Rbmyf8 (RNA binding motif protein Y-linked family member 8) - Rat Genome Database

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Gene: Rbmyf8 (RNA binding motif protein Y-linked family member 8) Mus musculus
Analyze
No known orthologs.
Symbol: Rbmyf8
Name: RNA binding motif protein Y-linked family member 8
RGD ID: 7180521
MGI Page MGI
Description: Predicted to be involved in male gonad development. Predicted to be located in nucleolus and nucleoplasm. Orthologous to human RBMY1B (RNA binding motif protein Y-linked family 1 member B).
Type: protein-coding
RefSeq Status: PREDICTED
Previously known as: Gm21708; Rbm; Rbmy1a1; RNA-binding motif protein 1; RNA-binding motif protein, Y chromosome, family 1 member; RNA-binding motif protein, Y chromosome, family 1 member A1; uncharacterized protein LOC100862398; Y chromosome RNA recognition motif 1
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39Y3,399,184 - 3,410,167 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblY3,399,188 - 3,410,167 (-)EnsemblGRCm39 Ensembl
GRCm38Y3,399,184 - 3,410,167 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblY3,399,188 - 3,410,167 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic MapYpterNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (ISO)
nucleoplasm  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rbmyf8
2 total Variants
Markers in Region
G65761  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapYA1UniSTS
RbmY1a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapYA1UniSTS
Rbmy1a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapYA1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001270516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC160968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000180310   ⟹   ENSMUSP00000137266
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblY3,399,545 - 3,407,067 (-)Ensembl
GRCm38.p6 EnsemblY3,399,545 - 3,407,067 (-)Ensembl
RefSeq Acc Id: ENSMUST00000188091   ⟹   ENSMUSP00000140216
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblY3,399,191 - 3,410,167 (-)Ensembl
GRCm38.p6 EnsemblY3,399,191 - 3,410,167 (-)Ensembl
RefSeq Acc Id: ENSMUST00000190283   ⟹   ENSMUSP00000139659
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblY3,399,188 - 3,410,148 (-)Ensembl
GRCm38.p6 EnsemblY3,399,188 - 3,410,148 (-)Ensembl
RefSeq Acc Id: NM_001270516   ⟹   NP_001257445
RefSeq Status: PREDICTED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39Y3,399,184 - 3,410,167 (-)NCBI
GRCm38Y3,399,184 - 3,410,167 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001257445   ⟸   NM_001270516
- UniProtKB: E9Q856 (UniProtKB/Swiss-Prot),   O35698 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000139659   ⟸   ENSMUST00000190283
RefSeq Acc Id: ENSMUSP00000140216   ⟸   ENSMUST00000188091
RefSeq Acc Id: ENSMUSP00000137266   ⟸   ENSMUST00000180310
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O35698-F1-model_v2 AlphaFold O35698 1-380 view protein structure

Promoters
RGD ID:13681908
Promoter ID:EPDNEW_M25103
Type:initiation region
Name:Rbmy_1
Description:Mus musculus RNA binding motif protein, Y chromosome , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38Y3,410,169 - 3,410,229EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:5435063 AgrOrtholog
Ensembl Genes ENSMUSG00000093918 UniProtKB/Swiss-Prot
  ENSMUSG00000093987 UniProtKB/Swiss-Prot
  ENSMUSG00000094658 UniProtKB/Swiss-Prot
  ENSMUSG00000095948 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000100360.5 UniProtKB/Swiss-Prot
  ENSMUST00000169382.3 UniProtKB/Swiss-Prot
  ENSMUST00000171534.8 UniProtKB/Swiss-Prot
  ENSMUST00000179508.2 UniProtKB/Swiss-Prot
  ENSMUST00000180310.2 UniProtKB/Swiss-Prot
  ENSMUST00000187277.7 UniProtKB/Swiss-Prot
  ENSMUST00000188091 ENTREZGENE
  ENSMUST00000188091.7 UniProtKB/Swiss-Prot
  ENSMUST00000189592.7 UniProtKB/Swiss-Prot
  ENSMUST00000190283.7 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot
  RBD_domain_sf UniProtKB/Swiss-Prot
  RRM_dom UniProtKB/Swiss-Prot
KEGG Report mmu:100862365 UniProtKB/Swiss-Prot
  mmu:100862394 UniProtKB/Swiss-Prot
  mmu:100862398 UniProtKB/Swiss-Prot
  mmu:19657 UniProtKB/Swiss-Prot
MGD MGI:5435063 ENTREZGENE
NCBI Gene Gm21708 ENTREZGENE
PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER A1-RELATED UniProtKB/Swiss-Prot
  TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED UniProtKB/Swiss-Prot
Pfam RRM_1 UniProtKB/Swiss-Prot
PhenoGen Rbmyf8 PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot
SMART RRM UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot
UniProt E9Q856 ENTREZGENE
  O35698 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary E9Q856 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-12 Rbmyf8  RNA binding motif protein Y-linked family member 8  Gm21708  predicted gene, 21708  Symbol and/or name updated 27372883 PROVISIONAL