Cnn3 (calponin 3, acidic) - Rat Genome Database

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Gene: Cnn3 (calponin 3, acidic) Mus musculus
Analyze
Symbol: Cnn3
Name: calponin 3, acidic
RGD ID: 731964
MGI Page MGI
Description: Predicted to enable actin filament binding activity and microtubule binding activity. Predicted to be involved in actin filament organization. Predicted to be located in cytosol; dendritic spine; and neuronal cell body. Predicted to be active in actin cytoskeleton; glutamatergic synapse; and postsynapse. Is expressed in several structures, including body cavity or lining; dentate gyrus subgranular zone; genitourinary system; respiratory system; and vertebral axis musculature. Orthologous to human CNN3 (calponin 3).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 1600014M03Rik; C85854; Ca; Calpo3; calponin, acidic isoform; calponin-3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm17935   Gm17936   Gm17937   Gm17945   Gm4815  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393121,220,190 - 121,251,854 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3121,220,146 - 121,251,856 (+)EnsemblGRCm39 Ensembl
GRCm383121,426,541 - 121,458,205 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3121,426,497 - 121,458,207 (+)EnsemblGRCm38mm10GRCm38
MGSCv373121,129,459 - 121,161,123 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363121,418,564 - 121,450,228 (+)NCBIMGSCv36mm8
Celera3127,782,383 - 127,824,521 (+)NCBICelera
Cytogenetic Map3G1NCBI
cM Map352.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1-chloro-2,4-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
7,12-dimethyltetraphene  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
antimycin A  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Brodifacoum  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
captan  (EXP)
carbamazepine  (ISO)
carbon nanotube  (EXP)
chlorpyrifos  (EXP)
chromium(6+)  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
CU-O LINKAGE  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP,ISO)
dichlorine  (ISO)
diethylstilbestrol  (ISO)
diuron  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (EXP)
ethanol  (ISO)
folic acid  (EXP)
folpet  (EXP)
gentamycin  (ISO)
hyaluronic acid  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
iron atom  (ISO)
iron(0)  (ISO)
ivermectin  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
N-nitrosodiethylamine  (ISO)
ochratoxin A  (EXP)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
p-toluidine  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
PhIP  (ISO)
pirinixic acid  (EXP)
piroxicam  (ISO)
rotenone  (ISO)
selenium atom  (ISO)
sodium dichromate  (EXP,ISO)
Soman  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tebufenpyrad  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
thioacetamide  (ISO)
topotecan  (ISO)
trichostatin A  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
zearalenone  (EXP)
zinc atom  (ISO)
zinc sulfate  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10512203   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11591653   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15489334   PMID:15618518  
PMID:15782199   PMID:15840001   PMID:16107646   PMID:16141072   PMID:16141073   PMID:16458080   PMID:17332066   PMID:17967808   PMID:18287559   PMID:18799693   PMID:20181831   PMID:20534673  
PMID:20861310   PMID:21267068   PMID:21327095   PMID:21873635   PMID:22083510   PMID:22922362   PMID:23276748   PMID:23375831   PMID:24154525   PMID:24457600   PMID:26046660   PMID:27113764  
PMID:28106071   PMID:29151265   PMID:30457570   PMID:31162944   PMID:31992794   PMID:32325033   PMID:34133714   PMID:36293380  


Genomics

Comparative Map Data
Cnn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393121,220,190 - 121,251,854 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3121,220,146 - 121,251,856 (+)EnsemblGRCm39 Ensembl
GRCm383121,426,541 - 121,458,205 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3121,426,497 - 121,458,207 (+)EnsemblGRCm38mm10GRCm38
MGSCv373121,129,459 - 121,161,123 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363121,418,564 - 121,450,228 (+)NCBIMGSCv36mm8
Celera3127,782,383 - 127,824,521 (+)NCBICelera
Cytogenetic Map3G1NCBI
cM Map352.94NCBI
CNN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38194,896,957 - 94,927,110 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl194,896,949 - 94,927,223 (-)EnsemblGRCh38hg38GRCh38
GRCh37195,362,513 - 95,392,666 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36195,135,095 - 95,165,289 (-)NCBINCBI36Build 36hg18NCBI36
Build 34195,074,529 - 95,104,722NCBI
Celera193,616,973 - 93,647,200 (-)NCBICelera
Cytogenetic Map1p21.3NCBI
HuRef193,484,336 - 93,514,531 (-)NCBIHuRef
CHM1_1195,477,311 - 95,507,534 (-)NCBICHM1_1
T2T-CHM13v2.0194,745,314 - 94,775,463 (-)NCBIT2T-CHM13v2.0
Cnn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82212,203,661 - 212,234,772 (+)NCBIGRCr8
mRatBN7.22209,518,948 - 209,550,107 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2209,518,948 - 209,550,104 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2217,181,924 - 217,213,028 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02215,089,643 - 215,120,749 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02209,931,377 - 209,962,475 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02225,005,069 - 225,036,179 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2225,005,019 - 225,036,188 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02243,044,080 - 243,075,234 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42218,044,803 - 218,075,914 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12218,007,864 - 218,038,976 (+)NCBI
Celera2201,950,953 - 201,982,114 (+)NCBICelera
Cytogenetic Map2q42NCBI
Cnn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543580,185 - 89,766 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543580,185 - 89,216 (-)NCBIChiLan1.0ChiLan1.0
CNN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21132,096,906 - 132,127,207 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11131,251,606 - 131,281,812 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0197,558,652 - 97,588,791 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1196,286,015 - 96,316,249 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl196,286,015 - 96,316,249 (-)Ensemblpanpan1.1panPan2
CNN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1654,378,031 - 54,405,009 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl654,368,162 - 54,404,201 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha657,077,741 - 57,105,796 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0654,751,458 - 54,778,564 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl654,743,775 - 54,778,564 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1654,425,310 - 54,453,361 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0654,409,986 - 54,438,043 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0654,862,633 - 54,890,718 (+)NCBIUU_Cfam_GSD_1.0
Cnn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058104,609,983 - 104,638,951 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365374,308,951 - 4,337,998 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365374,308,951 - 4,337,990 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4122,504,433 - 122,528,348 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14122,504,450 - 122,528,351 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24134,245,269 - 134,269,263 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CNN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12038,325,810 - 38,356,563 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2038,325,848 - 38,356,760 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603379,710,142 - 79,740,641 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cnn3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247422,737,057 - 2,767,273 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247422,737,131 - 2,767,026 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cnn3
1268 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:213
Count of miRNA genes:190
Interacting mature miRNAs:199
Transcripts:ENSMUST00000029773
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300619Cdcs1_mcytokine deficiency colitis susceptibility 1 (mouse)Not determined3109834882143835005Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
1301381Bomb1_mbone marrow pre-B 1 (mouse)Not determined3111133243145133417Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
1301100Bdt2_mbone density traits 2 (mouse)Not determined3114736617148736784Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
1302151Lprm2_mlymphoproliferation modifier 2 (mouse)Not determined3119778857153779044Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1302093Orgwq5_morgan weight QTL 5 (mouse)Not determined3107376936147304689Mouse
1302114Tbs1_mtuberculosis severity 1 (mouse)Not determined398924105132924250Mouse
1301805Mors2_mmodifier of obesity related sterility 2 (mouse)Not determined3103482659137482783Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
1558868Ses9_msalmonella enteritidis susceptibility 9 (mouse)Not determined3119057332153057456Mouse
4142449Tgq14_mtriglyceride QTL 14 (mouse)Not determined119318586153318586Mouse
4141935Tgq15_mtriglyceride QTL 15 (mouse)Not determined119318586153318586Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
8655599Cia5c_mcollagen induced arthritis QTL 5c (mouse)Not determined3107376936125316237Mouse
10043919Afpq8_mabdominal fat percent QTL 8 (mouse)Not determined3119057332153057456Mouse
10043955Wt10q4_mbody weight, 10 weeks, QTL 4 (mouse)Not determined398624041132624197Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
10412240Alpq6_malcohol preference QTL 6 (mouse)Not determined3120772078154772078Mouse
12910796Pwbwq6_mpost-weaning body weight QTL 6 (mouse)3110084357135715812Mouse
12910815Ogrq1_moverall growth rate QTL 1 (mouse)3110084357135715812Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
12792984Modn1_mmodifier of Dstn neovascularization 1 (mouse)398635284132635383Mouse
12910793Pwbwq7_mpost-weaning body weight QTL 7 (mouse)3110084357135715812Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398635284132635383Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
26884419Bzwq6_mbi-zygomatic width QTL 6, 10 week (mouse)3100607316137205761Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101307316149805637Mouse

Markers in Region
RH127238  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383121,457,909 - 121,458,131UniSTSGRCm38
MGSCv373121,160,827 - 121,161,049UniSTSGRCm37
Celera3127,824,225 - 127,824,447UniSTS
Cytogenetic Map3G1UniSTS
RH128022  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383121,457,391 - 121,457,593UniSTSGRCm38
MGSCv373121,160,309 - 121,160,511UniSTSGRCm37
Celera3127,823,707 - 127,823,909UniSTS
Cytogenetic Map3G1UniSTS
Cnn3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381398,613,429 - 98,613,602UniSTSGRCm38
MGSCv371399,383,384 - 99,383,557UniSTSGRCm37
Celera13102,267,282 - 102,267,455UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map13D1UniSTS
cM Map3 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_028044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC105336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000029773   ⟹   ENSMUSP00000029773
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3121,220,146 - 121,251,856 (+)Ensembl
GRCm38.p6 Ensembl3121,426,497 - 121,458,207 (+)Ensembl
RefSeq Acc Id: ENSMUST00000196671
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3121,244,654 - 121,251,003 (+)Ensembl
GRCm38.p6 Ensembl3121,451,005 - 121,457,354 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197135   ⟹   ENSMUSP00000142526
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3121,220,419 - 121,251,460 (+)Ensembl
GRCm38.p6 Ensembl3121,426,770 - 121,457,811 (+)Ensembl
RefSeq Acc Id: ENSMUST00000198393   ⟹   ENSMUSP00000143186
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3121,243,415 - 121,250,792 (+)Ensembl
GRCm38.p6 Ensembl3121,449,766 - 121,457,143 (+)Ensembl
RefSeq Acc Id: ENSMUST00000198620   ⟹   ENSMUSP00000143122
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3121,250,733 - 121,251,596 (+)Ensembl
GRCm38.p6 Ensembl3121,457,084 - 121,457,947 (+)Ensembl
RefSeq Acc Id: ENSMUST00000198649
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3121,220,931 - 121,244,007 (+)Ensembl
GRCm38.p6 Ensembl3121,427,282 - 121,450,358 (+)Ensembl
RefSeq Acc Id: ENSMUST00000199188
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3121,220,194 - 121,251,848 (+)Ensembl
GRCm38.p6 Ensembl3121,426,545 - 121,458,199 (+)Ensembl
RefSeq Acc Id: ENSMUST00000199499   ⟹   ENSMUSP00000143159
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3121,250,762 - 121,251,598 (+)Ensembl
GRCm38.p6 Ensembl3121,457,113 - 121,457,949 (+)Ensembl
RefSeq Acc Id: NM_028044   ⟹   NP_082320
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393121,220,190 - 121,251,854 (+)NCBI
GRCm383121,426,541 - 121,458,205 (+)ENTREZGENE
MGSCv373121,129,459 - 121,161,123 (+)RGD
Celera3127,782,383 - 127,824,521 (+)RGD
cM Map3 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_082320   ⟸   NM_028044
- UniProtKB: Q3TW23 (UniProtKB/Swiss-Prot),   Q9DAW9 (UniProtKB/Swiss-Prot),   A0A0G2JDV8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000143122   ⟸   ENSMUST00000198620
RefSeq Acc Id: ENSMUSP00000143186   ⟸   ENSMUST00000198393
RefSeq Acc Id: ENSMUSP00000142526   ⟸   ENSMUST00000197135
RefSeq Acc Id: ENSMUSP00000029773   ⟸   ENSMUST00000029773
RefSeq Acc Id: ENSMUSP00000143159   ⟸   ENSMUST00000199499
Protein Domains
Calponin-homology (CH)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9DAW9-F1-model_v2 AlphaFold Q9DAW9 1-330 view protein structure

Promoters
RGD ID:6833587
Promoter ID:MM_KWN:35943
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000029773
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363121,129,076 - 121,129,792 (+)MPROMDB
RGD ID:6882228
Promoter ID:EPDNEW_M4565
Type:initiation region
Name:Cnn3_1
Description:Mus musculus calponin 3, acidic , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4566  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383121,426,519 - 121,426,579EPDNEW
RGD ID:6882230
Promoter ID:EPDNEW_M4566
Type:initiation region
Name:Cnn3_2
Description:Mus musculus calponin 3, acidic , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4565  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383121,449,753 - 121,449,813EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919244 AgrOrtholog
Ensembl Genes ENSMUSG00000053931 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000029773 ENTREZGENE
  ENSMUST00000029773.13 UniProtKB/Swiss-Prot
  ENSMUST00000197135.5 UniProtKB/TrEMBL
  ENSMUST00000198393.2 UniProtKB/TrEMBL
  ENSMUST00000198620.2 UniProtKB/TrEMBL
  ENSMUST00000199499.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Calponin/LIMCH1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Calponin_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH-domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM22_calponin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:71994 UniProtKB/Swiss-Prot
MGD MGI:1919244 ENTREZGENE
NCBI Gene 71994 ENTREZGENE
PANTHER CALPONIN UniProtKB/Swiss-Prot
  CALPONIN UniProtKB/Swiss-Prot
  CALPONIN UniProtKB/TrEMBL
  CALPONIN UniProtKB/TrEMBL
  TRANSGELIN UniProtKB/TrEMBL
Pfam Calponin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00307 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cnn3 PhenoGen
PRINTS CALPONIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM22CALPONIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CALPONIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CALPONIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50021 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00033 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47576 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JDV8 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2JFC8_MOUSE UniProtKB/TrEMBL
  A0A0G2JFG3_MOUSE UniProtKB/TrEMBL
  A0A0G2JFI6_MOUSE UniProtKB/TrEMBL
  CNN3_MOUSE UniProtKB/Swiss-Prot
  Q3TW23 ENTREZGENE
  Q99JN5_MOUSE UniProtKB/TrEMBL
  Q9DAW9 ENTREZGENE
UniProt Secondary Q3TW23 UniProtKB/Swiss-Prot