Vti1a (vesicle transport through interaction with t-SNAREs 1A) - Rat Genome Database

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Gene: Vti1a (vesicle transport through interaction with t-SNAREs 1A) Chinchilla lanigera
Analyze
Symbol: Vti1a
Name: vesicle transport through interaction with t-SNAREs 1A
RGD ID: 8710300
Description: ENCODES a protein that exhibits SNAP receptor activity (ortholog); INVOLVED IN autophagy (ortholog); endocytic recycling (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); Colorectal Neoplasms (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN autophagosome (ortholog); clathrin-coated vesicle (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: vesicle transport through interaction with t-SNAREs homolog 1A
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543117,542,979 - 17,919,191 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543117,542,605 - 17,910,809 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Vti1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543117,542,979 - 17,919,191 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543117,542,605 - 17,910,809 (+)NCBIChiLan1.0ChiLan1.0
VTI1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810112,446,988 - 112,855,368 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10112,446,998 - 112,818,744 (+)EnsemblGRCh38hg38GRCh38
GRCh3710114,206,746 - 114,615,127 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610114,196,746 - 114,568,493 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410114,197,005 - 114,487,522NCBI
Celera10107,934,279 - 108,306,193 (+)NCBICelera
Cytogenetic Map10q25.2NCBI
HuRef10107,834,405 - 108,205,925 (+)NCBIHuRef
CHM1_110114,488,406 - 114,860,295 (+)NCBICHM1_1
T2T-CHM13v2.010113,337,655 - 113,746,195 (+)NCBIT2T-CHM13v2.0
Vti1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391955,304,489 - 55,615,893 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1955,304,727 - 55,615,741 (+)EnsemblGRCm39 Ensembl
GRCm381955,316,030 - 55,627,461 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1955,316,295 - 55,627,309 (+)EnsemblGRCm38mm10GRCm38
MGSCv371955,390,841 - 55,701,051 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361955,369,601 - 55,679,811 (+)NCBIMGSCv36mm8
Celera1957,507,484 - 57,817,205 (+)NCBICelera
Cytogenetic Map19D2NCBI
cM Map1951.35NCBI
Vti1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81264,361,538 - 264,667,171 (+)NCBIGRCr8
mRatBN7.21254,356,343 - 254,661,854 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1254,356,429 - 254,661,852 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1262,561,531 - 262,865,459 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01269,267,611 - 269,571,543 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01261,915,213 - 262,220,349 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01276,310,072 - 276,508,635 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1276,309,927 - 276,490,602 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01283,705,427 - 283,902,980 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41261,664,003 - 261,905,744 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11261,875,047 - 262,116,789 (+)NCBI
Celera1250,063,252 - 250,364,895 (+)NCBICelera
Cytogenetic Map1q55NCBI
VTI1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28124,322,328 - 124,825,855 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110124,327,795 - 124,831,021 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010109,037,834 - 109,539,019 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110112,476,478 - 112,857,949 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10112,476,859 - 112,845,615 (+)Ensemblpanpan1.1panPan2
VTI1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12823,496,553 - 23,854,609 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2823,496,593 - 23,842,369 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2823,648,320 - 24,006,512 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02824,029,018 - 24,386,280 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2824,029,040 - 24,375,059 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12823,586,067 - 23,944,129 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02823,597,236 - 23,951,876 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02823,793,699 - 24,150,727 (+)NCBIUU_Cfam_GSD_1.0
Vti1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721322,089,354 - 22,551,182 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364863,010,490 - 3,347,424 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364863,010,169 - 3,353,512 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VTI1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14122,849,004 - 123,215,938 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114122,848,727 - 123,217,568 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214133,772,147 - 133,859,216 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VTI1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19105,330,089 - 105,828,029 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9105,330,143 - 105,695,049 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604866,533,145 - 67,038,520 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vti1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473733,664,093 - 34,020,863 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473733,601,794 - 34,020,779 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005387765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005387768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013515814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013515815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013515816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013515818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013515819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01030409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01030410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01030411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01030412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01030413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01030414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01030415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01030416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01030417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01030418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDF01220882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000014553   ⟹   ENSCLAP00000014395
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543117,542,979 - 17,919,191 (+)Ensembl
RefSeq Acc Id: XM_005387765   ⟹   XP_005387822
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543117,542,641 - 17,910,809 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005387768   ⟹   XP_005387825
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543117,542,646 - 17,907,455 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515814   ⟹   XP_013371268
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543117,542,618 - 17,910,809 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515815   ⟹   XP_013371269
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543117,542,605 - 17,765,759 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515816   ⟹   XP_013371270
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543117,542,613 - 17,767,939 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515818   ⟹   XP_013371272
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543117,542,618 - 17,907,455 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515819   ⟹   XP_013371273
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543117,542,617 - 17,765,759 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005387822   ⟸   XM_005387765
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VL11 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005387825   ⟸   XM_005387768
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_013371269   ⟸   XM_013515815
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013371270   ⟸   XM_013515816
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013371273   ⟸   XM_013515819
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013371268   ⟸   XM_013515814
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013371272   ⟸   XM_013515818
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSCLAP00000014395   ⟸   ENSCLAT00000014553
Protein Domains
t-SNARE coiled-coil homology


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009927 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000014553 ENTREZGENE
  ENSCLAT00000014553.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.110 UniProtKB/TrEMBL
  1.20.58.400 UniProtKB/TrEMBL
InterPro GOSR2/Membrin/Bos1 UniProtKB/TrEMBL
  SNARE UniProtKB/TrEMBL
  T_SNARE_dom UniProtKB/TrEMBL
  v-SNARE_N_sf UniProtKB/TrEMBL
  Vesicle_trsprt_v-SNARE_N UniProtKB/TrEMBL
NCBI Gene Vti1a ENTREZGENE
PANTHER VESICLE TRANSPORT THROUGH INTERACTION WITH T-SNARES HOMOLOG 1A UniProtKB/TrEMBL
  VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED UniProtKB/TrEMBL
Pfam V-SNARE UniProtKB/TrEMBL
  V-SNARE_C UniProtKB/TrEMBL
PIRSF Membrin-2 UniProtKB/TrEMBL
SMART t_SNARE UniProtKB/TrEMBL
Superfamily-SCOP SNARE fusion complex UniProtKB/TrEMBL
  SSF47661 UniProtKB/TrEMBL
UniProt A0A8C2VL11 ENTREZGENE, UniProtKB/TrEMBL