Rab3c (RAB3C, member RAS oncogene family) - Rat Genome Database

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Gene: Rab3c (RAB3C, member RAS oncogene family) Mus musculus
Analyze
Symbol: Rab3c
Name: RAB3C, member RAS oncogene family
RGD ID: 732896
MGI Page MGI
Description: Enables GTP-dependent protein binding activity. Acts upstream of or within regulation of exocytosis. Located in synaptic vesicle. Is expressed in several structures, including adrenal gland; alimentary system; brain; sensory organ; and skeleton. Orthologous to human RAB3C (RAB3C, member RAS oncogene family).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2700062I01Rik; 3110015B08Rik; 3110037E15Rik; AI850886; MGC124069; ras-related protein Rab-3C; small GTP-binding protein Rab3C
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913110,190,721 - 110,417,530 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13110,190,721 - 110,417,530 (-)EnsemblGRCm39 Ensembl
GRCm3813110,054,187 - 110,280,996 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13110,054,187 - 110,280,996 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713110,844,395 - 111,070,414 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613111,181,960 - 111,400,980 (-)NCBIMGSCv36mm8
Celera13114,388,532 - 114,614,165 (-)NCBICelera
Cytogenetic Map13D2.1NCBI
cM Map1361.19NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11359932   PMID:11431472   PMID:11573517   PMID:11598194   PMID:11773082   PMID:11856727   PMID:12167638   PMID:12192047  
PMID:12477932   PMID:12578829   PMID:15159548   PMID:15269275   PMID:15935055   PMID:16141072   PMID:16141073   PMID:16436611   PMID:16923123   PMID:17124501   PMID:18287559   PMID:18625232  
PMID:19515692   PMID:19541997   PMID:19717423   PMID:19782676   PMID:19786578   PMID:20716109   PMID:21262767   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22794259   PMID:23948231  
PMID:24154525   PMID:24194600   PMID:24319055   PMID:25468937   PMID:27507650   PMID:28671696   PMID:28706196   PMID:28715412   PMID:30068389   PMID:31679900   PMID:32325033   PMID:32742255  
PMID:33542309   PMID:34321999   PMID:36808153  


Genomics

Comparative Map Data
Rab3c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913110,190,721 - 110,417,530 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13110,190,721 - 110,417,530 (-)EnsemblGRCm39 Ensembl
GRCm3813110,054,187 - 110,280,996 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13110,054,187 - 110,280,996 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713110,844,395 - 111,070,414 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613111,181,960 - 111,400,980 (-)NCBIMGSCv36mm8
Celera13114,388,532 - 114,614,165 (-)NCBICelera
Cytogenetic Map13D2.1NCBI
cM Map1361.19NCBI
RAB3C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38558,582,152 - 58,859,394 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl558,582,221 - 58,859,394 (+)EnsemblGRCh38hg38GRCh38
GRCh37557,877,979 - 58,155,221 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36557,914,696 - 58,183,163 (+)NCBINCBI36Build 36hg18NCBI36
Build 34557,914,695 - 58,183,162NCBI
Celera554,817,320 - 55,087,837 (+)NCBICelera
Cytogenetic Map5q11.2NCBI
HuRef554,835,744 - 55,104,743 (+)NCBIHuRef
CHM1_1557,878,581 - 58,147,206 (+)NCBICHM1_1
T2T-CHM13v2.0559,399,478 - 59,677,989 (+)NCBIT2T-CHM13v2.0
Rab3c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8243,353,822 - 43,577,226 (-)NCBIGRCr8
mRatBN7.2241,627,720 - 41,843,541 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl241,627,720 - 41,843,749 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx248,731,477 - 48,966,584 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0246,790,202 - 47,025,307 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0241,643,172 - 41,878,316 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0241,570,955 - 41,786,681 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl241,570,597 - 41,785,792 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0260,627,266 - 60,843,345 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4241,457,252 - 41,672,559 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1241,377,620 - 41,592,928 (-)NCBI
Celera237,457,041 - 37,671,693 (-)NCBICelera
Cytogenetic Map2q14NCBI
Rab3c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554469,343,388 - 9,578,209 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554469,335,298 - 9,577,919 (-)NCBIChiLan1.0ChiLan1.0
RAB3C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2455,061,045 - 55,339,383 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1553,214,677 - 53,493,015 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0555,150,508 - 55,428,094 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1556,787,165 - 57,063,795 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl556,795,195 - 57,062,710 (-)Ensemblpanpan1.1panPan2
RAB3C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1245,459,068 - 45,731,994 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl245,440,473 - 45,725,487 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha242,530,424 - 42,803,381 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0245,944,023 - 46,220,176 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl245,925,423 - 46,220,176 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1243,014,052 - 43,287,216 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0243,820,186 - 44,092,814 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0244,640,261 - 44,913,449 (+)NCBIUU_Cfam_GSD_1.0
Rab3c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213200,393,137 - 200,649,380 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364809,337,166 - 9,585,960 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364809,559,485 - 9,585,893 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB3C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1637,412,909 - 37,728,502 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11637,411,931 - 37,729,583 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21640,179,105 - 40,489,378 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAB3C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1454,741,211 - 55,028,023 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660493,657,742 - 3,953,967 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab3c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624759429,941 - 677,324 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624759421,978 - 678,433 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rab3c
8430 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2122
Count of miRNA genes:851
Interacting mature miRNAs:1117
Transcripts:ENSMUST00000167824
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
4141266Mol3_mmodifier of LPS-response 3 (mouse)Not determined76132600112431103Mouse
12880414V125Dq10_mvitamin D active form serum level QTL 10 (mouse)1378036508112036508Mouse
10043997Bw40_mbody weight QTL 40 (mouse)Not determined1479239045113239162Mouse
10045623Heal18_mwound healing regeneration 18 (mouse)Not determined1379239045113239162Mouse
1558741Ses10_msalmonella enteritidis susceptibility 10 (mouse)Not determined1382739968116740106Mouse
4142465Pbwg17_mpostnatal body weight growth 17 (mouse)Not determined1383876060117876256Mouse
14700691Cisaq1_mcoxsackieviral infection serum ALT QTL 1 (mouse)1386148119120461536Mouse
4140995Fbtq6_mfemoral bone trait QTL 6 (mouse)Not determined1386341617120341758Mouse
4141728Egaq4_mearly growth adjusted QTL 4 (mouse)Not determined87901985112431103Mouse
1300939Hrtfm6_mheart failure modifier 6 (mouse)Not determined1391383692120883175Mouse
1300876Tanidd2_mtally ho associated non-insulin dependednt diabetes mellitus 2 (mouse)Not determined1391965303120883175Mouse
1301142Heal2_mwound healing/regeneration 2 (mouse)Not determined1393875267120883175Mouse
4142338Skmw18_mskeletal muscle weight 18 (mouse)Not determined1394528399120883175Mouse
1558763Gct9_mgranulosa cell tumorigenesis 9 (mouse)Not determined1395036824120883175Mouse
1357468Rplag_mreduced platelet aggregation (mouse)Not determined1395502130120883175Mouse
14746974Manh75_mmandible shape 75 (mouse)1399386647120883175Mouse
4141102Sod1m_msuperoxide dismutase 1, soluble, modifier (mouse)Not determined99739968110699911Mouse
12879496Fexq2_mfear expression QTL 2 (mouse)13100741519120883175Mouse
13824989Pbsq1_mpercent broken sperm QTL 1 (mouse)13102136508112136534Mouse
4142400Tgq24_mtriglyceride QTL 24 (mouse)Not determined102602630120883175Mouse
4141826Tbqt5_mtibia bone quality traits 5 (mouse)Not determined13103341617117043216Mouse
4142334Svtms_msurvival time modifier of Sod2 (mouse)Not determined13107613580119476372Mouse
1301530Bglu2_mblood glucose level 2 (mouse)Not determined13108965303110699911Mouse
4141704Hipq1_mhyperinsulin production QTL 1 (mouse)Not determined110409487119476372Mouse

Markers in Region
Rab3c  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13D2.2UniSTS
cM Map13 UniSTS
AI850886  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3813110,061,676 - 110,061,777UniSTSGRCm38
MGSCv3713110,851,884 - 110,851,985UniSTSGRCm37
Celera13114,396,055 - 114,396,156UniSTS
Cytogenetic Map13D2.2UniSTS
Whitehead/MRC_RH13955.03UniSTS
RH141229  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3813110,054,295 - 110,054,466UniSTSGRCm38
MGSCv3713110,844,503 - 110,844,674UniSTSGRCm37
Celera13114,388,640 - 114,388,811UniSTS
Cytogenetic Map13D2.2UniSTS
D13Mit130  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3813110,272,953 - 110,273,090UniSTSGRCm38
MGSCv3713111,063,161 - 111,063,298UniSTSGRCm37
Celera13114,606,904 - 114,607,049UniSTS
Cytogenetic Map13D2.2UniSTS
cM Map1361.0UniSTS
Whitehead/MRC_RH13954.63UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001360099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_023852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB232589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC124235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC154470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF307515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF312037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ310532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY026947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC114335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ123980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT025643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000167824   ⟹   ENSMUSP00000132945
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13110,190,721 - 110,416,684 (-)Ensembl
GRCm38.p6 Ensembl13110,054,187 - 110,280,150 (-)Ensembl
RefSeq Acc Id: ENSMUST00000223922   ⟹   ENSMUSP00000153347
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13110,196,720 - 110,417,435 (-)Ensembl
GRCm38.p6 Ensembl13110,060,186 - 110,280,901 (-)Ensembl
RefSeq Acc Id: ENSMUST00000224180   ⟹   ENSMUSP00000153136
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13110,209,635 - 110,416,719 (-)Ensembl
GRCm38.p6 Ensembl13110,073,101 - 110,280,185 (-)Ensembl
RefSeq Acc Id: ENSMUST00000224287
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13110,309,291 - 110,417,530 (-)Ensembl
GRCm38.p6 Ensembl13110,172,757 - 110,280,996 (-)Ensembl
RefSeq Acc Id: ENSMUST00000226040
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13110,413,839 - 110,416,684 (-)Ensembl
GRCm38.p6 Ensembl13110,277,305 - 110,280,150 (-)Ensembl
RefSeq Acc Id: NM_001360099   ⟹   NP_001347028
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913110,190,721 - 110,417,530 (-)NCBI
GRCm3813110,054,187 - 110,280,996 (-)NCBI
Sequence:
RefSeq Acc Id: NM_023852   ⟹   NP_076341
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913110,190,721 - 110,416,740 (-)NCBI
GRCm3813110,054,187 - 110,280,206 (-)NCBI
MGSCv3713110,844,395 - 111,070,414 (-)RGD
Celera13114,388,532 - 114,614,165 (-)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006517741   ⟹   XP_006517804
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913110,190,721 - 110,417,259 (-)NCBI
GRCm3813110,054,187 - 110,280,725 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006517742   ⟹   XP_006517805
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913110,209,622 - 110,416,771 (-)NCBI
GRCm3813110,073,088 - 110,280,243 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_076341   ⟸   NM_023852
- Peptide Label: isoform 1
- UniProtKB: Q9CXQ1 (UniProtKB/Swiss-Prot),   Q63482 (UniProtKB/Swiss-Prot),   Q62974 (UniProtKB/Swiss-Prot),   Q62858 (UniProtKB/Swiss-Prot),   P62823 (UniProtKB/Swiss-Prot),   Q542T7 (UniProtKB/TrEMBL),   Q3TU26 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006517804   ⟸   XM_006517741
- Peptide Label: isoform X1
- UniProtKB: Q3TU26 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006517805   ⟸   XM_006517742
- Peptide Label: isoform X2
- UniProtKB: Q9CXS2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001347028   ⟸   NM_001360099
- Peptide Label: isoform 2
- UniProtKB: A0A286YDR2 (UniProtKB/TrEMBL),   Q3TU26 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000153347   ⟸   ENSMUST00000223922
RefSeq Acc Id: ENSMUSP00000153136   ⟸   ENSMUST00000224180
RefSeq Acc Id: ENSMUSP00000132945   ⟸   ENSMUST00000167824

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62823-F1-model_v2 AlphaFold P62823 1-227 view protein structure

Promoters
RGD ID:8681294
Promoter ID:EPDNEW_M18673
Type:initiation region
Name:Rab3c_1
Description:Mus musculus RAB3C, member RAS oncogene family , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3813110,280,150 - 110,280,210EPDNEW
RGD ID:6824280
Promoter ID:MM_KWN:15233
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NM_023852
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3613111,070,131 - 111,070,631 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914545 AgrOrtholog
Ensembl Genes ENSMUSG00000021700 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000167824 ENTREZGENE
  ENSMUST00000167824.3 UniProtKB/Swiss-Prot
  ENSMUST00000223922 ENTREZGENE
  ENSMUST00000223922.2 UniProtKB/TrEMBL
  ENSMUST00000224180 ENTREZGENE
  ENSMUST00000224180.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rab3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67295 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1914545 ENTREZGENE
NCBI Gene 67295 ENTREZGENE
PANTHER LD44762P UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-3C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ras UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rab3c PhenoGen
PRINTS RASTRNSFRMNG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A286YDR2 ENTREZGENE, UniProtKB/TrEMBL
  P62823 ENTREZGENE
  Q3TU26 ENTREZGENE, UniProtKB/TrEMBL
  Q542T7 ENTREZGENE, UniProtKB/TrEMBL
  Q62858 ENTREZGENE
  Q62974 ENTREZGENE
  Q63482 ENTREZGENE
  Q9CXQ1 ENTREZGENE
  Q9CXS2 ENTREZGENE, UniProtKB/TrEMBL
  RAB3C_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q62858 UniProtKB/Swiss-Prot
  Q62974 UniProtKB/Swiss-Prot
  Q63482 UniProtKB/Swiss-Prot
  Q9CXQ1 UniProtKB/Swiss-Prot