Spdya (speedy/RINGO cell cycle regulator family, member A) - Rat Genome Database

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Gene: Spdya (speedy/RINGO cell cycle regulator family, member A) Mus musculus
Analyze
Symbol: Spdya
Name: speedy/RINGO cell cycle regulator family, member A
RGD ID: 731526
MGI Page MGI
Description: Enables protein kinase activator activity and protein kinase binding activity. Involved in male meiotic nuclear division. Acts upstream of or within several processes, including chromosome organization; establishment of protein localization to telomere; and spermatogenesis. Located in XY body; chromosome, telomeric region; and nuclear envelope. Is expressed in reproductive system. Orthologous to human SPDYA (speedy/RINGO cell cycle regulator family member A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4921517J08Rik; 4930548B21Rik; GS4; MLZ-465; mSpy/Ringo A; protein expressed in male leptotene and zygotene spermatocytes 465; rapid inducer of G2/M progression in oocytes A; RINGO A; Spd; Spdy1; speedy A; speedy A1; speedy A2; speedy homolog 1; speedy homolog A; speedy protein A; speedy-1; speedy/ringo; spermatogenesis related protein Gs4; spy1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391771,833,890 - 71,896,528 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1771,859,056 - 71,896,528 (+)EnsemblGRCm39 Ensembl
GRCm381771,526,895 - 71,589,533 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1771,552,061 - 71,589,533 (+)EnsemblGRCm38mm10GRCm38
MGSCv371771,901,401 - 71,938,873 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361771,456,918 - 71,493,531 (+)NCBIMGSCv36mm8
MGSCv361770,692,103 - 70,728,732 (+)NCBIMGSCv36mm8
Celera1775,827,774 - 75,865,225 (+)NCBICelera
Cytogenetic Map17E1.3NCBI
cM Map1741.87NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11730327   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15611625   PMID:16141072   PMID:16141073   PMID:18287559  
PMID:18483240   PMID:20339383   PMID:21267068   PMID:21491542   PMID:21873635   PMID:22844512   PMID:23894536   PMID:24576537   PMID:27025256   PMID:28031483   PMID:30630676   PMID:30718482  
PMID:31350280   PMID:31574533   PMID:31829284   PMID:33075054   PMID:34039995   PMID:34174788   PMID:36443440  


Genomics

Comparative Map Data
Spdya
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391771,833,890 - 71,896,528 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1771,859,056 - 71,896,528 (+)EnsemblGRCm39 Ensembl
GRCm381771,526,895 - 71,589,533 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1771,552,061 - 71,589,533 (+)EnsemblGRCm38mm10GRCm38
MGSCv371771,901,401 - 71,938,873 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361771,456,918 - 71,493,531 (+)NCBIMGSCv36mm8
MGSCv361770,692,103 - 70,728,732 (+)NCBIMGSCv36mm8
Celera1775,827,774 - 75,865,225 (+)NCBICelera
Cytogenetic Map17E1.3NCBI
cM Map1741.87NCBI
SPDYA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38228,810,834 - 28,850,610 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl228,782,517 - 28,850,611 (+)EnsemblGRCh38hg38GRCh38
GRCh37229,033,700 - 29,073,476 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36228,887,221 - 28,926,980 (+)NCBINCBI36Build 36hg18NCBI36
Build 34228,945,367 - 28,985,124NCBI
Celera228,882,807 - 28,918,487 (+)NCBICelera
Cytogenetic Map2p23.2NCBI
HuRef228,775,655 - 28,815,604 (+)NCBIHuRef
CHM1_1228,963,754 - 29,003,797 (+)NCBICHM1_1
T2T-CHM13v2.0228,854,444 - 28,894,219 (+)NCBIT2T-CHM13v2.0
Spdya
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8629,619,415 - 29,675,030 (-)NCBIGRCr8
mRatBN7.2623,905,574 - 23,954,926 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl623,910,223 - 23,954,850 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx624,209,795 - 24,254,449 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0624,525,671 - 24,570,329 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0624,014,621 - 24,059,309 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0623,493,686 - 23,543,236 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl623,498,511 - 23,543,172 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0633,364,979 - 33,410,506 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4624,016,267 - 24,060,920 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1624,019,221 - 24,063,873 (-)NCBI
Celera623,409,397 - 23,454,049 (-)NCBICelera
Cytogenetic Map6q14NCBI
Spdya
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546910,687,519 - 10,744,808 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546910,687,519 - 10,744,808 (+)NCBIChiLan1.0ChiLan1.0
SPDYA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21297,655,882 - 97,696,047 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A97,659,855 - 97,700,019 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A28,817,415 - 28,857,149 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A28,897,109 - 28,936,165 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A28,897,109 - 28,936,165 (+)Ensemblpanpan1.1panPan2
SPDYA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11722,708,202 - 22,742,855 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1722,708,307 - 22,742,291 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1722,502,755 - 22,537,402 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01723,271,040 - 23,305,751 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1723,271,145 - 23,305,187 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11722,570,320 - 22,605,001 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01722,622,899 - 22,657,554 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01722,739,064 - 22,773,738 (+)NCBIUU_Cfam_GSD_1.0
Spdya
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629266,870,372 - 66,903,557 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364933,935,146 - 3,969,053 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364933,937,297 - 3,967,884 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPDYA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3110,396,886 - 110,433,572 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13110,397,844 - 110,433,250 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23117,220,428 - 117,261,217 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SPDYA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11478,756,606 - 78,792,788 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604533,345,609 - 33,379,890 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spdya
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473810,742,667 - 10,790,176 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473810,742,668 - 10,790,243 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Spdya
2438 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:512
Count of miRNA genes:245
Interacting mature miRNAs:271
Transcripts:ENSMUST00000064420, ENSMUST00000124001, ENSMUST00000144142, ENSMUST00000167641
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
1300592Pcyts5_mplasmacytoma susceptibility 5 (mouse)Not determined173871288772712970Mouse
10755525Lymph2_mlymphocyte differential 2 (mouse)173880562672805626Mouse
10755534Lymph4_mlymphocyte differential 4 (mouse)173880562672805626Mouse
4141319Hmtb8_mhemostasis and thrombosis rebleeding time 8 (mouse)Not determined4053444774534623Mouse
15039324Nmrs48_mNAFLD-associated magnetic resonance shift 48 (mouse)174093918774939187Mouse
26884428Cvht3_mcranial vault height 3, 5 week (mouse)174651092682407429Mouse
1357754Ahl3_mage related hearing loss 3 (mouse)Not determined175020395784204103Mouse
4141879Chlq9_mcirculating hormone level QTL 9 (mouse)Not determined175175842585758612Mouse
1357532Bmch7_mbone mechanical trait 7 (mouse)Not determined175175842585758612Mouse
1357447Heal13_mwound healing/regeneration 13 (mouse)Not determined175710765191107803Mouse
4141758Pstc5_mperiosteal circumference 5 (mouse)Not determined175710765191107803Mouse
4141011Bmd26_mbone mineral density 26 (mouse)Not determined175710765191107803Mouse
1300735Pgia20_mproteoglycan induced arthritis 20 (mouse)Not determined175710765191107803Mouse
12910536Nrq8a_mnoise-induced hearing loss resistant QTL 8a (mouse)175710765191107803Mouse
12910537Nrq8_mnoise-induced hearing loss resistant QTL 8 (mouse)175710765191107803Mouse
4142201Obrq15_mobesity resistance QTL 15 (mouse)Not determined5753444780885776Mouse
4142414Pregq4_mpregnancy QTL 4 (mouse)Not determined175753444793507179Mouse
4141040Hmtb9_mhemostasis and thrombosis rebleeding time 9 (mouse)Not determined5758908991589197Mouse
1301107Scc4_mcolon tumor susceptibility 4 (mouse)Not determined176230101095294699Mouse
11528551Sluc32_msusceptibility to lung cancer 32 (mouse)176230101095294699Mouse
1302017Aliq3_macute lung injury QTL 3 (mouse)Not determined176388554895294699Mouse
1301728Ffal1_mfree fatty acid level 1 (mouse)Not determined176521493895294699Mouse
14928308Manh82_mmandible shape 82 (mouse)176631524395294699Mouse
13464254Ifvrq3_minfluenza virus resistance QTL 3 (mouse)176795765583908089Mouse
4142256Nilac12_mnicotine induced locomotor activity 12 (mouse)Not determined176894131995294699Mouse
11039500Ltpr7c_mLeishmania tropica response 7c (mouse)177070119895294699Mouse
11039498Ltpr7b_mLeishmania tropica response 7b (mouse)177070119895294699Mouse
11039499Ltpr7a_mLeishmania tropica response 7a (mouse)177070119895294699Mouse
11039514Ltpr7_mLeishmania tropica response 7 (mouse)177070119895294699Mouse
11565819Ppipq1_mprepulse inhibition percentage QTL 1 (mouse)177105765575377655Mouse

Markers in Region
D10Mit52.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381771,575,382 - 71,575,515UniSTSGRCm38
GRCm381033,707,123 - 33,707,257UniSTSGRCm38
MGSCv371033,426,929 - 33,427,063UniSTSGRCm37
MGSCv371771,924,722 - 71,924,855UniSTSGRCm37
Celera1775,850,959 - 75,851,092UniSTS
Celera1034,617,202 - 34,617,336UniSTS
Cytogenetic Map17E1.3UniSTS
cM Map1023.0UniSTS
cM Map10 UniSTS
Whitehead Genetic1017.5UniSTS
UniSTS:237689  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381771,594,419 - 71,594,670UniSTSGRCm38
MGSCv371771,943,759 - 71,944,010UniSTSGRCm37
Celera1775,870,551 - 75,870,802UniSTS
Cytogenetic Map17E1.3UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000064420   ⟹   ENSMUSP00000063214
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1771,859,067 - 71,896,528 (+)Ensembl
GRCm38.p6 Ensembl1771,552,072 - 71,589,533 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124001   ⟹   ENSMUSP00000118426
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1771,859,056 - 71,885,695 (+)Ensembl
GRCm38.p6 Ensembl1771,552,061 - 71,578,700 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144142   ⟹   ENSMUSP00000118994
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1771,863,253 - 71,895,669 (+)Ensembl
GRCm38.p6 Ensembl1771,556,258 - 71,588,674 (+)Ensembl
RefSeq Acc Id: ENSMUST00000167641   ⟹   ENSMUSP00000125912
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1771,859,056 - 71,896,528 (+)Ensembl
GRCm38.p6 Ensembl1771,552,061 - 71,589,533 (+)Ensembl
RefSeq Acc Id: NM_001142631   ⟹   NP_001136103
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391771,859,056 - 71,885,695 (+)NCBI
GRCm381771,552,061 - 71,578,700 (+)NCBI
MGSCv371771,901,401 - 71,938,873 (+)RGD
Celera1775,827,774 - 75,865,225 (+)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_029254   ⟹   NP_083530
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391771,859,056 - 71,896,528 (+)NCBI
GRCm381771,552,061 - 71,589,533 (+)NCBI
MGSCv371771,901,401 - 71,938,873 (+)RGD
Celera1775,827,774 - 75,865,225 (+)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006524907   ⟹   XP_006524970
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391771,859,149 - 71,896,051 (+)NCBI
GRCm381771,552,154 - 71,589,056 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006524908   ⟹   XP_006524971
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391771,859,149 - 71,896,051 (+)NCBI
GRCm381771,552,154 - 71,589,056 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006524909   ⟹   XP_006524972
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391771,858,986 - 71,896,051 (+)NCBI
GRCm381771,551,991 - 71,589,056 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011246602   ⟹   XP_011244904
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391771,833,890 - 71,896,051 (+)NCBI
GRCm381771,526,895 - 71,589,056 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_083530   ⟸   NM_029254
- Peptide Label: isoform 1
- UniProtKB: Q5IBH8 (UniProtKB/Swiss-Prot),   B8JJC0 (UniProtKB/Swiss-Prot),   Q8C5T5 (UniProtKB/Swiss-Prot),   Q5IBH7 (UniProtKB/Swiss-Prot),   B8JJB9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001136103   ⟸   NM_001142631
- Peptide Label: isoform 2
- UniProtKB: B2RWC8 (UniProtKB/TrEMBL),   B8JJB9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524972   ⟸   XM_006524909
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006524971   ⟸   XM_006524908
- Peptide Label: isoform X1
- UniProtKB: Q5IBH8 (UniProtKB/Swiss-Prot),   B8JJC0 (UniProtKB/Swiss-Prot),   Q8C5T5 (UniProtKB/Swiss-Prot),   Q5IBH7 (UniProtKB/Swiss-Prot),   B8JJB9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524970   ⟸   XM_006524907
- Peptide Label: isoform X1
- UniProtKB: Q5IBH8 (UniProtKB/Swiss-Prot),   B8JJC0 (UniProtKB/Swiss-Prot),   Q8C5T5 (UniProtKB/Swiss-Prot),   Q5IBH7 (UniProtKB/Swiss-Prot),   B8JJB9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011244904   ⟸   XM_011246602
- Peptide Label: isoform X1
- UniProtKB: Q5IBH8 (UniProtKB/Swiss-Prot),   B8JJC0 (UniProtKB/Swiss-Prot),   Q8C5T5 (UniProtKB/Swiss-Prot),   Q5IBH7 (UniProtKB/Swiss-Prot),   B8JJB9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000118426   ⟸   ENSMUST00000124001
RefSeq Acc Id: ENSMUSP00000118994   ⟸   ENSMUST00000144142
RefSeq Acc Id: ENSMUSP00000125912   ⟸   ENSMUST00000167641
RefSeq Acc Id: ENSMUSP00000063214   ⟸   ENSMUST00000064420

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5IBH7-F1-model_v2 AlphaFold Q5IBH7 1-310 view protein structure

Promoters
RGD ID:13676726
Promoter ID:EPDNEW_M22512
Type:multiple initiation site
Name:Spdya_2
Description:Mus musculus speedy/RINGO cell cycle regulator family, memberA , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22513  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381771,526,900 - 71,526,960EPDNEW
RGD ID:13676728
Promoter ID:EPDNEW_M22513
Type:initiation region
Name:Spdya_1
Description:Mus musculus speedy/RINGO cell cycle regulator family, memberA , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22512  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381771,552,061 - 71,552,121EPDNEW
RGD ID:6828713
Promoter ID:MM_KWN:24144
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung
Transcripts:NM_001142631,   NM_029254,   UC008DMN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361771,901,171 - 71,901,671 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1918141 AgrOrtholog
Ensembl Genes ENSMUSG00000052525 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000064420.12 UniProtKB/TrEMBL
  ENSMUST00000124001 ENTREZGENE
  ENSMUST00000124001.8 UniProtKB/Swiss-Prot
  ENSMUST00000144142 ENTREZGENE
  ENSMUST00000144142.2 UniProtKB/Swiss-Prot
  ENSMUST00000167641 ENTREZGENE
  ENSMUST00000167641.8 UniProtKB/Swiss-Prot
InterPro Speedy UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:70891 UniProtKB/Swiss-Prot
MGD MGI:1918141 ENTREZGENE
NCBI Gene 70891 ENTREZGENE
PANTHER SEEDY PROTEIN A/C FAMILY MEMBER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPEEDY PROTEIN A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Spy1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Spdya PhenoGen
UniProt B2RWC8 ENTREZGENE, UniProtKB/TrEMBL
  B8JJB9 ENTREZGENE, UniProtKB/TrEMBL
  B8JJC0 ENTREZGENE
  Q5IBH7 ENTREZGENE
  Q5IBH8 ENTREZGENE
  Q8C5T5 ENTREZGENE
  SPDYA_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary B8JJC0 UniProtKB/Swiss-Prot
  Q5IBH8 UniProtKB/Swiss-Prot
  Q8C5T5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-06-30 Spdya  speedy/RINGO cell cycle regulator family, member A    speedy homolog A (Xenopus laevis)  Symbol and/or name change 5135510 APPROVED