Actr8 (actin related protein 8) - Rat Genome Database

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Gene: Actr8 (actin related protein 8) Chinchilla lanigera
Analyze
Symbol: Actr8
Name: actin related protein 8
RGD ID: 8752822
Description: INVOLVED IN chromatin remodeling (ortholog); positive regulation of DNA repair (ortholog); positive regulation of DNA-templated transcription (ortholog); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; FOUND IN centrosome (ortholog); Ino80 complex (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: actin-related protein 8; ARP8 actin related protein 8 homolog; ARP8 actin-related protein 8 homolog; ARP8 actin-related protein 8 homolog (yeast)
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554303,851,758 - 3,867,291 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554303,851,758 - 3,867,291 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centrosome  (ISO)
Ino80 complex  (ISO)
nucleoplasm  (ISO)
nucleus  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Actr8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554303,851,758 - 3,867,291 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554303,851,758 - 3,867,291 (-)NCBIChiLan1.0ChiLan1.0
ACTR8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38353,858,992 - 53,882,152 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl353,867,066 - 53,882,152 (-)EnsemblGRCh38hg38GRCh38
GRCh37353,901,093 - 53,916,179 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36353,876,195 - 53,891,227 (-)NCBINCBI36Build 36hg18NCBI36
Build 34353,876,194 - 53,891,227NCBI
Celera353,868,375 - 53,883,507 (-)NCBICelera
Cytogenetic Map3p21.1NCBI
HuRef353,949,611 - 53,964,746 (-)NCBIHuRef
CHM1_1353,852,720 - 53,867,846 (-)NCBICHM1_1
T2T-CHM13v2.0353,892,233 - 53,915,392 (-)NCBIT2T-CHM13v2.0
Actr8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391429,700,294 - 29,717,409 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1429,700,294 - 29,728,311 (+)EnsemblGRCm39 Ensembl
GRCm381429,978,337 - 29,995,452 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1429,978,337 - 30,006,354 (+)EnsemblGRCm38mm10GRCm38
MGSCv371430,791,523 - 30,806,407 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361428,807,395 - 28,822,222 (+)NCBIMGSCv36mm8
Celera1426,234,169 - 26,249,053 (+)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1418.37NCBI
Actr8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8165,170,649 - 5,192,883 (+)NCBIGRCr8
mRatBN7.2165,164,131 - 5,186,353 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,164,129 - 5,178,577 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx165,176,130 - 5,190,717 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0166,321,559 - 6,336,144 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0165,173,601 - 5,188,208 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0166,047,977 - 6,062,586 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl166,048,004 - 6,062,550 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0165,979,091 - 5,995,218 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4165,318,503 - 5,333,058 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1165,317,476 - 5,333,062 (+)NCBI
Celera1610,005,558 - 10,020,138 (-)NCBICelera
Cytogenetic Map16p16NCBI
ACTR8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2253,850,866 - 53,874,121 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1353,856,918 - 53,878,891 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0353,802,916 - 53,820,244 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1355,023,876 - 55,041,182 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl355,027,468 - 55,041,182 (-)Ensemblpanpan1.1panPan2
ACTR8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12036,118,471 - 36,135,064 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2036,118,477 - 36,133,881 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2036,055,973 - 36,072,775 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02036,392,796 - 36,409,596 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2036,392,795 - 36,410,398 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12035,834,496 - 35,851,291 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02036,193,104 - 36,209,900 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02036,410,554 - 36,427,352 (+)NCBIUU_Cfam_GSD_1.0
Actr8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118171,379,835 - 171,403,888 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364734,525,837 - 4,542,497 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364734,523,865 - 4,542,476 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACTR8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1335,963,945 - 35,987,140 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11335,951,601 - 35,988,501 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21339,034,535 - 39,058,627 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACTR8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12215,250,693 - 15,264,817 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2215,252,097 - 15,264,706 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041151,626,480 - 151,639,706 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Actr8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248223,319,439 - 3,335,360 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248223,319,694 - 3,335,359 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000013350   ⟹   ENSCLAP00000013199
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554303,851,758 - 3,867,291 (-)Ensembl
RefSeq Acc Id: XM_005387376   ⟹   XP_005387433
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554303,851,758 - 3,867,291 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013515673   ⟹   XP_013371127
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554303,851,758 - 3,867,121 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005387433 (Get FASTA)   NCBI Sequence Viewer  
  XP_013371127 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000013199
  ENSCLAP00000013199.1
Reference Protein Sequences
RefSeq Acc Id: XP_005387433   ⟸   XM_005387376
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VBP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013371127   ⟸   XM_013515673
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000013199   ⟸   ENSCLAT00000013350


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009113 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000013350 ENTREZGENE
  ENSCLAT00000013350.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.36.90 UniProtKB/TrEMBL
  3.30.420.40 UniProtKB/TrEMBL
InterPro Actin UniProtKB/TrEMBL
  ATPase_NBD UniProtKB/TrEMBL
NCBI Gene Actr8 ENTREZGENE
PANTHER PTHR11937 UniProtKB/TrEMBL
  PTHR11937:SF13 UniProtKB/TrEMBL
Pfam Actin UniProtKB/TrEMBL
SMART ACTIN UniProtKB/TrEMBL
Superfamily-SCOP SSF53067 UniProtKB/TrEMBL
UniProt A0A8C2VBP7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-15 Actr8  actin related protein 8    ARP8 actin related protein 8 homolog  Symbol and/or name change 5135510 APPROVED
2017-05-09 Actr8  ARP8 actin related protein 8 homolog    ARP8 actin-related protein 8 homolog  Symbol and/or name change 5135510 APPROVED
2016-08-03 Actr8  ARP8 actin-related protein 8 homolog    ARP8 actin-related protein 8 homolog (yeast)  Symbol and/or name change 5135510 APPROVED