Otor (otoraplin) - Rat Genome Database

Name: Otor
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Otor (otoraplin) Chinchilla lanigera

Analyze

Symbol:

Otor

Name:

otoraplin

RGD ID:

8732125

Description:

INVOLVED IN cartilage condensation (ortholog); ASSOCIATED WITH genetic disease (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	OTOR (otoraplin)	NCBI	Ortholog
Mus musculus (house mouse):	Otor (otoraplin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Otor (otoraplin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	OTOR (otoraplin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	OTOR (otoraplin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Otor (otoraplin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	OTOR (otoraplin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	OTOR (otoraplin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Otor (otoraplin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	25,897,320 - 25,901,059 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	25,897,320 - 25,901,059 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cartilage condensation (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Otor
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	25,897,320 - 25,901,059 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	25,897,320 - 25,901,059 (+)	NCBI	ChiLan1.0	ChiLan1.0

OTOR
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	16,748,358 - 16,752,164 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	16,748,358 - 16,770,062 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	16,729,003 - 16,732,809 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	16,677,003 - 16,680,809 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	16,677,002 - 16,680,809	NCBI
Celera	20	16,804,076 - 16,807,889 (+)	NCBI		Celera
Cytogenetic Map	20	p12.1	NCBI
HuRef	20	16,691,848 - 16,695,666 (+)	NCBI		HuRef
CHM1_1	20	16,729,013 - 16,732,824 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	16,799,479 - 16,803,287 (+)	NCBI		T2T-CHM13v2.0

Otor
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	142,920,313 - 142,923,633 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	142,920,393 - 142,923,633 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	143,078,393 - 143,081,713 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	143,078,473 - 143,081,713 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	142,904,228 - 142,907,436 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	142,769,933 - 142,773,141 (+)	NCBI		MGSCv36	mm8
Celera	2	144,253,506 - 144,256,709 (+)	NCBI		Celera
Cytogenetic Map	2	G1	NCBI
cM Map	2	70.89	NCBI

Otor
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	150,868,886 - 150,872,141 (+)	NCBI		GRCr8
mRatBN7.2	3	130,415,339 - 130,418,601 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	130,415,339 - 130,418,601 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	134,321,343 - 134,324,604 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	142,905,383 - 142,908,644 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	140,608,550 - 140,611,812 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	137,154,086 - 137,157,341 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	137,154,086 - 137,157,341 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	143,596,458 - 143,599,713 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	131,432,572 - 131,435,827 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	131,338,161 - 131,419,405 (+)	NCBI
Celera	3	129,337,118 - 129,340,373 (+)	NCBI		Celera
Cytogenetic Map	3	q41	NCBI

OTOR
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	17,638,719 - 17,642,800 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	17,635,557 - 17,639,638 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	16,708,799 - 16,712,906 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	16,689,253 - 16,692,470 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	16,689,253 - 16,692,470 (+)	Ensembl	panpan1.1		panPan2

OTOR
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	6,095,781 - 6,099,583 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	6,096,412 - 6,099,285 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	5,962,455 - 5,966,546 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	6,502,291 - 6,506,381 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	6,502,737 - 6,505,834 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	6,111,419 - 6,115,509 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	6,207,791 - 6,211,883 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	6,484,138 - 6,488,229 (-)	NCBI		UU_Cfam_GSD_1.0

Otor
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	154,853,952 - 154,857,889 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936485	3,282,824 - 3,289,128 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936485	3,285,363 - 3,288,914 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

OTOR
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	17	25,380,179 - 25,383,521 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	28,639,994 - 28,643,375 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

OTOR
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	45,669,511 - 45,677,479 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	45,673,719 - 45,676,435 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666054	6,056,527 - 6,060,042 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Otor
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	17,908,579 - 17,911,354 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624741	17,904,923 - 17,912,124 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005380903	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01016587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCC01001217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000024446 ⟹ ENSCLAP00000024213

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955415	25,897,320 - 25,901,059 (+)	Ensembl

RefSeq Acc Id:

XM_005380903 ⟹ XP_005380960

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955415	25,897,320 - 25,901,059 (+)	NCBI

Sequence:

show sequence

GTCAAAGAGTGCCAGTCAGAACAGCAAGAATGAAAATGGCGAGAATATTGTTGCTTTTTCTCCT
GGGTCTCACGGGTGTATGTTCAGGGCACGGAGTATTTATGGATAGACTTGCTTCCAAGAAGCTA
TGTGCCGATGACGAGTGTGTCTATACTATTTCTCTGGCTAGAGCCCAAGAAGATTACAATGCCC
CAGACTGCAGATTCATTAACGTTAAAAAAGGGCAGCAGATCTACATTTACTCAAAGCTGGTAAA
AGAAAACGAAGCTGGAGAATTCTGGGCTGGCAGTGTTTATGGTGATCACCAGGCCGAGATGGGA
ATCGTGGGTTATTTCCCCAGCAGCTTGGTCAAGGAGCAACATGTGTACCAGGAAGCCACCAAGG
AAGTCCCCACAACGGATATTGACTTCTTCTGTGAATAAGAAATTAAACTGCAAGTAAAAGGAAA
ACACCAAAAATGAAGAAACACAAAACCACAACAGCCAAAAGTGCACTTATCTATTTTCTGGCTT
TTTGAAAAGAGCTTGTTACACTAGAGGAGAACTGGAGCTGGGGGCTGGAGGGAGTAGGAAGATG
ATTTTCAACTTTTTTTTCTACTGGCTTGGTCTTTCCACAGCTGGAGCAAGATGGTATTTGGCTT
ACACAAGTGAATTAAAACCAAAGTTATTTTTCAGCCTAAAGAATCTTTCTCTGCTTTGAGGATA
TGCACAGAAGATGGTTTATTACAGTTATTTCTACCTACTGATTCTTTGCAGATCTTTGACTCTC
CATATACTTACATGGTAGGTCAGAAATCTTATCTCTAGGAGTAATGTTTTTTAGTGATATGTAC
CTAAGTTAAGGGCTGGCTCATTAAGGAGAATTCTAGTAGTTTTTATTACTGTTTAACATTTGAA
ATTTGAATTTGAAGCTCTTATGAATTAAAATAAACCAGTTTTTTAGACGCATAAATGATGTGAC
TATGGCTTTGAATTTCTCTTTTTAAAAAATTTCACAAATTCTTTCAATTGAAAGATTTTGCTTC
TAAACAATCAACATGCCCCCTCATTAAATAAGCATGTAATGAATTAAGCTCCTTTCAATATGAA
CCCTCATTGGATGTTGTTCAAACTTCAAGTCATCAAAAGTCTGTGGCTTTTTTGCTCCACTTCT
ATCTCAACTTTTACTTTCTTCTTTCTATGAAAATTTTCTCTCAGCAGGTGTGATGTACTGGTAG
CAATAAATCTGATGAGAAAGTGCAGGTTTTGAGATCCCGGTGGGCCCATGAATTTTTCTCTATT
TAACTGGAAATCTGCATCGATTGTGTATTATTAATGTCATTCTTTTGGTGTACTCGTGAGTTTT
TGTTTGTTTACATGAAATTAAAACACCTGTACTGTGCTAAAAAGT

hide sequence

Protein Sequences


Protein RefSeqs	XP_005380960	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000024213
	ENSCLAP00000024213.1

RefSeq Acc Id:	XP_005380960 ⟸ XM_005380903
- UniProtKB:	A0A8C2W2I3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKMARILLLFLLGLTGVCSGHGVFMDRLASKKLCADDECVYTISLARAQEDYNAPDCRFINVKK GQQIYIYSKLVKENEAGEFWAGSVYGDHQAEMGIVGYFPSSLVKEQHVYQEATKEVPTTDIDFF CE hide sequence

RefSeq Acc Id:

ENSCLAP00000024213 ⟸ ENSCLAT00000024446

Protein Domains

SH3

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000016622	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000024446	ENTREZGENE
	ENSCLAT00000024446.1	UniProtKB/TrEMBL
Gene3D-CATH	SH3 Domains	UniProtKB/TrEMBL
InterPro	OTOR	UniProtKB/TrEMBL
	Otoraplin_SH3	UniProtKB/TrEMBL
	SH3-like_dom_sf	UniProtKB/TrEMBL
	SH3_domain	UniProtKB/TrEMBL
NCBI Gene	Otor	ENTREZGENE
PANTHER	OTORAPLIN	UniProtKB/TrEMBL
	PTHR47146	UniProtKB/TrEMBL
Pfam	SH3_2	UniProtKB/TrEMBL
PROSITE	SH3	UniProtKB/TrEMBL
SMART	SH3	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50044	UniProtKB/TrEMBL
UniProt	A0A8C2W2I3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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