Slc6a18 (solute carrier family 6 (neurotransmitter transporter), member 18) - Rat Genome Database

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Gene: Slc6a18 (solute carrier family 6 (neurotransmitter transporter), member 18) Mus musculus
Analyze
Symbol: Slc6a18
Name: solute carrier family 6 (neurotransmitter transporter), member 18
RGD ID: 737123
MGI Page MGI
Description: Enables neutral L-amino acid:sodium:chloride symporter activity. Involved in neutral amino acid transport and renal amino acid absorption. Acts upstream of or within amino acid transmembrane transport. Located in apical plasma membrane and brush border membrane. Is expressed in several structures, including metanephros. Orthologous to human SLC6A18 (solute carrier family 6 member 18).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: b(0)AT3; B0AT3; D630001K16Rik; sodium and chloride dependent transporter Xtrp2; sodium- and chloride-dependent transporter XTRP2; sodium-dependent neutral amino acid transporter B(0)AT3; solute carrier family 6 member 18; system B 0 neutral amino acid transporter AT3; system B(0) neutral amino acid transporter AT3; X transporter protein 2; Xt2; Xtr; Xtrp2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391373,809,869 - 73,826,142 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1373,809,871 - 73,826,142 (-)EnsemblGRCm39 Ensembl
GRCm381373,661,750 - 73,678,023 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1373,661,752 - 73,678,023 (-)EnsemblGRCm38mm10GRCm38
MGSCv371373,799,198 - 73,815,471 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361374,130,039 - 74,144,003 (-)NCBIMGSCv36mm8
Celera1375,990,742 - 76,006,978 (-)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9932288   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:15121838   PMID:15489334   PMID:16125675   PMID:16141072   PMID:16141073   PMID:16174864  
PMID:16602821   PMID:17167413   PMID:19478081   PMID:19521566   PMID:20377526   PMID:21267068   PMID:21873635   PMID:25855264   PMID:26240152   PMID:27820600  


Genomics

Comparative Map Data
Slc6a18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391373,809,869 - 73,826,142 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1373,809,871 - 73,826,142 (-)EnsemblGRCm39 Ensembl
GRCm381373,661,750 - 73,678,023 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1373,661,752 - 73,678,023 (-)EnsemblGRCm38mm10GRCm38
MGSCv371373,799,198 - 73,815,471 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361374,130,039 - 74,144,003 (-)NCBIMGSCv36mm8
Celera1375,990,742 - 76,006,978 (-)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.13NCBI
SLC6A18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3851,225,381 - 1,246,189 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl51,225,381 - 1,246,189 (+)EnsemblGRCh38hg38GRCh38
GRCh3751,225,496 - 1,246,304 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3651,278,470 - 1,299,303 (+)NCBINCBI36Build 36hg18NCBI36
Build 3451,278,469 - 1,299,303NCBI
Celera51,262,353 - 1,283,111 (+)NCBICelera
Cytogenetic Map5p15.33NCBI
HuRef51,206,768 - 1,227,774 (+)NCBIHuRef
CHM1_151,225,356 - 1,246,130 (+)NCBICHM1_1
T2T-CHM13v2.051,132,355 - 1,153,096 (+)NCBIT2T-CHM13v2.0
Slc6a18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8131,436,577 - 31,450,478 (+)NCBIGRCr8
mRatBN7.2129,607,288 - 29,621,925 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,608,077 - 29,621,925 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx129,409,233 - 29,423,054 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0135,409,083 - 35,422,904 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,609,861 - 29,623,682 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0132,221,679 - 32,235,599 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl132,221,636 - 32,236,051 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0133,646,546 - 33,660,461 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4130,415,234 - 30,429,059 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1130,418,178 - 30,432,004 (+)NCBI
Celera128,256,104 - 28,269,929 (+)NCBICelera
Cytogenetic Map1p11NCBI
Slc6a18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955504634,665 - 644,576 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955504634,615 - 644,667 (+)NCBIChiLan1.0ChiLan1.0
SLC6A18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v241,485,506 - 1,507,595 (+)NCBINHGRI_mPanPan1-v2
PanPan1.1 Ensembl51,272,746 - 1,293,181 (+)Ensemblpanpan1.1panPan2
SLC6A18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13411,312,172 - 11,327,493 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3411,290,166 - 11,327,505 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3415,817,657 - 15,837,358 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03411,208,459 - 11,228,159 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3411,190,836 - 11,228,161 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13411,259,258 - 11,278,952 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03411,243,187 - 11,258,500 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03411,454,210 - 11,469,522 (-)NCBIUU_Cfam_GSD_1.0
Slc6a18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213244,336,037 - 244,351,884 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936815497,396 - 513,175 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936815497,465 - 513,089 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC6A18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1679,277,696 - 79,292,530 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11679,278,126 - 79,292,463 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21685,936,688 - 85,951,025 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC6A18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.141,054,353 - 1,079,478 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl41,057,136 - 1,075,426 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605435,619,384 - 35,641,717 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc6a18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624751608,766 - 619,213 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624751608,834 - 617,995 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc6a18
551 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2641
Count of miRNA genes:508
Interacting mature miRNAs:618
Transcripts:ENSMUST00000022105, ENSMUST00000109679, ENSMUST00000109680
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134058825374588253Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134148904275489158Mouse
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4521044283744746Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134521044283744746Mouse
4142372Moo2_mmodifier of Odc2 (mouse)Not determinedX5031841184318559Mouse
1301666Eae13_msusceptibility to experimental allergic encephalomyelitis 13 (mouse)Not determined135031841184318559Mouse
1300573Elsgp2_melevated serum gp70 2 (mouse)Not determined135061682884617027Mouse
14746975Manh74_mmandible shape 74 (mouse)135247726986477269Mouse
1302073Pgct1_mprimordial germ cell tumor locus 1 (mouse)Not determined135382078387820897Mouse
1357563Bmch6_mbone mechanical trait 6 (mouse)Not determined135538498089385140Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
1558850Sgp3_mserum gp70 production 3 (mouse)Not determined135647045676971314Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
1357553Cia28_mcollagen induced arthritis 28 (mouse)Not determined135662924996239162Mouse
10412163Wra1_mwheel running activity 1 (mouse)Not determined135913260093132738Mouse
1300941Skl6_mskeletal size (tail length) 6 (mouse)Not determined136425082198250945Mouse
1301949Skull20_mskull morphology 20 (mouse)Not determined136425082198250945Mouse
1301445Listr2_mlisteriosis resistance 2 (mouse)Not determined1366744601100744746Mouse
1301593Heal8_mwound healing/regeneration 8 (mouse)Not determined1368053999102054119Mouse
14696726Kidrq3_mkidney weight, right QTL 3 (mouse)1368217066102217066Mouse
14747007Mancz11_mmandible centroid size 11 (mouse)1370111284104111284Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001040692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001136087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001168643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001168644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001168645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001168646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC158359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF075262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF075263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF075264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF075265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF075266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF075267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK128907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC022660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA491609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000022105   ⟹   ENSMUSP00000022105
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1373,811,147 - 73,826,138 (-)Ensembl
GRCm38.p6 Ensembl1373,663,028 - 73,678,019 (-)Ensembl
RefSeq Acc Id: ENSMUST00000109679   ⟹   ENSMUSP00000105301
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1373,809,871 - 73,826,142 (-)Ensembl
GRCm38.p6 Ensembl1373,661,752 - 73,678,023 (-)Ensembl
RefSeq Acc Id: ENSMUST00000109680   ⟹   ENSMUSP00000105302
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1373,810,014 - 73,826,139 (-)Ensembl
GRCm38.p6 Ensembl1373,661,895 - 73,678,020 (-)Ensembl
RefSeq Acc Id: ENSMUST00000220650   ⟹   ENSMUSP00000152403
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1373,812,156 - 73,826,120 (-)Ensembl
GRCm38.p6 Ensembl1373,664,037 - 73,678,001 (-)Ensembl
RefSeq Acc Id: ENSMUST00000220703   ⟹   ENSMUSP00000152605
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1373,812,340 - 73,815,012 (-)Ensembl
GRCm38.p6 Ensembl1373,664,221 - 73,666,893 (-)Ensembl
RefSeq Acc Id: ENSMUST00000221026   ⟹   ENSMUSP00000152273
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1373,822,708 - 73,826,141 (-)Ensembl
GRCm38.p6 Ensembl1373,674,589 - 73,678,022 (-)Ensembl
RefSeq Acc Id: ENSMUST00000221987   ⟹   ENSMUSP00000152697
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1373,822,555 - 73,826,120 (-)Ensembl
GRCm38.p6 Ensembl1373,674,436 - 73,678,001 (-)Ensembl
RefSeq Acc Id: ENSMUST00000222029   ⟹   ENSMUSP00000152525
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1373,812,156 - 73,826,120 (-)Ensembl
GRCm38.p6 Ensembl1373,664,037 - 73,678,001 (-)Ensembl
RefSeq Acc Id: ENSMUST00000223026   ⟹   ENSMUSP00000152516
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1373,812,156 - 73,826,120 (-)Ensembl
GRCm38.p6 Ensembl1373,664,037 - 73,678,001 (-)Ensembl
RefSeq Acc Id: ENSMUST00000223074   ⟹   ENSMUSP00000152146
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1373,812,156 - 73,826,120 (-)Ensembl
GRCm38.p6 Ensembl1373,664,037 - 73,678,001 (-)Ensembl
RefSeq Acc Id: NM_001040692   ⟹   NP_001035782
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391373,809,869 - 73,826,142 (-)NCBI
GRCm381373,661,750 - 73,678,023 (-)ENTREZGENE
MGSCv371373,799,198 - 73,815,471 (-)RGD
Celera1375,990,742 - 76,006,978 (-)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001136087   ⟹   NP_001129559
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391373,809,869 - 73,826,142 (-)NCBI
GRCm381373,661,750 - 73,678,023 (-)ENTREZGENE
MGSCv371373,799,198 - 73,815,471 (-)RGD
Celera1375,990,742 - 76,006,978 (-)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001168643   ⟹   NP_001162114
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391373,809,869 - 73,826,142 (-)NCBI
GRCm381373,661,750 - 73,678,023 (-)ENTREZGENE
MGSCv371373,799,198 - 73,815,471 (-)RGD
Celera1375,990,742 - 76,006,978 (-)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001168644   ⟹   NP_001162115
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391373,809,869 - 73,826,142 (-)NCBI
GRCm381373,661,750 - 73,678,023 (-)ENTREZGENE
MGSCv371373,799,198 - 73,815,471 (-)RGD
Celera1375,990,742 - 76,006,978 (-)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001168645   ⟹   NP_001162116
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391373,809,869 - 73,826,142 (-)NCBI
GRCm381373,661,750 - 73,678,023 (-)ENTREZGENE
MGSCv371373,799,198 - 73,815,471 (-)RGD
Celera1375,990,742 - 76,006,978 (-)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001168646   ⟹   NP_001162117
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391373,809,869 - 73,826,142 (-)NCBI
GRCm381373,661,750 - 73,678,023 (-)ENTREZGENE
MGSCv371373,799,198 - 73,815,471 (-)RGD
Celera1375,990,742 - 76,006,978 (-)RGD
cM Map13 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001035782 (Get FASTA)   NCBI Sequence Viewer  
  NP_001129559 (Get FASTA)   NCBI Sequence Viewer  
  NP_001162114 (Get FASTA)   NCBI Sequence Viewer  
  NP_001162115 (Get FASTA)   NCBI Sequence Viewer  
  NP_001162116 (Get FASTA)   NCBI Sequence Viewer  
  NP_001162117 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC27757 (Get FASTA)   NCBI Sequence Viewer  
  AAC27758 (Get FASTA)   NCBI Sequence Viewer  
  AAC27759 (Get FASTA)   NCBI Sequence Viewer  
  AAC27760 (Get FASTA)   NCBI Sequence Viewer  
  AAC27761 (Get FASTA)   NCBI Sequence Viewer  
  AAC27762 (Get FASTA)   NCBI Sequence Viewer  
  AAH10748 (Get FASTA)   NCBI Sequence Viewer  
  EDL37056 (Get FASTA)   NCBI Sequence Viewer  
  EDL37057 (Get FASTA)   NCBI Sequence Viewer  
  EDL37058 (Get FASTA)   NCBI Sequence Viewer  
  EDL37059 (Get FASTA)   NCBI Sequence Viewer  
  EDL37061 (Get FASTA)   NCBI Sequence Viewer  
  EDL37062 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000022105
  ENSMUSP00000022105.9
  ENSMUSP00000105301
  ENSMUSP00000105301.3
  ENSMUSP00000105302
  ENSMUSP00000105302.3
  ENSMUSP00000152146
  ENSMUSP00000152146.2
  ENSMUSP00000152273.2
  ENSMUSP00000152403
  ENSMUSP00000152403.2
  ENSMUSP00000152516.2
  ENSMUSP00000152525
  ENSMUSP00000152525.2
  ENSMUSP00000152605.2
  ENSMUSP00000152697.2
GenBank Protein O88576 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001035782   ⟸   NM_001040692
- Peptide Label: isoform 1
- UniProtKB: O88581 (UniProtKB/Swiss-Prot),   O88580 (UniProtKB/Swiss-Prot),   O88579 (UniProtKB/Swiss-Prot),   O88578 (UniProtKB/Swiss-Prot),   O88577 (UniProtKB/Swiss-Prot),   Q91XG6 (UniProtKB/Swiss-Prot),   O88576 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001162114   ⟸   NM_001168643
- Peptide Label: isoform 3
- UniProtKB: A0A217FL56 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001129559   ⟸   NM_001136087
- Peptide Label: isoform 2
- UniProtKB: O88576 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001162115   ⟸   NM_001168644
- Peptide Label: isoform 4
- UniProtKB: O88576 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001162116   ⟸   NM_001168645
- Peptide Label: isoform 5
- UniProtKB: O88576 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001162117   ⟸   NM_001168646
- Peptide Label: isoform 6
- UniProtKB: O88576 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000152146   ⟸   ENSMUST00000223074
RefSeq Acc Id: ENSMUSP00000152516   ⟸   ENSMUST00000223026
RefSeq Acc Id: ENSMUSP00000152525   ⟸   ENSMUST00000222029
RefSeq Acc Id: ENSMUSP00000022105   ⟸   ENSMUST00000022105
RefSeq Acc Id: ENSMUSP00000105301   ⟸   ENSMUST00000109679
RefSeq Acc Id: ENSMUSP00000105302   ⟸   ENSMUST00000109680
RefSeq Acc Id: ENSMUSP00000152273   ⟸   ENSMUST00000221026
RefSeq Acc Id: ENSMUSP00000152697   ⟸   ENSMUST00000221987
RefSeq Acc Id: ENSMUSP00000152403   ⟸   ENSMUST00000220650
RefSeq Acc Id: ENSMUSP00000152605   ⟸   ENSMUST00000220703

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O88576-F1-model_v2 AlphaFold O88576 1-615 view protein structure

Promoters
RGD ID:8680804
Promoter ID:EPDNEW_M18433
Type:multiple initiation site
Name:Slc6a18_1
Description:Mus musculus solute carrier family 6 , member 18 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381373,678,020 - 73,678,080EPDNEW
RGD ID:6824401
Promoter ID:MM_KWN:14661
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:NM_001040692,   NM_001040692_SLC6A18,   NM_001136087,   NM_001168643,   NM_001168644,   NM_001168645,   NM_001168646
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361373,815,101 - 73,815,601 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1336892 AgrOrtholog
Ensembl Genes ENSMUSG00000021612 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000022105 ENTREZGENE
  ENSMUST00000022105.15 UniProtKB/TrEMBL
  ENSMUST00000109679 ENTREZGENE
  ENSMUST00000109679.4 UniProtKB/Swiss-Prot
  ENSMUST00000109680 ENTREZGENE
  ENSMUST00000109680.10 UniProtKB/Swiss-Prot
  ENSMUST00000220650 ENTREZGENE
  ENSMUST00000220650.2 UniProtKB/Swiss-Prot
  ENSMUST00000220703.2 UniProtKB/TrEMBL
  ENSMUST00000221026.2 UniProtKB/TrEMBL
  ENSMUST00000221987.2 UniProtKB/TrEMBL
  ENSMUST00000222029 ENTREZGENE
  ENSMUST00000222029.2 UniProtKB/Swiss-Prot
  ENSMUST00000223026.2 UniProtKB/Swiss-Prot
  ENSMUST00000223074 ENTREZGENE
  ENSMUST00000223074.2 UniProtKB/Swiss-Prot
InterPro B0AT3_SLC6sbd UniProtKB/Swiss-Prot
  Na/ntran_symport UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neutral_aa_SLC6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNS_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22598 UniProtKB/Swiss-Prot
MGD MGI:1336892 ENTREZGENE
NCBI Gene 22598 ENTREZGENE
PANTHER INACTIVE SODIUM-DEPENDENT NEUTRAL AMINO ACID TRANSPORTER B(0)AT3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11616 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SNF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc6a18 PhenoGen
PRINTS NANEUSMPORT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ORPHTRNSPORT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE NA_NEUROTRAN_SYMP_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NA_NEUROTRAN_SYMP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NA_NEUROTRAN_SYMP_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF161070 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1Y7VJ53_MOUSE UniProtKB/TrEMBL
  A0A1Y7VJY3_MOUSE UniProtKB/TrEMBL
  A0A1Y7VMA5_MOUSE UniProtKB/TrEMBL
  A0A217FL56 ENTREZGENE, UniProtKB/TrEMBL
  O88576 ENTREZGENE
  O88577 ENTREZGENE
  O88578 ENTREZGENE
  O88579 ENTREZGENE
  O88580 ENTREZGENE
  O88581 ENTREZGENE
  Q91XG6 ENTREZGENE
  S6A18_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary O88577 UniProtKB/Swiss-Prot
  O88578 UniProtKB/Swiss-Prot
  O88579 UniProtKB/Swiss-Prot
  O88580 UniProtKB/Swiss-Prot
  O88581 UniProtKB/Swiss-Prot
  Q91XG6 UniProtKB/Swiss-Prot