Zbtb16 (zinc finger and BTB domain containing 16) - Rat Genome Database

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Gene: Zbtb16 (zinc finger and BTB domain containing 16) Chinchilla lanigera
Analyze
Symbol: Zbtb16
Name: zinc finger and BTB domain containing 16
RGD ID: 8734997
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); cartilage development (ortholog); cell population proliferation (ortholog); PARTICIPATES IN angiotensin II signaling pathway via AT2 receptor; ASSOCIATED WITH acute promyelocytic leukemia (ortholog); caudal regression syndrome (ortholog); Chromosome 11, Partial Trisomy 11q (ortholog); FOUND IN male germ cell nucleus (ortholog); nuclear body (ortholog); nuclear speck (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger and BTB domain-containing protein 16
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541215,668,332 - 15,845,372 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541215,668,332 - 15,845,384 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Zbtb16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541215,668,332 - 15,845,372 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541215,668,332 - 15,845,384 (+)NCBIChiLan1.0ChiLan1.0
ZBTB16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811114,059,711 - 114,256,770 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11114,059,041 - 114,256,765 (+)EnsemblGRCh38hg38GRCh38
GRCh3711113,930,433 - 114,127,492 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611113,435,641 - 113,626,608 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411113,435,658 - 113,626,568NCBI
Celera11111,083,317 - 111,274,300 (+)NCBICelera
Cytogenetic Map11q23.2NCBI
HuRef11109,859,046 - 110,049,950 (+)NCBIHuRef
CHM1_111113,814,520 - 114,005,500 (+)NCBICHM1_1
T2T-CHM13v2.011114,070,066 - 114,267,135 (+)NCBIT2T-CHM13v2.0
Zbtb16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39948,563,097 - 48,747,525 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl948,565,597 - 48,747,522 (-)EnsemblGRCm39 Ensembl
GRCm38948,651,797 - 48,836,225 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl948,654,297 - 48,836,222 (-)EnsemblGRCm38mm10GRCm38
MGSCv37948,462,402 - 48,644,050 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36948,406,264 - 48,587,864 (-)NCBIMGSCv36mm8
Celera945,948,793 - 46,132,024 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map926.47NCBI
Zbtb16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8857,885,886 - 58,073,507 (-)NCBIGRCr8
mRatBN7.2848,989,376 - 49,177,011 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl848,994,566 - 49,177,011 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx854,500,313 - 54,682,843 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0852,779,162 - 52,961,700 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0850,643,426 - 50,825,960 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0852,980,226 - 53,146,765 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl852,985,313 - 53,146,953 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0851,573,252 - 51,740,759 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4851,931,530 - 52,094,813 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1852,110,091 - 52,110,396 (-)NCBI
Celera848,553,034 - 48,734,595 (-)NCBICelera
Cytogenetic Map8q23NCBI
ZBTB16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29114,803,098 - 114,998,525 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111115,897,024 - 116,092,398 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011108,938,414 - 109,133,819 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111112,780,446 - 112,977,164 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11112,780,380 - 112,977,164 (+)Ensemblpanpan1.1panPan2
ZBTB16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1519,082,594 - 19,284,360 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl519,087,154 - 19,267,628 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha519,007,960 - 19,195,854 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0519,104,312 - 19,292,747 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl519,106,853 - 19,291,539 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1519,168,970 - 19,356,857 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0519,070,647 - 19,258,747 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0519,117,162 - 19,305,163 (-)NCBIUU_Cfam_GSD_1.0
Zbtb16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494796,135,014 - 96,315,732 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936612395,177 - 570,595 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936612389,877 - 570,595 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl941,639,701 - 41,836,742 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1941,639,536 - 41,839,254 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2946,454,490 - 46,459,483 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZBTB16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11105,446,067 - 105,648,771 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1105,449,994 - 105,643,344 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604320,384,628 - 20,582,116 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbtb16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247849,546,509 - 9,726,960 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247849,545,529 - 9,726,960 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000021855   ⟹   ENSCLAP00000021652
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541215,668,332 - 15,845,372 (+)Ensembl
RefSeq Acc Id: XM_005378153   ⟹   XP_005378210
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541215,668,332 - 15,845,384 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005378154   ⟹   XP_005378211
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541215,668,884 - 15,845,384 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005378155   ⟹   XP_005378212
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541215,668,649 - 15,845,384 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005378156   ⟹   XP_005378213
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541215,669,508 - 15,845,384 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005378210 (Get FASTA)   NCBI Sequence Viewer  
  XP_005378211 (Get FASTA)   NCBI Sequence Viewer  
  XP_005378212 (Get FASTA)   NCBI Sequence Viewer  
  XP_005378213 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000021652
  ENSCLAP00000021652.1
Reference Protein Sequences
RefSeq Acc Id: XP_005378210   ⟸   XM_005378153
- UniProtKB: A0A8C2VWU9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005378212   ⟸   XM_005378155
- UniProtKB: A0A8C2VWU9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005378211   ⟸   XM_005378154
- UniProtKB: A0A8C2VWU9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005378213   ⟸   XM_005378156
- UniProtKB: A0A8C2VWU9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000021652   ⟸   ENSCLAT00000021855
Protein Domains
BTB   C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014819 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000021855 ENTREZGENE
  ENSCLAT00000021855.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Zbtb16 ENTREZGENE
PANTHER FINGER PROTEIN, PUTATIVE-RELATED UniProtKB/TrEMBL
  PR DOMAIN ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8C2VWU9 ENTREZGENE, UniProtKB/TrEMBL