OTOR (otoraplin) - Rat Genome Database

Name: OTOR
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: OTOR (otoraplin) Canis lupus familiaris

Analyze

Symbol:

OTOR

Name:

otoraplin

RGD ID:

12187937

Description:

INVOLVED IN cartilage condensation (ortholog); ASSOCIATED WITH familial hyperinsulinemic hypoglycemia 1 (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	OTOR (otoraplin)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Otor (otoraplin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Otor (otoraplin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Otor (otoraplin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	OTOR (otoraplin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Otor (otoraplin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	OTOR (otoraplin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	OTOR (otoraplin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Otor (otoraplin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	6,095,781 - 6,099,583 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	6,096,412 - 6,099,285 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	5,962,455 - 5,966,546 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	6,502,291 - 6,506,381 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	6,502,737 - 6,505,834 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	6,111,419 - 6,115,509 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	6,207,791 - 6,211,883 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	6,484,138 - 6,488,229 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

familial hyperinsulinemic hypoglycemia 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cartilage condensation (IEA,ISO)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

OTOR
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	6,095,781 - 6,099,583 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	6,096,412 - 6,099,285 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	5,962,455 - 5,966,546 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	6,502,291 - 6,506,381 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	6,502,737 - 6,505,834 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	6,111,419 - 6,115,509 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	6,207,791 - 6,211,883 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	6,484,138 - 6,488,229 (-)	NCBI		UU_Cfam_GSD_1.0

OTOR
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	16,748,358 - 16,752,164 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	16,748,358 - 16,770,062 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	16,729,003 - 16,732,809 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	16,677,003 - 16,680,809 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	16,677,002 - 16,680,809	NCBI
Celera	20	16,804,076 - 16,807,889 (+)	NCBI		Celera
Cytogenetic Map	20	p12.1	NCBI
HuRef	20	16,691,848 - 16,695,666 (+)	NCBI		HuRef
CHM1_1	20	16,729,013 - 16,732,824 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	16,799,479 - 16,803,287 (+)	NCBI		T2T-CHM13v2.0

Otor
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	142,920,313 - 142,923,633 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	142,920,393 - 142,923,633 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	143,078,393 - 143,081,713 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	143,078,473 - 143,081,713 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	142,904,228 - 142,907,436 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	142,769,933 - 142,773,141 (+)	NCBI		MGSCv36	mm8
Celera	2	144,253,506 - 144,256,709 (+)	NCBI		Celera
Cytogenetic Map	2	G1	NCBI
cM Map	2	70.89	NCBI

Otor
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	150,868,886 - 150,872,141 (+)	NCBI		GRCr8
mRatBN7.2	3	130,415,339 - 130,418,601 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	130,415,339 - 130,418,601 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	134,321,343 - 134,324,604 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	142,905,383 - 142,908,644 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	140,608,550 - 140,611,812 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	137,154,086 - 137,157,341 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	137,154,086 - 137,157,341 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	143,596,458 - 143,599,713 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	131,432,572 - 131,435,827 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	131,338,161 - 131,419,405 (+)	NCBI
Celera	3	129,337,118 - 129,340,373 (+)	NCBI		Celera
Cytogenetic Map	3	q41	NCBI

Otor
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	25,897,320 - 25,901,059 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	25,897,320 - 25,901,059 (+)	NCBI	ChiLan1.0	ChiLan1.0

OTOR
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	17,638,719 - 17,642,800 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	17,635,557 - 17,639,638 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	16,708,799 - 16,712,906 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	16,689,253 - 16,692,470 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	16,689,253 - 16,692,470 (+)	Ensembl	panpan1.1		panPan2

Otor
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	154,853,952 - 154,857,889 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936485	3,282,824 - 3,289,128 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936485	3,285,363 - 3,288,914 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

OTOR
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	17	25,380,179 - 25,383,521 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	28,639,994 - 28,643,375 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

OTOR
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	45,669,511 - 45,677,479 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	45,673,719 - 45,676,435 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666054	6,056,527 - 6,060,042 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Otor
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	17,908,579 - 17,911,354 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624741	17,904,923 - 17,912,124 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in OTOR
30 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium
Low			4						4
Below cutoff	4	5	14	3	6	3	6	3	8	8	10	6

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003639837	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022409331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038432852	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038432853	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038509618	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038509619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038571360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038571361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038635555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038635557	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000044148 ⟹ ENSCAFP00000039726

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	24	6,096,412 - 6,099,285 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000068789 ⟹ ENSCAFP00000064227

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	24	6,097,136 - 6,099,285 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845034298 ⟹ ENSCAFP00845026847

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	24	6,502,737 - 6,505,834 (-)	Ensembl

RefSeq Acc Id:

XM_003639837 ⟹ XP_003639885

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	24	6,096,551 - 6,099,568 (-)	NCBI
Dog10K_Boxer_Tasha	24	5,963,460 - 5,966,436 (-)	NCBI

Sequence:

show sequence

GCAAAAATGCCACAGCTGAAGTGGCTTTACCAGTGGTGGGCTGTCTTGGATATCATTTGTGTTT
TAAAAAAAAGACACTGAGTTTGAGTCTCCTTGGAAAAACAGATGCAAATTAGCCCCTGGAGCCC
AGCAGCTGTTATGAAAGCAGAGGACTGGTGGGCTCCTTCCCATTGGCTGGGGGGATTTACCCAG
ATGTCTGGCTTCCACATAAAAGATAGGAACCACTGCAGTCAGTTTCCACTTCCAGTTAAAGGAC
GACAGCAAAAACAGCAAAAAAAGGAAGATGGCCAGACTATTATTACTTTTCCTCCCAGGTCTTG
TGGCCATATGTGCCGTGTGTGGAATATTTATGGACAAACTTGCTTCCAAGAAGCTCTGTGCAGA
TGATGAGTGCGTGTATACTATTTCTCTGGCCAGAGCTCAAGAAGATTACAATGCCCCAGACTGT
AGGTTCATTAATGTGAAAAAAGGACAGCAGATTTACGTTTACTCGAAGCTGGTAAAAGAAAATG
GAGCTGGAGAATTTTGGGCTGGCAGTGTTTATGGAGATGACCACGAGGATGAGATGGGAACCGT
GGGCTATTTCCCCAGCAGCTTGGTGGAGGAGCAACACGTGTACCAAGAAGCCACCAAGGAAGTC
CCCACTACGGACATTGACTTCTTCTGTGAGTAAGAAATTAGACAAACCTGCAAATAGAAAGGAA
AAACTAAAAAGAAAAAAAAAAGTCCCTAATTCCTGACTTTTGTTTCAAGGCTGTGTTACCTTAC
AGGCCGGCTGGGCCTTCAGCGCCAGAGGTGGCAGATGACAGAGGGGGTTCCACTCAGTTTTCTG
CTGGCCTGGTCTTCCCACCACCTGGGCAGGGTGACGTTCAACTCAAGTGGGAGAACTGAAAGCA
GAAATTAT

hide sequence

RefSeq Acc Id:

XM_022409331 ⟹ XP_022265039

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	24	6,095,781 - 6,099,583 (-)	NCBI
Dog10K_Boxer_Tasha	24	5,962,455 - 5,966,546 (-)	NCBI

Sequence:

show sequence

CAATGCCCTGCTAGTGCAAAAATGCCACAGCTGAAGTGGCTTTACCAGTGGTGGGCTGTCTTGG
ATATCATTTGTGTTTTAAAAAAAAGACACTGAGTTTGAGTCTCCTTGGAAAAACAGATGCAAAT
TAGCCCCTGGAGCCCAGCAGCTGTTATGAAAGCAGAGGACTGGTGGGCTCCTTCCCATTGGCTG
GGGGGATTTACCCAGATGTCTGGCTTCCACATAAAAGATAGGAACCACTGCAGTCAGTTTCCAC
TTCCAGTTAAAGGACGACAGCAAAAACAGCAAAAAAAGGAAGATGGCCAGACTATTATTACTTT
TCCTCCCAGGTCTTGTGGCCATATGTGCCGTGTGTGGAATATTTATGGACAAACTTGCTTCCAA
GAAGCTCTGTGCAGATGATGAGTGCGTGTATACTATTTCTCTGGCCAGAGCTCAAGAAGATTAC
AATGCCCCAGACTGTAGGTTCATTAATGTGAAAAAAGGACAGCAGATTTACGTTTACTCGAAGC
TGGTAAAAGAAAATGGAGCTGGAGAATTTTGGGCTGGCAGTGTTTATGGAGATGACCACGAGGA
TGAGATGGGAACCGTGGGCTATTTCCCCAGCAGCTTGGTGGAGGAGCAACACGTGTACCAAGAA
GCCACCAAGGAAGTCCCCACTACGGACATTGACTTCTTCTGCCGGCTGGGCCTTCAGCGCCAGA
GGTGGCAGATGACAGAGGGGGTTCCACTCAGTTTTCTGCTGGCCTGGTCTTCCCACCACCTGGG
CAGGGTGACGTTCAACTCAAGTGGGAGAACTGAAAGCAGAAATTATGTTTCAGCCTAGAGAATC
TTCTCTTCCACAGGGCTGCATACAGATGATAGTACAGTTGTGTGACTTCTAAATCGTTCTTGCC
AGCTCTTTGGCTCTTTATACAAACTTGGTAGGTCACAGGTCTTCCCTTTGGACATGCTGTTTTG
TAATTATTTGTCTCACTGGCCATTTGGAGTGTTATAATGTACCCAAAGGGGCTAAATCCTCAAG
GAGTACTCTAGGATTGTTGTTACTTTTAATATTTGATGCCTTTGGGTTGTGAAACTAGTGGGAG
TAGAGGAGCTCTTTGGACTCATAGATATTTAGACTATGCCTTTTGTTTTTAAAAATAAATCACA
AATTATTTCAATTGAAATTTATCTTCTAATGACCAATTTACCTCTCCCCAAATTTTAAATATGT
GTGTATGTAATAAGGATGGAGCAGCTTATGAAATATTTGTAATGGAATAGTTCCCCCTTCATAT
GTGCTGTTACTGCAAACATTCGAGCTTCAAGTTCAAAGACTAGGTGTGGGGGGTAGCACAGAAA
GTCTATGGGTTGTTTCTCTACTTCTCTTTCAACTTTGAATATCCTCTTCCTGTGCAAATTCCCC
CAGTCAAGGATAATGTGTGAAGCAATCTGGTAAGGGGATTGGTGGTCCCAATGGATGTATAAAT
TTTTCTACATTTAATTGGATATTTGCTTTGACTGTGTATTCCTCGTATAATTCTTTTTATGTAG
TCATGAGTCTTTGTTTACATGTAATTAAAATGCCTATGCTCAAAACAA

hide sequence

RefSeq Acc Id:

XM_038432852 ⟹ XP_038288780

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	24	6,502,291 - 6,506,381 (-)	NCBI

RefSeq Acc Id:

XM_038432853 ⟹ XP_038288781

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	24	6,503,296 - 6,506,271 (-)	NCBI

RefSeq Acc Id:

XM_038509618 ⟹ XP_038365546

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	24	6,111,419 - 6,115,509 (-)	NCBI

RefSeq Acc Id:

XM_038509619 ⟹ XP_038365547

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	24	6,112,424 - 6,115,399 (-)	NCBI

RefSeq Acc Id:

XM_038571360 ⟹ XP_038427288

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	24	6,484,138 - 6,488,229 (-)	NCBI

RefSeq Acc Id:

XM_038571361 ⟹ XP_038427289

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	24	6,485,143 - 6,488,119 (-)	NCBI

RefSeq Acc Id:

XM_038635555 ⟹ XP_038491483

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	24	6,207,791 - 6,211,883 (-)	NCBI

RefSeq Acc Id:

XM_038635557 ⟹ XP_038491485

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	24	6,208,796 - 6,211,773 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_003639885	(Get FASTA)	NCBI Sequence Viewer
	XP_022265039	(Get FASTA)	NCBI Sequence Viewer
	XP_038288780	(Get FASTA)	NCBI Sequence Viewer
	XP_038288781	(Get FASTA)	NCBI Sequence Viewer
	XP_038365546	(Get FASTA)	NCBI Sequence Viewer
	XP_038365547	(Get FASTA)	NCBI Sequence Viewer
	XP_038427288	(Get FASTA)	NCBI Sequence Viewer
	XP_038427289	(Get FASTA)	NCBI Sequence Viewer
	XP_038491483	(Get FASTA)	NCBI Sequence Viewer
	XP_038491485	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000039726.3
	ENSCAFP00030040546.1
	ENSCAFP00040008177.1
	ENSCAFP00040008194.1
	ENSCAFP00845026847
	ENSCAFP00845026847.1

RefSeq Acc Id:	XP_003639885 ⟸ XM_003639837
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0LZ94 (UniProtKB/TrEMBL), A0A8C0RT94 (UniProtKB/TrEMBL), A0A8I3P5B5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MARLLLLFLPGLVAICAVCGIFMDKLASKKLCADDECVYTISLARAQEDYNAPDCRFINVKKGQ QIYVYSKLVKENGAGEFWAGSVYGDDHEDEMGTVGYFPSSLVEEQHVYQEATKEVPTTDIDFFC E hide sequence

RefSeq Acc Id:	XP_022265039 ⟸ XM_022409331
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0QJF7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MARLLLLFLPGLVAICAVCGIFMDKLASKKLCADDECVYTISLARAQEDYNAPDCRFINVKKGQ QIYVYSKLVKENGAGEFWAGSVYGDDHEDEMGTVGYFPSSLVEEQHVYQEATKEVPTTDIDFFC RLGLQRQRWQMTEGVPLSFLLAWSSHHLGRVTFNSSGRTESRNYVSA hide sequence

RefSeq Acc Id:

ENSCAFP00000039726 ⟸ ENSCAFT00000044148

RefSeq Acc Id:

ENSCAFP00000064227 ⟸ ENSCAFT00000068789

RefSeq Acc Id:	XP_038365546 ⟸ XM_038509618
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038365547 ⟸ XM_038509619
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038491483 ⟸ XM_038635555
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038491485 ⟸ XM_038635557
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038288780 ⟸ XM_038432852
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0QJF7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038288781 ⟸ XM_038432853
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0LZ94 (UniProtKB/TrEMBL), A0A8C0RT94 (UniProtKB/TrEMBL), A0A8I3P5B5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038427288 ⟸ XM_038571360
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0QJF7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038427289 ⟸ XM_038571361
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0LZ94 (UniProtKB/TrEMBL), A0A8C0RT94 (UniProtKB/TrEMBL), A0A8I3P5B5 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845026847 ⟸ ENSCAFT00845034298

Protein Domains

SH3

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000030197	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030025137	UniProtKB/TrEMBL
	ENSCAFG00040005029	UniProtKB/TrEMBL
	ENSCAFG00845019434	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000044148.3	UniProtKB/TrEMBL
	ENSCAFT00030046394.1	UniProtKB/TrEMBL
	ENSCAFT00040009437.1	UniProtKB/TrEMBL
	ENSCAFT00040009456.1	UniProtKB/TrEMBL
	ENSCAFT00845034298	ENTREZGENE
	ENSCAFT00845034298.1	UniProtKB/TrEMBL
Gene3D-CATH	SH3 Domains	UniProtKB/TrEMBL
InterPro	OTOR	UniProtKB/TrEMBL
	Otoraplin_SH3	UniProtKB/TrEMBL
	SH3-like_dom_sf	UniProtKB/TrEMBL
	SH3_domain	UniProtKB/TrEMBL
KEGG Report	cfa:100856431	UniProtKB/TrEMBL
NCBI Gene	OTOR	ENTREZGENE
PANTHER	OTORAPLIN	UniProtKB/TrEMBL
	PTHR47146	UniProtKB/TrEMBL
Pfam	SH3_2	UniProtKB/TrEMBL
PROSITE	SH3	UniProtKB/TrEMBL
SMART	SH3	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50044	UniProtKB/TrEMBL
UniProt	A0A8C0LZ94	ENTREZGENE
	A0A8C0Q3U7_CANLF	UniProtKB/TrEMBL
	A0A8C0QJF7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0RT94	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3P5B5	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:54722	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar