Dohh (deoxyhypusine hydroxylase) - Rat Genome Database

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Gene: Dohh (deoxyhypusine hydroxylase) Chinchilla lanigera
Analyze
Symbol: Dohh
Name: deoxyhypusine hydroxylase
RGD ID: 8717985
Description: ENCODES a protein that exhibits deoxyhypusine monooxygenase activity (ortholog); iron ion binding (ortholog); ASSOCIATED WITH Neurodevelopmental Disorder with Microcephaly, Cerebral Atrophy, and Visual Impairment (ortholog); Neurodevelopmental Disorders (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: deoxyhypusine hydroxylase/monooxygenase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554955,076,705 - 5,079,798 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554955,073,794 - 5,080,298 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Dohh
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554955,076,705 - 5,079,798 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554955,073,794 - 5,080,298 (+)NCBIChiLan1.0ChiLan1.0
DOHH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38193,490,824 - 3,500,674 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl193,490,821 - 3,500,674 (-)EnsemblGRCh38hg38GRCh38
GRCh37193,490,822 - 3,500,672 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36193,441,822 - 3,451,621 (-)NCBINCBI36Build 36hg18NCBI36
Celera193,427,630 - 3,437,748 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef193,256,753 - 3,266,895 (-)NCBIHuRef
CHM1_1193,490,467 - 3,500,586 (-)NCBICHM1_1
T2T-CHM13v2.0193,468,995 - 3,478,845 (-)NCBIT2T-CHM13v2.0
Dohh
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391081,220,268 - 81,224,186 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1081,220,262 - 81,224,186 (+)EnsemblGRCm39 Ensembl
GRCm381081,384,434 - 81,388,352 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1081,384,466 - 81,391,560 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1081,384,428 - 81,388,352 (+)EnsemblGRCm38mm10GRCm38
MGSCv371080,847,173 - 80,851,097 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361080,787,640 - 80,791,481 (+)NCBIMGSCv36mm8
Celera1082,405,461 - 82,409,385 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Dohh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr878,972,202 - 8,977,025 (-)NCBIGRCr8
mRatBN7.278,321,466 - 8,326,305 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl78,321,466 - 8,326,289 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx711,207,123 - 11,211,953 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0713,082,610 - 13,087,440 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0710,950,258 - 10,955,089 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0711,191,127 - 11,195,971 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl711,191,131 - 11,195,866 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0711,358,019 - 11,362,858 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.479,806,005 - 9,810,744 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.179,806,004 - 9,810,744 (-)NCBI
Celera76,510,531 - 6,515,270 (-)NCBICelera
Cytogenetic Map7q11NCBI
DOHH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2207,889,743 - 7,904,833 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1197,121,358 - 7,136,433 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0192,517,866 - 2,527,786 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1193,467,563 - 3,478,128 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl193,468,094 - 3,474,038 (-)Ensemblpanpan1.1panPan2
DOHH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12055,896,919 - 55,906,326 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2055,897,382 - 55,906,357 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2055,621,579 - 55,630,779 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02056,556,150 - 56,565,298 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2056,553,980 - 56,565,072 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12055,611,838 - 55,621,208 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02056,095,360 - 56,104,503 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02056,294,230 - 56,303,377 (-)NCBIUU_Cfam_GSD_1.0
Dohh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118215,849,726 - 215,856,299 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365881,974,092 - 1,985,320 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365881,978,487 - 1,985,056 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DOHH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl275,164,787 - 75,173,439 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1275,164,536 - 75,173,443 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2275,730,711 - 75,739,634 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DOHH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.163,256,088 - 3,272,082 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl63,256,087 - 3,265,460 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660815,220,128 - 5,236,427 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dohh
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248285,875,797 - 5,884,360 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248285,876,034 - 5,882,342 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000011468   ⟹   ENSCLAP00000011331
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554955,076,705 - 5,079,798 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000011469   ⟹   ENSCLAP00000011332
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554955,076,705 - 5,079,372 (+)Ensembl
RefSeq Acc Id: XM_005405836   ⟹   XP_005405893
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554955,073,794 - 5,080,298 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013505247   ⟹   XP_013360701
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554955,073,847 - 5,080,298 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013505248   ⟹   XP_013360702
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554955,075,793 - 5,080,298 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005405893 (Get FASTA)   NCBI Sequence Viewer  
  XP_013360701 (Get FASTA)   NCBI Sequence Viewer  
  XP_013360702 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000011331
  ENSCLAP00000011331.1
  ENSCLAP00000011332.1
RefSeq Acc Id: XP_005405893   ⟸   XM_005405836
- UniProtKB: A0A8C2VDZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013360701   ⟸   XM_013505247
- UniProtKB: A0A8C2VDZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013360702   ⟸   XM_013505248
- UniProtKB: A0A8C2VDZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000011332   ⟸   ENSCLAT00000011469
RefSeq Acc Id: ENSCLAP00000011331   ⟸   ENSCLAT00000011468


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007817 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011468 ENTREZGENE
  ENSCLAT00000011468.1 UniProtKB/TrEMBL
  ENSCLAT00000011469.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Deoxyhypusine_hydroxylase UniProtKB/TrEMBL
  HEAT_type_2 UniProtKB/TrEMBL
  PBS_lyase_HEAT UniProtKB/TrEMBL
NCBI Gene Dohh ENTREZGENE
PANTHER DEOXYHYPUSINE HYDROXYLASE UniProtKB/TrEMBL
  PBS LYASE HEAT-LIKE PROTEIN UniProtKB/TrEMBL
Pfam HEAT_2 UniProtKB/TrEMBL
  HEAT_PBS UniProtKB/TrEMBL
PROSITE HEAT_REPEAT UniProtKB/TrEMBL
SMART EZ_HEAT UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A8C2V8M1_CHILA UniProtKB/TrEMBL
  A0A8C2VDZ0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-01-31 Dohh  deoxyhypusine hydroxylase    deoxyhypusine hydroxylase/monooxygenase  Symbol and/or name change 5135510 APPROVED