Olfm3 (olfactomedin 3) - Rat Genome Database

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Gene: Olfm3 (olfactomedin 3) Mus musculus
Analyze
Symbol: Olfm3
Name: olfactomedin 3
RGD ID: 735295
MGI Page MGI
Description: Predicted to be involved in eye photoreceptor cell development and signal transduction. Located in Golgi apparatus and extracellular space. Part of AMPA glutamate receptor complex. Is expressed in brain; eye; and head. Orthologous to human OLFM3 (olfactomedin 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: B230206G02Rik; noelin-3; olfactomedin-3; opti; optimedin
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393114,697,727 - 114,919,413 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3114,697,727 - 114,919,371 (+)EnsemblGRCm39 Ensembl
GRCm383114,904,078 - 115,125,764 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3114,904,078 - 115,125,722 (+)EnsemblGRCm38mm10GRCm38
MGSCv373114,607,281 - 114,828,174 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363114,896,367 - 115,117,260 (+)NCBIMGSCv36mm8
Celera3121,320,634 - 121,550,290 (+)NCBICelera
Cytogenetic Map3F3NCBI
cM Map349.43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Optimedin: a novel olfactomedin-related protein that interacts with myocilin. Torrado M, etal., Hum Mol Genet 2002 May 15;11(11):1291-301.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:16115881   PMID:16141072   PMID:16141073   PMID:20562862   PMID:21228389   PMID:21873635  
PMID:22632720   PMID:32325033   PMID:37591201  


Genomics

Comparative Map Data
Olfm3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393114,697,727 - 114,919,413 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3114,697,727 - 114,919,371 (+)EnsemblGRCm39 Ensembl
GRCm383114,904,078 - 115,125,764 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3114,904,078 - 115,125,722 (+)EnsemblGRCm38mm10GRCm38
MGSCv373114,607,281 - 114,828,174 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363114,896,367 - 115,117,260 (+)NCBIMGSCv36mm8
Celera3121,320,634 - 121,550,290 (+)NCBICelera
Cytogenetic Map3F3NCBI
cM Map349.43NCBI
OLFM3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381101,802,560 - 101,996,926 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1101,802,560 - 101,996,926 (-)EnsemblGRCh38hg38GRCh38
GRCh371102,268,116 - 102,462,482 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361102,040,718 - 102,235,136 (-)NCBINCBI36Build 36hg18NCBI36
Build 341101,980,155 - 102,174,569NCBI
Celera1100,531,779 - 100,726,446 (-)NCBICelera
Cytogenetic Map1p21.1NCBI
HuRef1100,394,253 - 100,588,993 (-)NCBIHuRef
CHM1_11102,383,325 - 102,578,151 (-)NCBICHM1_1
T2T-CHM13v2.01101,651,747 - 101,846,150 (-)NCBIT2T-CHM13v2.0
Olfm3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82205,417,962 - 205,640,479 (+)NCBIGRCr8
mRatBN7.22202,729,610 - 202,952,120 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2202,729,936 - 202,952,112 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2210,564,351 - 210,605,852 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02208,459,085 - 208,500,592 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02203,276,106 - 203,317,607 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02217,779,983 - 218,005,710 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2217,963,456 - 218,005,509 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02235,877,518 - 236,097,064 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42211,123,148 - 211,164,325 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12211,085,901 - 211,127,076 (+)NCBI
Celera2195,446,387 - 195,487,912 (+)NCBICelera
Cytogenetic Map2q42NCBI
Olfm3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554356,462,903 - 6,655,801 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554356,464,283 - 6,655,695 (-)NCBIChiLan1.0ChiLan1.0
OLFM3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21125,034,573 - 125,230,625 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11124,192,678 - 124,387,665 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01104,451,488 - 104,651,208 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11103,168,819 - 103,364,721 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1103,168,819 - 103,364,306 (-)Ensemblpanpan1.1panPan2
OLFM3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1648,259,403 - 48,453,110 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl648,259,545 - 48,446,363 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha650,987,525 - 51,180,041 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0648,594,475 - 48,787,136 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl648,594,318 - 48,783,983 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1648,289,286 - 48,478,362 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0648,262,982 - 48,455,735 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0648,699,430 - 48,892,086 (+)NCBIUU_Cfam_GSD_1.0
Olfm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058111,968,062 - 112,174,505 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367481,773,994 - 1,821,495 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367481,773,994 - 1,979,727 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OLFM3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4116,583,630 - 116,623,933 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14116,428,889 - 116,626,134 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24128,207,126 - 128,249,667 (-)NCBISscrofa10.2Sscrofa10.2susScr3
OLFM3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12031,365,222 - 31,565,127 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2031,530,708 - 31,562,665 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603826,543,192 - 26,746,712 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Olfm3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248574,802,197 - 5,010,550 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248574,804,191 - 5,010,423 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Olfm3
8521 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1574
Count of miRNA genes:458
Interacting mature miRNAs:576
Transcripts:ENSMUST00000051309, ENSMUST00000081752, ENSMUST00000149158
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
10043955Wt10q4_mbody weight, 10 weeks, QTL 4 (mouse)Not determined398624041132624197Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398635284132635383Mouse
12792984Modn1_mmodifier of Dstn neovascularization 1 (mouse)398635284132635383Mouse
1302114Tbs1_mtuberculosis severity 1 (mouse)Not determined398924105132924250Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
26884419Bzwq6_mbi-zygomatic width QTL 6, 10 week (mouse)3100607316137205761Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101307316149805637Mouse
1301805Mors2_mmodifier of obesity related sterility 2 (mouse)Not determined3103482659137482783Mouse
1357599msrvh1_mmodifier of susceptibility to renal vascular hypertrophy/hyperplasia 1 (mouse)Not determined3107376936115624197Mouse
8655599Cia5c_mcollagen induced arthritis QTL 5c (mouse)Not determined3107376936125316237Mouse
1302093Orgwq5_morgan weight QTL 5 (mouse)Not determined3107376936147304689Mouse
1300619Cdcs1_mcytokine deficiency colitis susceptibility 1 (mouse)Not determined3109834882143835005Mouse
12910793Pwbwq7_mpost-weaning body weight QTL 7 (mouse)3110084357135715812Mouse
12910796Pwbwq6_mpost-weaning body weight QTL 6 (mouse)3110084357135715812Mouse
12910815Ogrq1_moverall growth rate QTL 1 (mouse)3110084357135715812Mouse
1301381Bomb1_mbone marrow pre-B 1 (mouse)Not determined3111133243145133417Mouse
1301100Bdt2_mbone density traits 2 (mouse)Not determined3114736617148736784Mouse

Markers in Region
RH132211  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383115,124,788 - 115,125,006UniSTSGRCm38
MGSCv373114,827,706 - 114,827,924UniSTSGRCm37
Celera3121,549,822 - 121,550,040UniSTS
Cytogenetic Map3F3UniSTS
UniSTS:224474  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383115,097,037 - 115,097,197UniSTSGRCm38
MGSCv373114,799,955 - 114,800,115UniSTSGRCm37
Celera3121,522,065 - 121,522,225UniSTS
Cytogenetic Map3F3UniSTS
Olfm3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3F3UniSTS
cM Map349.43UniSTS
Olfm3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3F3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001286750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_153157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_153458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006501418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC116411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC161527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02024149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF442824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF442825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB075757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB628879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC112422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC113129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000051309   ⟹   ENSMUSP00000060985
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3114,874,614 - 114,918,905 (+)Ensembl
GRCm38.p6 Ensembl3115,080,965 - 115,125,256 (+)Ensembl
RefSeq Acc Id: ENSMUST00000081752   ⟹   ENSMUSP00000080448
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3114,697,727 - 114,919,371 (+)Ensembl
GRCm38.p6 Ensembl3114,904,078 - 115,125,722 (+)Ensembl
RefSeq Acc Id: ENSMUST00000149158   ⟹   ENSMUSP00000121097
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3114,698,284 - 114,914,623 (+)Ensembl
GRCm38.p6 Ensembl3114,904,635 - 115,120,974 (+)Ensembl
RefSeq Acc Id: NM_001286750   ⟹   NP_001273679
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393114,698,284 - 114,919,413 (+)NCBI
GRCm383114,904,635 - 115,125,764 (+)NCBI
Celera3121,320,349 - 121,550,798 (+)NCBI
Sequence:
RefSeq Acc Id: NM_153157   ⟹   NP_694797
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393114,874,614 - 114,919,413 (+)NCBI
GRCm383115,080,965 - 115,125,764 (+)NCBI
MGSCv373114,607,281 - 114,828,174 (+)RGD
Celera3121,320,349 - 121,550,798 (+)NCBI
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_153458   ⟹   NP_703188
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393114,697,727 - 114,919,413 (+)NCBI
GRCm383114,904,078 - 115,125,764 (+)NCBI
MGSCv373114,607,281 - 114,828,174 (+)RGD
Celera3121,320,349 - 121,550,798 (+)NCBI
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006501418   ⟹   XP_006501481
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393114,698,179 - 114,918,902 (+)NCBI
GRCm383114,904,528 - 115,125,253 (+)NCBI
Sequence:
RefSeq Acc Id: NP_703188   ⟸   NM_153458
- Peptide Label: isoform A precursor
- UniProtKB: Q3UVC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_694797   ⟸   NM_153157
- Peptide Label: isoform B precursor
- UniProtKB: Q8R4K3 (UniProtKB/Swiss-Prot),   Q8QZW0 (UniProtKB/Swiss-Prot),   Q8BLL6 (UniProtKB/Swiss-Prot),   Q8BKV2 (UniProtKB/Swiss-Prot),   Q8R4K4 (UniProtKB/Swiss-Prot),   P63056 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001273679   ⟸   NM_001286750
- Peptide Label: isoform C
- UniProtKB: Q3UVC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006501481   ⟸   XM_006501418
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000060985   ⟸   ENSMUST00000051309
RefSeq Acc Id: ENSMUSP00000121097   ⟸   ENSMUST00000149158
RefSeq Acc Id: ENSMUSP00000080448   ⟸   ENSMUST00000081752
Protein Domains
Noelin   Olfactomedin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P63056-F1-model_v2 AlphaFold P63056 1-478 view protein structure

Promoters
RGD ID:6834176
Promoter ID:MM_KWN:35875
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000065812,   OTTMUST00000065814
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363114,606,921 - 114,607,421 (+)MPROMDB
RGD ID:6834173
Promoter ID:MM_KWN:35876
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver
Transcripts:NM_153157
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363114,783,331 - 114,783,831 (+)MPROMDB
RGD ID:6882150
Promoter ID:EPDNEW_M4526
Type:initiation region
Name:Olfm3_1
Description:Mus musculus olfactomedin 3 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383115,081,002 - 115,081,062EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2387329 AgrOrtholog
Ensembl Genes ENSMUSG00000027965 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000051309 ENTREZGENE
  ENSMUST00000051309.9 UniProtKB/Swiss-Prot
  ENSMUST00000081752 ENTREZGENE
  ENSMUST00000081752.13 UniProtKB/Swiss-Prot
  ENSMUST00000149158.8 UniProtKB/TrEMBL
InterPro Noelin_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Olfac-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Quino_amine_DH_bsu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:229759 UniProtKB/Swiss-Prot
MGD MGI:2387329 ENTREZGENE
NCBI Gene 229759 ENTREZGENE
PANTHER OLFACTOMEDIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR23192:SF36 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Noelin-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OLF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Olfm3 PhenoGen
PROSITE OLF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART OLF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50969 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3YTM3_MOUSE UniProtKB/TrEMBL
  NOE3_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UVC5 ENTREZGENE, UniProtKB/TrEMBL
  Q8BKV2 ENTREZGENE
  Q8BLL6 ENTREZGENE
  Q8QZW0 ENTREZGENE
  Q8R4K3 ENTREZGENE
  Q8R4K4 ENTREZGENE
UniProt Secondary Q8BKV2 UniProtKB/Swiss-Prot
  Q8BLL6 UniProtKB/Swiss-Prot
  Q8QZW0 UniProtKB/Swiss-Prot
  Q8R4K3 UniProtKB/Swiss-Prot
  Q8R4K4 UniProtKB/Swiss-Prot