MRPS18C (mitochondrial ribosomal protein S18C) - Rat Genome Database

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Gene: MRPS18C (mitochondrial ribosomal protein S18C) Chlorocebus sabaeus
Analyze
Symbol: MRPS18C
Name: mitochondrial ribosomal protein S18C
RGD ID: 18706003
Description: ASSOCIATED WITH chromosome 4q21 deletion syndrome (ortholog); FOUND IN mitochondrial small ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 28S ribosomal protein S18c, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1731,847,043 - 31,852,309 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603710,442,566 - 10,448,041 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MRPS18C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1731,847,043 - 31,852,309 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603710,442,566 - 10,448,041 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MRPS18C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38483,456,058 - 83,462,298 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl483,455,932 - 83,469,735 (+)EnsemblGRCh38hg38GRCh38
GRCh37484,377,211 - 84,383,451 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36484,596,196 - 84,601,900 (+)NCBINCBI36Build 36hg18NCBI36
Build 34484,734,350 - 84,740,055NCBI
Celera481,667,571 - 81,673,381 (+)NCBICelera
Cytogenetic Map4q21.23NCBI
HuRef480,119,893 - 80,125,705 (+)NCBIHuRef
CHM1_1484,353,692 - 84,359,503 (+)NCBICHM1_1
T2T-CHM13v2.0486,786,125 - 86,792,364 (+)NCBIT2T-CHM13v2.0
Mrps18c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395100,946,625 - 100,952,333 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5100,946,493 - 100,952,337 (+)EnsemblGRCm39 Ensembl
GRCm385100,798,759 - 100,804,467 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5100,798,627 - 100,804,471 (+)EnsemblGRCm38mm10GRCm38
MGSCv375101,227,778 - 101,233,486 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365101,039,061 - 101,044,769 (+)NCBIMGSCv36mm8
Celera598,126,835 - 98,132,542 (+)NCBICelera
Cytogenetic Map5E4NCBI
cM Map548.52NCBI
Mrps18c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8149,116,688 - 9,122,943 (-)NCBIGRCr8
mRatBN7.2148,812,301 - 8,818,538 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl148,791,330 - 8,818,516 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx148,780,210 - 8,786,437 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01410,080,058 - 10,086,285 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0148,776,671 - 8,782,898 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01410,440,691 - 10,446,909 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1410,440,691 - 10,446,909 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01410,388,657 - 10,394,875 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41410,096,209 - 10,102,427 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11410,096,518 - 10,102,420 (-)NCBI
Celera148,921,339 - 8,927,557 (-)NCBICelera
Cytogenetic Map14p22NCBI
Mrps18c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554746,274,545 - 6,280,871 (-)NCBIChiLan1.0ChiLan1.0
MRPS18C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2346,587,778 - 46,607,621 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1446,777,156 - 46,796,992 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0440,734,852 - 40,740,333 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1446,580,220 - 46,586,823 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl446,580,225 - 46,586,823 (-)Ensemblpanpan1.1panPan2
MRPS18C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1327,290,554 - 7,295,342 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl327,290,584 - 7,298,989 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3234,590,214 - 34,595,093 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0327,312,132 - 7,316,849 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl327,312,119 - 7,316,849 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1327,382,322 - 7,387,107 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0327,251,787 - 7,256,576 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03232,705,130 - 32,710,013 (-)NCBIUU_Cfam_GSD_1.0
Mrps18c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244052855,033,401 - 5,062,174 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367381,216,237 - 1,224,009 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367381,219,210 - 1,223,991 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPS18C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8135,015,413 - 135,026,064 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18135,019,702 - 135,026,719 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28144,316,519 - 144,322,536 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Mrps18c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624900419,835 - 426,886 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007999107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_007999107   ⟹   XP_007997298
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1731,847,043 - 31,852,309 (+)NCBI
Vero_WHO_p1.0NW_02366603710,442,566 - 10,448,041 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007997298 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_007997298   ⟸   XM_007999107


Additional Information

Database Acc Id Source(s)
NCBI Gene MRPS18C ENTREZGENE