Vti1a (vesicle transport through interaction with t-SNAREs 1A) - Rat Genome Database

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Gene: Vti1a (vesicle transport through interaction with t-SNAREs 1A) Ictidomys tridecemlineatus
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Symbol: Vti1a
Name: vesicle transport through interaction with t-SNAREs 1A
RGD ID: 12543766
Description: ENCODES a protein that exhibits SNAP receptor activity (inferred); SNARE binding (inferred); INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); synaptic vesicle to endosome fusion (ortholog); vesicle fusion with Golgi apparatus (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); Colorectal Neoplasms (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN clathrin-coated vesicle (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog); neuron projection terminus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: vesicle transport through interaction with t-SNAREs 1A, transcript variant X1; vesicle transport through interaction with t-SNAREs 1A, transcript variant X2; vesicle transport through interaction with t-SNAREs homolog 1A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721322,089,354 - 22,551,182 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364863,010,490 - 3,347,424 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364863,010,169 - 3,353,512 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Vti1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721322,089,354 - 22,551,182 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364863,010,490 - 3,347,424 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364863,010,169 - 3,353,512 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VTI1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810112,446,988 - 112,855,368 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10112,446,998 - 112,818,744 (+)EnsemblGRCh38hg38GRCh38
GRCh3710114,206,746 - 114,615,127 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610114,196,746 - 114,568,493 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410114,197,005 - 114,487,522NCBI
Celera10107,934,279 - 108,306,193 (+)NCBICelera
Cytogenetic Map10q25.2NCBI
HuRef10107,834,405 - 108,205,925 (+)NCBIHuRef
CHM1_110114,488,406 - 114,860,295 (+)NCBICHM1_1
T2T-CHM13v2.010113,337,655 - 113,746,195 (+)NCBIT2T-CHM13v2.0
Vti1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391955,304,489 - 55,615,893 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1955,304,727 - 55,615,741 (+)EnsemblGRCm39 Ensembl
GRCm381955,316,030 - 55,627,461 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1955,316,295 - 55,627,309 (+)EnsemblGRCm38mm10GRCm38
MGSCv371955,390,841 - 55,701,051 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361955,369,601 - 55,679,811 (+)NCBIMGSCv36mm8
Celera1957,507,484 - 57,817,205 (+)NCBICelera
Cytogenetic Map19D2NCBI
cM Map1951.35NCBI
Vti1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81264,361,538 - 264,667,171 (+)NCBIGRCr8
mRatBN7.21254,356,343 - 254,661,854 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1254,356,429 - 254,661,852 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1262,561,531 - 262,865,459 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01269,267,611 - 269,571,543 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01261,915,213 - 262,220,349 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01276,310,072 - 276,508,635 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1276,309,927 - 276,490,602 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01283,705,427 - 283,902,980 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41261,664,003 - 261,905,744 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11261,875,047 - 262,116,789 (+)NCBI
Celera1250,063,252 - 250,364,895 (+)NCBICelera
Cytogenetic Map1q55NCBI
Vti1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543117,542,979 - 17,919,191 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543117,542,605 - 17,910,809 (+)NCBIChiLan1.0ChiLan1.0
VTI1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28124,322,328 - 124,825,855 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110124,327,795 - 124,831,021 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010109,037,834 - 109,539,019 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110112,476,478 - 112,857,949 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10112,476,859 - 112,845,615 (+)Ensemblpanpan1.1panPan2
VTI1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12823,496,553 - 23,854,609 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2823,496,593 - 23,842,369 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2823,648,320 - 24,006,512 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02824,029,018 - 24,386,280 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2824,029,040 - 24,375,059 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12823,586,067 - 23,944,129 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02823,597,236 - 23,951,876 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02823,793,699 - 24,150,727 (+)NCBIUU_Cfam_GSD_1.0
VTI1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14122,849,004 - 123,215,938 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114122,848,727 - 123,217,568 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214133,772,147 - 133,859,216 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VTI1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19105,330,089 - 105,828,029 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9105,330,143 - 105,695,049 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604866,533,145 - 67,038,520 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vti1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473733,664,093 - 34,020,863 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473733,601,794 - 34,020,779 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000022561   ⟹   ENSSTOP00000014970
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364863,010,490 - 3,347,424 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000027699   ⟹   ENSSTOP00000020222
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364863,010,490 - 3,347,424 (+)Ensembl
RefSeq Acc Id: XM_005320678   ⟹   XP_005320735
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721322,213,150 - 22,550,858 (-)NCBI
SpeTri2.0NW_0049364863,010,169 - 3,353,512 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021723300   ⟹   XP_021578975
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721322,202,396 - 22,550,923 (-)NCBI
SpeTri2.0NW_0049364863,010,169 - 3,353,512 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040272252   ⟹   XP_040128186
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721322,202,400 - 22,551,182 (-)NCBI
RefSeq Acc Id: XM_040272253   ⟹   XP_040128187
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721322,202,400 - 22,551,182 (-)NCBI
RefSeq Acc Id: XM_040272254   ⟹   XP_040128188
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721322,326,060 - 22,551,182 (-)NCBI
RefSeq Acc Id: XM_040272255   ⟹   XP_040128189
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721322,090,405 - 22,551,182 (-)NCBI
RefSeq Acc Id: XM_040272256   ⟹   XP_040128190
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721322,195,546 - 22,551,182 (-)NCBI
RefSeq Acc Id: XM_040272257   ⟹   XP_040128191
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721322,202,400 - 22,551,182 (-)NCBI
RefSeq Acc Id: XR_005727909
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721322,089,354 - 22,551,182 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005320735   ⟸   XM_005320678
- Peptide Label: isoform X8
- UniProtKB: I3MS75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021578975   ⟸   XM_021723300
- Peptide Label: isoform X7
- UniProtKB: I3N776 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040128189   ⟸   XM_040272255
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040128190   ⟸   XM_040272256
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040128187   ⟸   XM_040272253
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040128186   ⟸   XM_040272252
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040128191   ⟸   XM_040272257
- Peptide Label: isoform X6
RefSeq Acc Id: XP_040128188   ⟸   XM_040272254
- Peptide Label: isoform X3
RefSeq Acc Id: ENSSTOP00000020222   ⟸   ENSSTOT00000027699
RefSeq Acc Id: ENSSTOP00000014970   ⟸   ENSSTOT00000022561
Protein Domains
t-SNARE coiled-coil homology


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000026666 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000022561.2 UniProtKB/TrEMBL
  ENSSTOT00000027699.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.110 UniProtKB/TrEMBL
  1.20.58.400 UniProtKB/TrEMBL
InterPro GOSR2/Membrin/Bos1 UniProtKB/TrEMBL
  SNARE UniProtKB/TrEMBL
  T_SNARE_dom UniProtKB/TrEMBL
  v-SNARE_N_sf UniProtKB/TrEMBL
  Vesicle_trsprt_v-SNARE_N UniProtKB/TrEMBL
NCBI Gene Vti1a ENTREZGENE
PANTHER VESICLE TRANSPORT THROUGH INTERACTION WITH T-SNARES HOMOLOG 1A UniProtKB/TrEMBL
  VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED UniProtKB/TrEMBL
Pfam V-SNARE UniProtKB/TrEMBL
  V-SNARE_C UniProtKB/TrEMBL
PIRSF Membrin-2 UniProtKB/TrEMBL
SMART t_SNARE UniProtKB/TrEMBL
Superfamily-SCOP SNARE fusion complex UniProtKB/TrEMBL
  SSF47661 UniProtKB/TrEMBL
UniProt I3MS75 ENTREZGENE, UniProtKB/TrEMBL
  I3N776 ENTREZGENE, UniProtKB/TrEMBL