATA
GCAGAGTCAAGCCTGATGGCCCCAGCCCCGTCTGCCGGGAACCCAGCACAACAGGAAGCAAGAG
CTATGGGTGTTGAGAGGCCCTTTCTCTGAGCAAATAAACTTCCAGTGCCCCATGCTCAGCCTTC
TTGTAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005414595	(Get FASTA)	NCBI Sequence Viewer
	XP_005414600	(Get FASTA)	NCBI Sequence Viewer
	XP_005414602	(Get FASTA)	NCBI Sequence Viewer
	XP_013365391	(Get FASTA)	NCBI Sequence Viewer
	XP_013365392	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000000602
	ENSCLAP00000000602.1

RefSeq Acc Id:

XP_005414595 ⟸ XM_005414538

- Peptide Label:

isoform X1

- Sequence:

show sequence

MQTCETVAQTQFTQYQVPDPRKCFSSWPDCPTGDLLAAHDLPSPWKVGAWSRAFQTGVHHYTWL
RLHLSDVLTMSHIATPGTKLLVHKPWEVTLKPQQKDTWSHPGSKQAFSHDEGRLPGSSETWPPH
SPPQDPPYPAQTQLCLSNWIFHRLPGLKILSGEDRLEGLCSSQCQLGSRHAEPVPRASGEDQLR
RLDQTALIQVQQRPHPRAKAPIWLGSYLRCIQVAGQGYEYVIFFHPAKQKSVCLFQPGPYLEGA
PGFAHGGSLAAMMDETFSKTAYLAGEGLFTLSLNIRFKNLLPVGSLAVLNVQVEKIEDQKLYMS
CIAQSRDQQTVFAKSSGVFLQLQLEAESPQD

hide sequence

RefSeq Acc Id:

XP_005414600 ⟸ XM_005414543

- Peptide Label:

isoform X3

- Sequence:

show sequence

MQTCETVAQTQFTQYQVPDPRKCFSSWPDCPTGDLLAAHDLPSPWKVGAWSRAFQTGVHHYTWL
RLHLSDVLTMSHIATPGTKLLVHKPWEVTLKPQQKDTWSHPGSKQAFSHDEGRLPGSSETWPPH
SPPQDPPYPAQTQLCLSNWIFHRLPGLKILSGEDRLEGLCSSQCQLGSRHAEPVPRASGEDQLR
RLDQTALIQVQQRPHPRAKAPIWLGSYLRCIQVAGQGYEYVIFFHPAKQKSVCLFQPGPYLEGA
PGNKILGQW

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RefSeq Acc Id:	XP_005414602 ⟸ XM_005414545
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C2UK58 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMRGGFQAVARLGLHTALRRTLRIPPRLSFASATGSSTGSLVSRFCPEKTDLKDYALPNASWGP DMLSLYQELLEKTSSEGWIKLPSFKSNRDHIQGLKLPSGLVATSDKGDYCIFTRCIQVAGQGYE YVIFFHPAKQKSVCLFQPGPYLEGAPGFAHGGSLAAMMDETFSKTAYLAGEGLFTLSLNIRFKN LLPVGSLAVLNVQVEKIEDQKLYMSCIAQSRDQQTVFAKSSGVFLQLQLEAESPQD hide sequence

RefSeq Acc Id:

XP_013365391 ⟸ XM_013509937

- Peptide Label:

isoform X2

- Sequence:

show sequence

MVFSSWPDCPTGDLLAAHDLPSPWKVGAWSRAFQTGVHHYTWLRLHLSDVLTMSHIATPGTKLL
VHKPWEVTLKPQQKDTWSHPGSKQAFSHDEGRLPGSSETWPPHSPPQDPPYPAQTQLCLSNWIF
HRLPGLKILSGEDRLEGLCSSQCQLGSRHAEPVPRASGEDQLRRLDQTALIQVQQRPHPRAKAP
IWLGSYLRCIQVAGQGYEYVIFFHPAKQKSVCLFQPGPYLEGAPGFAHGGSLAAMMDETFSKTA
YLAGEGLFTLSLNIRFKNLLPVGSLAVLNVQVEKIEDQKLYMSCIAQSRDQQTVFAKSSGVFLQ
LQLEAESPQD

hide sequence

RefSeq Acc Id:	XP_013365392 ⟸ XM_013509938
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C2UK58 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMRGGFQAVARLGLHTALRRTLRIPPRLSFASATGSSTGSLVSRFCPEKTDLKDYALPNASWGP DMLSLYQELLEKTSSEGWIKLPSFKSNRDHIQGLKLPSGLVATSDKGDYCIFTRCIQVAGQGYE YVIFFHPAKQKSVCLFQPGPYLEGAPGFAHGGSLAAMMDETFSKTAYLAGEGLFTLSLNIRFKN LLPVGSLAVLNVQVEKIEDQKLYMSCIAQSRDQQTVFAKSSGVFLQLQLEAESPQD hide sequence

RefSeq Acc Id:

ENSCLAP00000000602 ⟸ ENSCLAT00000000633

Protein Domains

Thioesterase

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000000481	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000000633	ENTREZGENE
	ENSCLAT00000000633.1	UniProtKB/TrEMBL
Gene3D-CATH	Hotdog Thioesterase	UniProtKB/TrEMBL
InterPro	HotDog_dom_sf	UniProtKB/TrEMBL
	Thioestr_dom	UniProtKB/TrEMBL
NCBI Gene	Them5	ENTREZGENE
PANTHER	ACYL-COENZYME A THIOESTERASE THEM5	UniProtKB/TrEMBL
	ACYL-COENZYME A THIOESTERASE THEM5	UniProtKB/TrEMBL
Pfam	4HBT	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54637	UniProtKB/TrEMBL
UniProt	A0A8C2UK58	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar