Surf1 (surfeit gene 1) - Rat Genome Database

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Gene: Surf1 (surfeit gene 1) Mus musculus
Analyze
Symbol: Surf1
Name: surfeit gene 1
RGD ID: 732037
MGI Page MGI
Description: Enables cytochrome-c oxidase activity. Predicted to be involved in mitochondrial cytochrome c oxidase assembly. Located in mitochondrion. Is expressed in brain; embryo; and skeletal muscle. Used to study Leigh disease. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 4K; Leigh disease; and mitochondrial complex IV deficiency nuclear type 1. Orthologous to human SURF1 (SURF1 cytochrome c oxidase assembly factor).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 0610010F23Rik; Surf; Surf-1; surfeit locus protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm17912  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39226,803,390 - 26,806,667 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl226,803,393 - 26,806,542 (-)EnsemblGRCm39 Ensembl
GRCm38226,913,378 - 26,916,610 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl226,913,381 - 26,916,530 (-)EnsemblGRCm38mm10GRCm38
MGSCv37226,768,898 - 26,772,050 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36226,735,445 - 26,738,340 (-)NCBIMGSCv36mm8
Celera226,623,123 - 26,626,275 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map219.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
mitochondrion  (HDA,IBA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. Missense mutations in SURF1 associated with deficient cytochrome c oxidase assembly in Leigh syndrome patients. Poyau A, etal., Hum Genet 2000 Feb;106(2):194-205.
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. SURF1, encoding a factor involved in the biogenesis of cytochrome c oxidase, is mutated in Leigh syndrome. Zhu Z, etal., Nat Genet. 1998 Dec;20(4):337-43.
Additional References at PubMed
PMID:2300057   PMID:2453062   PMID:2648130   PMID:3025660   PMID:3221868   PMID:8034020   PMID:8140422   PMID:8639267   PMID:8790375   PMID:8889548   PMID:10349636   PMID:10834841  
PMID:11042159   PMID:11076861   PMID:12477932   PMID:12566387   PMID:14651853   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17210671   PMID:18614015   PMID:19007875  
PMID:21167962   PMID:21267068   PMID:21723506   PMID:21873635   PMID:23241310   PMID:23838831   PMID:24911525   PMID:26804654   PMID:27208630   PMID:29660116   PMID:29696791   PMID:34473622  


Genomics

Comparative Map Data
Surf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39226,803,390 - 26,806,667 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl226,803,393 - 26,806,542 (-)EnsemblGRCm39 Ensembl
GRCm38226,913,378 - 26,916,610 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl226,913,381 - 26,916,530 (-)EnsemblGRCm38mm10GRCm38
MGSCv37226,768,898 - 26,772,050 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36226,735,445 - 26,738,340 (-)NCBIMGSCv36mm8
Celera226,623,123 - 26,626,275 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map219.1NCBI
SURF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389133,351,758 - 133,356,487 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9133,351,758 - 133,356,676 (-)EnsemblGRCh38hg38GRCh38
GRCh379136,218,613 - 136,223,363 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369135,208,487 - 135,213,182 (-)NCBINCBI36Build 36hg18NCBI36
Build 349133,248,219 - 133,252,915NCBI
Celera9106,769,152 - 106,773,840 (-)NCBICelera
Cytogenetic Map9q34.2NCBI
HuRef9105,718,581 - 105,723,261 (-)NCBIHuRef
CHM1_19136,368,824 - 136,373,504 (-)NCBICHM1_1
T2T-CHM13v2.09145,565,698 - 145,570,441 (-)NCBIT2T-CHM13v2.0
Surf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8330,639,868 - 30,642,759 (-)NCBIGRCr8
mRatBN7.2310,241,793 - 10,244,686 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl310,241,837 - 10,263,315 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx313,301,794 - 13,304,626 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0321,887,195 - 21,890,027 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0320,142,496 - 20,145,328 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.035,461,717 - 5,464,560 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl34,869,795 - 4,872,632 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0310,823,627 - 10,826,484 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.435,810,638 - 5,813,475 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.135,810,937 - 5,813,775 (-)NCBI
Celera35,039,828 - 5,042,665 (-)NCBICelera
Cytogenetic Map3p13NCBI
Surf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555132,707,951 - 2,711,566 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555132,707,877 - 2,711,606 (-)NCBIChiLan1.0ChiLan1.0
LOC100983451
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2115,996,845 - 6,001,561 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan195,999,191 - 6,003,897 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09104,475,018 - 104,479,714 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19133,085,739 - 133,088,911 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9133,085,739 - 133,088,904 (-)Ensemblpanpan1.1panPan2
SURF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1949,786,562 - 49,790,004 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl949,786,085 - 49,790,148 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha949,066,928 - 49,071,492 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0950,659,471 - 50,664,036 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl950,660,593 - 50,664,180 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1949,421,907 - 49,426,471 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0949,763,390 - 49,767,971 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0949,841,389 - 49,845,964 (-)NCBIUU_Cfam_GSD_1.0
LOC101971854
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947199,842,971 - 199,847,440 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366693,527,761 - 3,534,586 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366693,527,741 - 3,532,087 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SURF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1272,965,643 - 272,970,483 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11272,965,637 - 272,970,516 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LOC103239687
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1124,780,415 - 4,785,538 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl124,780,568 - 4,785,385 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666058203,090 - 208,286 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101710326
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247601,815,224 - 1,818,991 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247601,815,215 - 1,819,014 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Surf1
117 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1404
Count of miRNA genes:560
Interacting mature miRNAs:655
Transcripts:ENSMUST00000015934, ENSMUST00000128665, ENSMUST00000129682, ENSMUST00000129822, ENSMUST00000133513, ENSMUST00000135033, ENSMUST00000142967, ENSMUST00000147110, ENSMUST00000150776, ENSMUST00000167661, ENSMUST00000183520
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323494028179150Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
12903993Opfaq1_mopen field activity QTL 1 (mouse)2967669127022642Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
8552705Cia25_mcollagen induced arthritis 25 (mouse)Not determined22467911533523172Mouse
8552706Cia24_mcollagen induced arthritis QTL 24 (mouse)Not determined22467911533523172Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse

Markers in Region
Surf1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2A3UniSTS
cM Map215.5UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001271724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_073420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003951791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003951793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004939255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004939256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_374066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AH002086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL773563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE955575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU697260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY268659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB524655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M63746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000015934   ⟹   ENSMUSP00000015934
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl226,803,395 - 26,806,542 (-)Ensembl
GRCm38.p6 Ensembl226,913,383 - 26,916,530 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128665
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl226,804,487 - 26,805,504 (-)Ensembl
GRCm38.p6 Ensembl226,914,475 - 26,915,492 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129682   ⟹   ENSMUSP00000141918
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl226,804,870 - 26,806,344 (-)Ensembl
GRCm38.p6 Ensembl226,914,858 - 26,916,332 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129822   ⟹   ENSMUSP00000141305
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl226,803,589 - 26,806,332 (-)Ensembl
GRCm38.p6 Ensembl226,913,577 - 26,916,320 (-)Ensembl
RefSeq Acc Id: ENSMUST00000133513   ⟹   ENSMUSP00000141317
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl226,805,469 - 26,806,357 (-)Ensembl
GRCm38.p6 Ensembl226,915,457 - 26,916,345 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142967
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl226,803,393 - 26,804,771 (-)Ensembl
GRCm38.p6 Ensembl226,913,381 - 26,914,759 (-)Ensembl
RefSeq Acc Id: ENSMUST00000147110   ⟹   ENSMUSP00000141238
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl226,803,589 - 26,806,357 (-)Ensembl
GRCm38.p6 Ensembl226,913,577 - 26,916,345 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150776
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl226,804,243 - 26,806,323 (-)Ensembl
GRCm38.p6 Ensembl226,914,231 - 26,916,311 (-)Ensembl
RefSeq Acc Id: ENSMUST00000167661   ⟹   ENSMUSP00000128488
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl226,803,395 - 26,806,480 (-)Ensembl
GRCm38.p6 Ensembl226,913,383 - 26,916,468 (-)Ensembl
RefSeq Acc Id: ENSMUST00000183520   ⟹   ENSMUSP00000139112
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl226,803,395 - 26,806,312 (-)Ensembl
GRCm38.p6 Ensembl226,913,383 - 26,916,300 (-)Ensembl
RefSeq Acc Id: NM_001271724   ⟹   NP_001258653
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39226,803,390 - 26,806,542 (-)NCBI
GRCm38226,913,378 - 26,916,530 (-)NCBI
Celera226,623,123 - 26,626,275 (-)NCBI
Sequence:
RefSeq Acc Id: NM_013677   ⟹   NP_038705
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39226,803,390 - 26,806,542 (-)NCBI
GRCm38226,913,378 - 26,916,530 (-)ENTREZGENE
MGSCv37226,768,898 - 26,772,050 (-)RGD
Celera226,623,123 - 26,626,275 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_073420
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39226,803,390 - 26,806,542 (-)NCBI
GRCm38226,913,378 - 26,916,530 (-)NCBI
Celera226,623,123 - 26,626,275 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006497821   ⟹   XP_006497884
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39226,803,395 - 26,806,474 (-)NCBI
GRCm38226,913,383 - 26,916,354 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006497823   ⟹   XP_006497886
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39226,803,395 - 26,806,667 (-)NCBI
GRCm38226,913,383 - 26,916,543 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006497824   ⟹   XP_006497887
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39226,803,395 - 26,806,555 (-)NCBI
GRCm38226,913,383 - 26,916,543 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006497825   ⟹   XP_006497888
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39226,803,395 - 26,806,372 (-)NCBI
GRCm38226,913,383 - 26,916,360 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006497826   ⟹   XP_006497889
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39226,803,395 - 26,806,549 (-)NCBI
GRCm38226,913,383 - 26,916,610 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030249117   ⟹   XP_030104977
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39226,803,395 - 26,806,527 (-)NCBI
GRCm38226,913,383 - 26,916,351 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003951791
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39226,803,422 - 26,806,518 (-)NCBI
GRCm38226,913,410 - 26,916,351 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003951793
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39226,803,422 - 26,806,359 (-)NCBI
GRCm38226,913,410 - 26,916,347 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004939255
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39226,803,422 - 26,806,357 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004939256
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39226,803,422 - 26,806,370 (-)NCBI
Sequence:
RefSeq Acc Id: XR_374066
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39226,803,422 - 26,806,549 (-)NCBI
GRCm38226,913,410 - 26,916,608 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_038705   ⟸   NM_013677
- Peptide Label: isoform 1
- UniProtKB: Q99KB4 (UniProtKB/Swiss-Prot),   Q9DCU5 (UniProtKB/Swiss-Prot),   P09925 (UniProtKB/Swiss-Prot),   Q3U3J6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258653   ⟸   NM_001271724
- Peptide Label: isoform 2
- UniProtKB: Q3U3J6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006497889   ⟸   XM_006497826
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006497884   ⟸   XM_006497821
- Peptide Label: isoform X1
- UniProtKB: A0A0A6YVR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006497888   ⟸   XM_006497825
- Peptide Label: isoform X3
- UniProtKB: I6L9E0 (UniProtKB/TrEMBL),   A0A0A6YVR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006497887   ⟸   XM_006497824
- Peptide Label: isoform X3
- UniProtKB: I6L9E0 (UniProtKB/TrEMBL),   A0A0A6YVR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006497886   ⟸   XM_006497823
- Peptide Label: isoform X2
- UniProtKB: A0A0A6YVR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030104977   ⟸   XM_030249117
- Peptide Label: isoform X3
- UniProtKB: I6L9E0 (UniProtKB/TrEMBL),   A0A0A6YVR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000139112   ⟸   ENSMUST00000183520
RefSeq Acc Id: ENSMUSP00000141238   ⟸   ENSMUST00000147110
RefSeq Acc Id: ENSMUSP00000141317   ⟸   ENSMUST00000133513
RefSeq Acc Id: ENSMUSP00000015934   ⟸   ENSMUST00000015934
RefSeq Acc Id: ENSMUSP00000141918   ⟸   ENSMUST00000129682
RefSeq Acc Id: ENSMUSP00000141305   ⟸   ENSMUST00000129822
RefSeq Acc Id: ENSMUSP00000128488   ⟸   ENSMUST00000167661

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P09925-F1-model_v2 AlphaFold P09925 1-306 view protein structure

Promoters
RGD ID:6832886
Promoter ID:MM_KWN:28314
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000027521
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36226,769,071 - 26,770,457 (-)MPROMDB
RGD ID:6832885
Promoter ID:MM_KWN:28315
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4
Transcripts:OTTMUST00000027520
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36226,770,291 - 26,770,791 (-)MPROMDB
RGD ID:6832882
Promoter ID:MM_KWN:28316
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   Brain,   Liver,   Lung,   MEF_B6
Transcripts:NM_013677,   OTTMUST00000027513,   OTTMUST00000027514,   OTTMUST00000027515,   OTTMUST00000027516,   OTTMUST00000027517,   OTTMUST00000027518,   OTTMUST00000027519,   UC008IWG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36226,771,686 - 26,772,186 (-)MPROMDB
RGD ID:6876730
Promoter ID:EPDNEW_M1816
Type:multiple initiation site
Name:Surf1_1
Description:Mus musculus surfeit gene 1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38226,916,348 - 26,916,408EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98443 AgrOrtholog
Ensembl Genes ENSMUSG00000015790 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000015934 ENTREZGENE
  ENSMUST00000015934.13 UniProtKB/Swiss-Prot
  ENSMUST00000129682.2 UniProtKB/TrEMBL
  ENSMUST00000129822.8 UniProtKB/TrEMBL
  ENSMUST00000133513.2 UniProtKB/TrEMBL
  ENSMUST00000147110 ENTREZGENE
  ENSMUST00000147110.8 UniProtKB/TrEMBL
  ENSMUST00000167661 ENTREZGENE
  ENSMUST00000167661.7 UniProtKB/TrEMBL
  ENSMUST00000183520 ENTREZGENE
  ENSMUST00000183520.8 UniProtKB/TrEMBL
InterPro Surf1/Shy1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Surf1/Surf4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20930 UniProtKB/Swiss-Prot
MGD MGI:98443 ENTREZGENE
NCBI Gene 20930 ENTREZGENE
PANTHER PTHR23427 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SURFEIT LOCUS PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SURF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Surf1 PhenoGen
PROSITE SURF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A6YVR9 ENTREZGENE, UniProtKB/TrEMBL
  A0A0A6YVX3_MOUSE UniProtKB/TrEMBL
  A0A0A6YVY3_MOUSE UniProtKB/TrEMBL
  A0A0A6YXB3_MOUSE UniProtKB/TrEMBL
  A0A0R4J232_MOUSE UniProtKB/TrEMBL
  I6L9E0 ENTREZGENE, UniProtKB/TrEMBL
  P09925 ENTREZGENE
  Q3U3J6 ENTREZGENE, UniProtKB/TrEMBL
  Q99KB4 ENTREZGENE
  Q9DCU5 ENTREZGENE
  SURF1_MOUSE UniProtKB/Swiss-Prot
  V9GXE6_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q99KB4 UniProtKB/Swiss-Prot
  Q9DCU5 UniProtKB/Swiss-Prot