Mrps18c (mitochondrial ribosomal protein S18C)

Gene: Mrps18c (mitochondrial ribosomal protein S18C) Chinchilla lanigera

Analyze

Symbol:

Mrps18c

Name:

mitochondrial ribosomal protein S18C

RGD ID:

8742666

Description:

ASSOCIATED WITH chromosome 4q21 deletion syndrome (ortholog); FOUND IN mitochondrial small ribosomal subunit (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

28S ribosomal protein S18c, mitochondrial

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955474	6,274,545 - 6,280,871 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 4q21 deletion syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

mitochondrial small ribosomal subunit (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Mrps18c
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955474	6,274,545 - 6,280,871 (-)	NCBI	ChiLan1.0	ChiLan1.0

MRPS18C
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	83,456,058 - 83,462,298 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	83,455,932 - 83,469,735 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	84,377,211 - 84,383,451 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	84,596,196 - 84,601,900 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	84,734,350 - 84,740,055	NCBI
Celera	4	81,667,571 - 81,673,381 (+)	NCBI		Celera
Cytogenetic Map	4	q21.23	NCBI
HuRef	4	80,119,893 - 80,125,705 (+)	NCBI		HuRef
CHM1_1	4	84,353,692 - 84,359,503 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	86,786,125 - 86,792,364 (+)	NCBI		T2T-CHM13v2.0

Mrps18c
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	100,946,625 - 100,952,333 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	100,946,493 - 100,952,337 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	100,798,759 - 100,804,467 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	100,798,627 - 100,804,471 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	101,227,778 - 101,233,486 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	101,039,061 - 101,044,769 (+)	NCBI		MGSCv36	mm8
Celera	5	98,126,835 - 98,132,542 (+)	NCBI		Celera
Cytogenetic Map	5	E4	NCBI
cM Map	5	48.52	NCBI

Mrps18c
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	9,116,688 - 9,122,943 (-)	NCBI		GRCr8
mRatBN7.2	14	8,812,301 - 8,818,538 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	8,791,330 - 8,818,516 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	8,780,210 - 8,786,437 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	10,080,058 - 10,086,285 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	8,776,671 - 8,782,898 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	10,440,691 - 10,446,909 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	10,440,691 - 10,446,909 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	10,388,657 - 10,394,875 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	10,096,209 - 10,102,427 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	10,096,518 - 10,102,420 (-)	NCBI
Celera	14	8,921,339 - 8,927,557 (-)	NCBI		Celera
Cytogenetic Map	14	p22	NCBI

MRPS18C
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	46,587,778 - 46,607,621 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	46,777,156 - 46,796,992 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	40,734,852 - 40,740,333 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	46,580,220 - 46,586,823 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	46,580,225 - 46,586,823 (-)	Ensembl	panpan1.1		panPan2

MRPS18C
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	32	7,290,554 - 7,295,342 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	32	7,290,584 - 7,298,989 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	32	34,590,214 - 34,595,093 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	32	7,312,132 - 7,316,849 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	32	7,312,119 - 7,316,849 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	32	7,382,322 - 7,387,107 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	32	7,251,787 - 7,256,576 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	32	32,705,130 - 32,710,013 (-)	NCBI		UU_Cfam_GSD_1.0

Mrps18c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	5,033,401 - 5,062,174 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936738	1,216,237 - 1,224,009 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936738	1,219,210 - 1,223,991 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MRPS18C
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	135,015,413 - 135,026,064 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	135,019,702 - 135,026,719 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	144,316,519 - 144,322,536 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MRPS18C
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	31,847,043 - 31,852,309 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666037	10,442,566 - 10,448,041 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mrps18c
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624900	419,835 - 426,886 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005401385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013502756	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01054466	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01054467	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01002268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005401385 ⟹ XP_005401442

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955474	6,274,545 - 6,280,857 (-)	NCBI

Sequence:

show sequence

TTTAGAGAAAGGAAAGGAAGAGGAGGGACGGGAAATCATGGCTGCTGTGGTCGTCGGCTGCAGC
GGTCTAGGGAGGAAGAAGTTGACACCCTGGATAACGGCTGCTGTCTGCCTCACATATCCCGGAA
CTCAAACGGTGCTATGGAGGAGAGGTTGTTCACAGTATAAACAGGTAACCAGCAATGAAAACAT
GCCTGTTGCAATGGAAAACCCTTATAAGGAACCTCTCAAGAAGTGTATCTTGTGTGGGAAACGT
GTGGATTATAAGAATGTGCAGCTTTTATCCCAGTTTATTTCTCCATATACTGGCTGCATTCATG
GGAGGCATATAACAGGTCTTTGTGGGAAGAAACAGAAAGAAATATCAAAAGCGATTAAGAGAGC
TCAAATAATGGGGTTTATGCCAGTTATGTACAAGGATCCTGCATATCTCAAAGACCCTAAAGTT
TGCAACATCAGATACCGGGAATAAATTTGAGAAAGTTATTACCAATAAACTCACTTTATAGTAA
GTGGTTGTATGCCATGACTGCACCATACTAACCTCTGGGTAGAAAAGTGTGTGAAGACCCAGGC
TCCCCCTCCCCCATGCCCCTGGATGTTCAGCAAATAGATTGTGCACCTGAAATGCTGGTACTCG
TCACATTGTATATGCCTTGAATAAAAGTGGTCCTGAATGATTGTCCCA

hide sequence

RefSeq Acc Id:

XM_013502756 ⟹ XP_013358210

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955474	6,274,925 - 6,280,871 (-)	NCBI

Sequence:

show sequence

ACCCATCGGGAGGCTTTAGAGAAAGGAAAGGAAGAGGAGGGACGGGAAATCATGGCTGCTGTGG
TCGTCGGCTGCAGCGGTCTAGGGAGGAAGAAGTTGACACCCTGGATAACGGCTGCTGTCTGCCT
CACATATCCCGGAACTCAAACGGTGCTATGGAGGAGAGGTTGTTCACAGTATAAACAGGTAACC
AGCAATGAAAACATGCCTGTTGCAATGGAAAACCCTTATAAGGAACCTCTCAAGAAGTGTATCT
TGTGTGGGAAACGTGTGGATTATAAGAATGTGCAGGTCTTTGTGGGAAGAAACAGAAAGAAATA
TCAAAAGCGATTAAGAGAGCTCAAATAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005401442	(Get FASTA)	NCBI Sequence Viewer
	XP_013358210	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000011895
	ENSCLAP00000011895.1

RefSeq Acc Id:	XP_005401442 ⟸ XM_005401385
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2VFC5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAVVVGCSGLGRKKLTPWITAAVCLTYPGTQTVLWRRGCSQYKQVTSNENMPVAMENPYKEPL KKCILCGKRVDYKNVQLLSQFISPYTGCIHGRHITGLCGKKQKEISKAIKRAQIMGFMPVMYKD PAYLKDPKVCNIRYRE hide sequence

RefSeq Acc Id:	XP_013358210 ⟸ XM_013502756
- Peptide Label:	isoform X2
- Sequence:	show sequence MAAVVVGCSGLGRKKLTPWITAAVCLTYPGTQTVLWRRGCSQYKQVTSNENMPVAMENPYKEPL KKCILCGKRVDYKNVQVFVGRNRKKYQKRLRELK hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000008205	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000012034	ENTREZGENE
	ENSCLAT00000012034.1	UniProtKB/TrEMBL
Gene3D-CATH	4.10.640.10	UniProtKB/TrEMBL
InterPro	Ribosomal_S18	UniProtKB/TrEMBL
	Ribosomal_S18_CS	UniProtKB/TrEMBL
	Ribosomal_S18_sf	UniProtKB/TrEMBL
NCBI Gene	Mrps18c	ENTREZGENE
PANTHER	28S RIBOSOMAL PROTEIN S18C, MITOCHONDRIAL	UniProtKB/TrEMBL
	PTHR13479	UniProtKB/TrEMBL
Pfam	Ribosomal_S18	UniProtKB/TrEMBL
PRINTS	RIBOSOMALS18	UniProtKB/TrEMBL
PROSITE	RIBOSOMAL_S18	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46911	UniProtKB/TrEMBL
UniProt	A0A8C2VFC5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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