Ralgapa1 (Ral GTPase activating protein, alpha subunit 1) - Rat Genome Database

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Gene: Ralgapa1 (Ral GTPase activating protein, alpha subunit 1) Mus musculus
Analyze
Symbol: Ralgapa1
Name: Ral GTPase activating protein, alpha subunit 1
RGD ID: 735820
MGI Page MGI
Description: Predicted to enable GTPase activator activity and protein heterodimerization activity. Predicted to be involved in regulation of small GTPase mediated signal transduction. Located in cytoplasm and nucleus. Is expressed in several structures, including 1st branchial arch; brain; metanephros; placenta; and trunk. Orthologous to human RALGAPA1 (Ral GTPase activating protein catalytic subunit alpha 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2310003F20Rik; 4930400K19Rik; AI563624; Ga; GAP-related interacting partner to E12; GAP-related-interacting partner to E12; Garnl1; GRIPE; GTPase activating RANGAP domain-like 1; GTPase-activating RapGAP domain-like 1; mKIAA0884; p240; ral GTPase-activating protein alpha subunit 1; ral GTPase-activating protein subunit alpha-1; tuberin-like protein 1; Tul; tulip 1 protein; Tulip1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391255,649,673 - 55,868,522 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1255,649,681 - 55,867,952 (-)EnsemblGRCm39 Ensembl
GRCm381255,602,888 - 55,821,574 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1255,602,896 - 55,821,167 (-)EnsemblGRCm38mm10GRCm38
MGSCv371256,703,886 - 56,922,154 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361256,521,029 - 56,739,297 (-)NCBIMGSCv36mm8
Celera1256,752,528 - 56,970,531 (-)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1224.06NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IDA)
nucleus  (IDA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Cloning and characterization of GRIPE, a novel interacting partner of the transcription factor E12 in developing mouse forebrain. Heng JI and Tan SS, J Biol Chem 2002 Nov 8;277(45):43152-9.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Aug 31;10(4):167-80.
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:11042159   PMID:11076861   PMID:11221845   PMID:12477932   PMID:14610273   PMID:15498464   PMID:16141072   PMID:16141073   PMID:21677750  
PMID:21873635   PMID:25220458   PMID:28706196   PMID:30989113   PMID:31138677   PMID:32325033   PMID:32581705   PMID:35879328   PMID:38355793  


Genomics

Comparative Map Data
Ralgapa1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391255,649,673 - 55,868,522 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1255,649,681 - 55,867,952 (-)EnsemblGRCm39 Ensembl
GRCm381255,602,888 - 55,821,574 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1255,602,896 - 55,821,167 (-)EnsemblGRCm38mm10GRCm38
MGSCv371256,703,886 - 56,922,154 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361256,521,029 - 56,739,297 (-)NCBIMGSCv36mm8
Celera1256,752,528 - 56,970,531 (-)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1224.06NCBI
RALGAPA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381435,538,356 - 35,809,295 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1435,538,352 - 35,809,304 (-)EnsemblGRCh38hg38GRCh38
GRCh371436,007,562 - 36,278,501 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361435,077,309 - 35,348,183 (-)NCBINCBI36Build 36hg18NCBI36
Celera1415,871,418 - 16,142,289 (-)NCBICelera
Cytogenetic Map14q13.2NCBI
HuRef1416,121,448 - 16,392,248 (-)NCBIHuRef
CHM1_11436,007,239 - 36,278,471 (-)NCBICHM1_1
T2T-CHM13v2.01429,726,082 - 29,997,030 (-)NCBIT2T-CHM13v2.0
Ralgapa1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8678,712,554 - 78,987,486 (-)NCBIGRCr8
mRatBN7.2672,977,432 - 73,252,378 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl672,977,432 - 73,252,378 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx673,399,057 - 73,673,165 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0673,705,427 - 73,979,553 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0673,132,937 - 73,407,056 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0676,386,971 - 76,661,530 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl676,396,784 - 76,608,864 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0685,920,793 - 86,193,578 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4675,849,629 - 76,163,553 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1675,853,593 - 76,049,363 (-)NCBI
Celera671,819,235 - 72,085,407 (-)NCBICelera
Cytogenetic Map6q23NCBI
Ralgapa1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540925,337,699 - 25,583,657 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540925,336,503 - 25,582,881 (+)NCBIChiLan1.0ChiLan1.0
RALGAPA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21536,852,776 - 37,123,524 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11436,069,279 - 36,340,001 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01416,292,189 - 16,562,880 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11434,472,884 - 34,743,430 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1434,472,880 - 34,743,430 (-)Ensemblpanpan1.1panPan2
RALGAPA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1814,221,516 - 14,463,481 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl814,222,749 - 14,462,998 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha814,017,673 - 14,259,618 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0814,327,816 - 14,570,610 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl814,327,816 - 14,570,547 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1814,028,892 - 14,271,002 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0814,094,489 - 14,336,412 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0814,384,204 - 14,626,322 (-)NCBIUU_Cfam_GSD_1.0
Ralgapa1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864046,143,552 - 46,361,013 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364949,659,285 - 9,866,408 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364949,649,444 - 9,866,942 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RALGAPA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl764,141,014 - 64,372,694 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1764,140,977 - 64,372,683 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2769,115,446 - 69,174,647 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RALGAPA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12412,344,951 - 12,615,669 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2412,344,934 - 12,615,622 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660531,309,431 - 1,586,599 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ralgapa1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248381,040,525 - 1,258,151 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248381,040,108 - 1,269,000 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ralgapa1
6312 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:753
Count of miRNA genes:316
Interacting mature miRNAs:339
Transcripts:ENSMUST00000085385, ENSMUST00000110687
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
12904004Opfaq11_mopen field activity QTL 11 (mouse)125315562457276756Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125469591082665939Mouse
12903999Opfaq8_mopen field activity QTL 8 (mouse)125490765357870585Mouse

Markers in Region
D12Mit246  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381255,747,618 - 55,747,718UniSTSGRCm38
MGSCv371256,848,605 - 56,848,705UniSTSGRCm37
Celera1256,897,022 - 56,897,122UniSTS
Cytogenetic Map12C1UniSTS
cM Map1225.0UniSTS
Whitehead Genetic1219.7UniSTS
UniSTS:236850  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381255,748,027 - 55,748,247UniSTSGRCm38
MGSCv371256,849,014 - 56,849,234UniSTSGRCm37
Celera1256,897,431 - 56,897,651UniSTS
Cytogenetic Map12C1UniSTS
AI563624  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381255,603,058 - 55,603,205UniSTSGRCm38
MGSCv371256,704,045 - 56,704,192UniSTSGRCm37
Celera1256,752,687 - 56,752,834UniSTS
Cytogenetic Map12C1UniSTS
Whitehead/MRC_RH12573.06UniSTS
px-8a5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3H2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map6B3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001003719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001112714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001368814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB032400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB032418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC107633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC159624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02115616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY066011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY596972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY596973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY596974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC150707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE650514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY125283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD776675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN459409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000085385   ⟹   ENSMUSP00000082503
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1255,649,684 - 55,867,952 (-)Ensembl
GRCm38.p6 Ensembl1255,602,899 - 55,821,167 (-)Ensembl
RefSeq Acc Id: ENSMUST00000110687   ⟹   ENSMUSP00000106315
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1255,649,714 - 55,867,952 (-)Ensembl
GRCm38.p6 Ensembl1255,602,929 - 55,821,167 (-)Ensembl
RefSeq Acc Id: ENSMUST00000219323   ⟹   ENSMUSP00000151705
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1255,659,179 - 55,687,498 (-)Ensembl
GRCm38.p6 Ensembl1255,612,394 - 55,640,713 (-)Ensembl
RefSeq Acc Id: ENSMUST00000219432   ⟹   ENSMUSP00000151857
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1255,651,025 - 55,867,882 (-)Ensembl
GRCm38.p6 Ensembl1255,604,240 - 55,821,097 (-)Ensembl
RefSeq Acc Id: ENSMUST00000219451   ⟹   ENSMUSP00000151363
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1255,650,645 - 55,689,233 (-)Ensembl
GRCm38.p6 Ensembl1255,603,860 - 55,642,448 (-)Ensembl
RefSeq Acc Id: ENSMUST00000219516
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1255,650,828 - 55,659,422 (-)Ensembl
GRCm38.p6 Ensembl1255,604,043 - 55,612,637 (-)Ensembl
RefSeq Acc Id: ENSMUST00000219529
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1255,759,255 - 55,867,866 (-)Ensembl
GRCm38.p6 Ensembl1255,712,470 - 55,821,081 (-)Ensembl
RefSeq Acc Id: ENSMUST00000219542
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1255,768,964 - 55,867,952 (-)Ensembl
GRCm38.p6 Ensembl1255,722,179 - 55,821,167 (-)Ensembl
RefSeq Acc Id: ENSMUST00000219566   ⟹   ENSMUSP00000151846
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1255,723,875 - 55,744,684 (-)Ensembl
GRCm38.p6 Ensembl1255,677,090 - 55,697,899 (-)Ensembl
RefSeq Acc Id: ENSMUST00000220017
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1255,703,950 - 55,740,568 (-)Ensembl
GRCm38.p6 Ensembl1255,657,165 - 55,693,783 (-)Ensembl
RefSeq Acc Id: ENSMUST00000220367   ⟹   ENSMUSP00000151498
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1255,649,681 - 55,867,552 (-)Ensembl
GRCm38.p6 Ensembl1255,602,896 - 55,820,767 (-)Ensembl
RefSeq Acc Id: ENSMUST00000226244   ⟹   ENSMUSP00000154749
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1255,649,681 - 55,867,552 (-)Ensembl
GRCm38.p6 Ensembl1255,602,896 - 55,820,767 (-)Ensembl
RefSeq Acc Id: NM_001003719   ⟹   NP_001003719
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391255,649,675 - 55,868,301 (-)NCBI
GRCm381255,602,890 - 55,821,516 (-)NCBI
MGSCv371256,703,886 - 56,922,154 (-)RGD
Celera1256,752,519 - 56,970,880 (-)NCBI
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001112714   ⟹   NP_001106185
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391255,649,675 - 55,868,301 (-)NCBI
GRCm381255,602,890 - 55,821,516 (-)NCBI
MGSCv371256,703,886 - 56,922,154 (-)RGD
Celera1256,752,519 - 56,970,880 (-)NCBI
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001286263   ⟹   NP_001273192
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391255,649,675 - 55,868,301 (-)NCBI
GRCm381255,602,890 - 55,821,516 (-)NCBI
Celera1256,752,519 - 56,970,880 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001368814   ⟹   NP_001355743
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391255,649,673 - 55,867,952 (-)NCBI
GRCm381255,602,888 - 55,821,167 (-)NCBI
Sequence:
RefSeq Acc Id: NM_019994   ⟹   NP_064378
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391255,649,675 - 55,868,301 (-)NCBI
GRCm381255,602,890 - 55,821,516 (-)NCBI
MGSCv371256,703,886 - 56,922,154 (-)RGD
Celera1256,752,519 - 56,970,880 (-)NCBI
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006516104   ⟹   XP_006516167
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391255,649,675 - 55,868,522 (-)NCBI
GRCm381255,602,890 - 55,821,574 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006516107   ⟹   XP_006516170
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391255,649,684 - 55,868,522 (-)NCBI
GRCm381255,602,890 - 55,821,574 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006516109   ⟹   XP_006516172
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391255,649,675 - 55,868,522 (-)NCBI
GRCm381255,602,890 - 55,821,574 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246825   ⟹   XP_030102685
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391255,649,675 - 55,868,522 (-)NCBI
GRCm381255,602,890 - 55,821,574 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246826   ⟹   XP_030102686
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391255,649,675 - 55,868,522 (-)NCBI
GRCm381255,602,890 - 55,821,574 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157540   ⟹   XP_036013433
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391255,649,675 - 55,868,522 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157541   ⟹   XP_036013434
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391255,649,684 - 55,868,522 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157542   ⟹   XP_036013435
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391255,649,675 - 55,868,522 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157543   ⟹   XP_036013436
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391255,756,499 - 55,868,522 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157544   ⟹   XP_036013437
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391255,649,675 - 55,833,045 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157545   ⟹   XP_036013438
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391255,649,675 - 55,786,230 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004937530
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391255,649,675 - 55,868,522 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004937531
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391255,649,675 - 55,868,522 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001003719 (Get FASTA)   NCBI Sequence Viewer  
  NP_001106185 (Get FASTA)   NCBI Sequence Viewer  
  NP_001273192 (Get FASTA)   NCBI Sequence Viewer  
  NP_001355743 (Get FASTA)   NCBI Sequence Viewer  
  NP_064378 (Get FASTA)   NCBI Sequence Viewer  
  XP_006516167 (Get FASTA)   NCBI Sequence Viewer  
  XP_006516170 (Get FASTA)   NCBI Sequence Viewer  
  XP_006516172 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102685 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102686 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013433 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013434 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013435 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013436 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013437 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013438 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI45120 (Get FASTA)   NCBI Sequence Viewer  
  AAI50708 (Get FASTA)   NCBI Sequence Viewer  
  AAL47577 (Get FASTA)   NCBI Sequence Viewer  
  AAT49273 (Get FASTA)   NCBI Sequence Viewer  
  AAT49274 (Get FASTA)   NCBI Sequence Viewer  
  AAT49275 (Get FASTA)   NCBI Sequence Viewer  
  BAA92774 (Get FASTA)   NCBI Sequence Viewer  
  BAB29681 (Get FASTA)   NCBI Sequence Viewer  
  BAC31171 (Get FASTA)   NCBI Sequence Viewer  
  BAC38939 (Get FASTA)   NCBI Sequence Viewer  
  BAC98046 (Get FASTA)   NCBI Sequence Viewer  
  BAE32137 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000082503
  ENSMUSP00000082503.6
  ENSMUSP00000106315.2
  ENSMUSP00000151363.2
  ENSMUSP00000151498
  ENSMUSP00000151498.2
  ENSMUSP00000151705.2
  ENSMUSP00000151846.2
  ENSMUSP00000151857
  ENSMUSP00000151857.2
  ENSMUSP00000154749
  ENSMUSP00000154749.2
GenBank Protein Q6GYP7 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001003719   ⟸   NM_001003719
- Peptide Label: isoform 3
- UniProtKB: B7ZNA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_064378   ⟸   NM_019994
- Peptide Label: isoform 2
- UniProtKB: Q8CIW4 (UniProtKB/Swiss-Prot),   Q8C9G8 (UniProtKB/Swiss-Prot),   Q8BNJ5 (UniProtKB/Swiss-Prot),   Q6ZQ28 (UniProtKB/Swiss-Prot),   Q6GYP6 (UniProtKB/Swiss-Prot),   Q9JMC4 (UniProtKB/Swiss-Prot),   Q6GYP7 (UniProtKB/Swiss-Prot),   B7ZNA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001106185   ⟸   NM_001112714
- Peptide Label: isoform 2
- UniProtKB: Q8CIW4 (UniProtKB/Swiss-Prot),   Q8C9G8 (UniProtKB/Swiss-Prot),   Q8BNJ5 (UniProtKB/Swiss-Prot),   Q6ZQ28 (UniProtKB/Swiss-Prot),   Q6GYP6 (UniProtKB/Swiss-Prot),   Q9JMC4 (UniProtKB/Swiss-Prot),   Q6GYP7 (UniProtKB/Swiss-Prot),   B7ZNA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001273192   ⟸   NM_001286263
- Peptide Label: isoform 4
- UniProtKB: A0A1W2P832 (UniProtKB/TrEMBL),   B7ZNA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006516170   ⟸   XM_006516107
- Peptide Label: isoform X8
- UniProtKB: A0A1W2P712 (UniProtKB/TrEMBL),   B7ZNA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006516167   ⟸   XM_006516104
- Peptide Label: isoform X5
- UniProtKB: B7ZNA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006516172   ⟸   XM_006516109
- Peptide Label: isoform X3
- UniProtKB: A0A2I3BRX9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001355743   ⟸   NM_001368814
- Peptide Label: isoform 1
- UniProtKB: A0A2I3BRX9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030102686   ⟸   XM_030246826
- Peptide Label: isoform X2
- UniProtKB: A0A2I3BRX9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030102685   ⟸   XM_030246825
- Peptide Label: isoform X1
- UniProtKB: A0A2I3BRX9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000106315   ⟸   ENSMUST00000110687
RefSeq Acc Id: ENSMUSP00000082503   ⟸   ENSMUST00000085385
RefSeq Acc Id: ENSMUSP00000151857   ⟸   ENSMUST00000219432
RefSeq Acc Id: ENSMUSP00000151363   ⟸   ENSMUST00000219451
RefSeq Acc Id: ENSMUSP00000151705   ⟸   ENSMUST00000219323
RefSeq Acc Id: ENSMUSP00000151846   ⟸   ENSMUST00000219566
RefSeq Acc Id: ENSMUSP00000154749   ⟸   ENSMUST00000226244
RefSeq Acc Id: ENSMUSP00000151498   ⟸   ENSMUST00000220367
RefSeq Acc Id: XP_036013433   ⟸   XM_036157540
- Peptide Label: isoform X4
- UniProtKB: A0A2I3BRX9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036013435   ⟸   XM_036157542
- Peptide Label: isoform X7
- UniProtKB: A0A1W2P832 (UniProtKB/TrEMBL),   B7ZNA3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036013437   ⟸   XM_036157544
- Peptide Label: isoform X10
RefSeq Acc Id: XP_036013438   ⟸   XM_036157545
- Peptide Label: isoform X11
RefSeq Acc Id: XP_036013434   ⟸   XM_036157541
- Peptide Label: isoform X6
- UniProtKB: B7ZNA3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036013436   ⟸   XM_036157543
- Peptide Label: isoform X9
Protein Domains
Rap-GAP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6GYP7-F1-model_v2 AlphaFold Q6GYP7 1-2035 view protein structure

Promoters
RGD ID:8678304
Promoter ID:EPDNEW_M17183
Type:multiple initiation site
Name:Ralgapa1_1
Description:Mus musculus Ral GTPase activating protein, alpha subunit 1 ,transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381255,821,167 - 55,821,227EPDNEW
RGD ID:6823201
Promoter ID:MM_KWN:11686
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001003719,   NM_001112714,   NM_019994,   UC007NOV.1,   UC007NOX.1,   UC007NOY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361256,921,731 - 56,922,231 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1931050 AgrOrtholog
Ensembl Genes ENSMUSG00000021027 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000085385 ENTREZGENE
  ENSMUST00000085385.7 UniProtKB/Swiss-Prot
  ENSMUST00000110687.8 UniProtKB/Swiss-Prot
  ENSMUST00000219323.2 UniProtKB/TrEMBL
  ENSMUST00000219432 ENTREZGENE
  ENSMUST00000219432.2 UniProtKB/TrEMBL
  ENSMUST00000219451.2 UniProtKB/TrEMBL
  ENSMUST00000219566.2 UniProtKB/TrEMBL
  ENSMUST00000220367 ENTREZGENE
  ENSMUST00000220367.2 UniProtKB/TrEMBL
  ENSMUST00000226244 ENTREZGENE
  ENSMUST00000226244.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.11210 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rap/Ran-GAP_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rap_GAP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RGPA/RALGAPB_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tuberin/Ral-act_asu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:56784 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1931050 ENTREZGENE
NCBI Gene 56784 ENTREZGENE
PANTHER PTHR10063 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAL GTPASE-ACTIVATING PROTEIN SUBUNIT ALPHA-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RALGAPB_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rap_GAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ralgapa1 PhenoGen
PROSITE RAPGAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF111347 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1W2P6Q0_MOUSE UniProtKB/TrEMBL
  A0A1W2P712 ENTREZGENE, UniProtKB/TrEMBL
  A0A1W2P7P2_MOUSE UniProtKB/TrEMBL
  A0A1W2P7Y4_MOUSE UniProtKB/TrEMBL
  A0A1W2P832 ENTREZGENE, UniProtKB/TrEMBL
  A0A2I3BRX9 ENTREZGENE, UniProtKB/TrEMBL
  B7ZNA3 ENTREZGENE, UniProtKB/TrEMBL
  Q3U5E2_MOUSE UniProtKB/TrEMBL
  Q6GYP6 ENTREZGENE
  Q6GYP7 ENTREZGENE
  Q6ZQ28 ENTREZGENE
  Q8BNJ5 ENTREZGENE
  Q8C9G8 ENTREZGENE
  Q8CIW4 ENTREZGENE
  Q9D5Q4_MOUSE UniProtKB/TrEMBL
  Q9JMC4 ENTREZGENE
  RGPA1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q6GYP6 UniProtKB/Swiss-Prot
  Q6ZQ28 UniProtKB/Swiss-Prot
  Q8BNJ5 UniProtKB/Swiss-Prot
  Q8C9G8 UniProtKB/Swiss-Prot
  Q8CIW4 UniProtKB/Swiss-Prot
  Q9JMC4 UniProtKB/Swiss-Prot