4930432M17Rik (RIKEN cDNA 4930432M17 gene) - Rat Genome Database

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Gene: 4930432M17Rik (RIKEN cDNA 4930432M17 gene) Mus musculus
Analyze
Symbol: 4930432M17Rik
Name: RIKEN cDNA 4930432M17 gene
RGD ID: 5686134
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: uncharacterized protein LOC619318
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393121,464,412 - 121,476,631 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3121,464,411 - 121,476,631 (+)EnsemblGRCm39 Ensembl
GRCm383121,670,763 - 121,682,982 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3121,670,762 - 121,682,982 (+)EnsemblGRCm38mm10GRCm38
MGSCv373121,373,681 - 121,385,900 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363121,662,786 - 121,675,005 (+)NCBIMGSCv36mm8
Celera3128,043,893 - 128,056,126 (+)NCBICelera
Cytogenetic Map3G1NCBI
cM Map352.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in 4930432M17Rik
521 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:88
Count of miRNA genes:88
Interacting mature miRNAs:88
Transcripts:ENSMUST00000098646
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300619Cdcs1_mcytokine deficiency colitis susceptibility 1 (mouse)Not determined3109834882143835005Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
1301381Bomb1_mbone marrow pre-B 1 (mouse)Not determined3111133243145133417Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
1301100Bdt2_mbone density traits 2 (mouse)Not determined3114736617148736784Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
1302151Lprm2_mlymphoproliferation modifier 2 (mouse)Not determined3119778857153779044Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1302093Orgwq5_morgan weight QTL 5 (mouse)Not determined3107376936147304689Mouse
1302114Tbs1_mtuberculosis severity 1 (mouse)Not determined398924105132924250Mouse
1301805Mors2_mmodifier of obesity related sterility 2 (mouse)Not determined3103482659137482783Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
1558868Ses9_msalmonella enteritidis susceptibility 9 (mouse)Not determined3119057332153057456Mouse
4142449Tgq14_mtriglyceride QTL 14 (mouse)Not determined119318586153318586Mouse
4141935Tgq15_mtriglyceride QTL 15 (mouse)Not determined119318586153318586Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
8655599Cia5c_mcollagen induced arthritis QTL 5c (mouse)Not determined3107376936125316237Mouse
10043919Afpq8_mabdominal fat percent QTL 8 (mouse)Not determined3119057332153057456Mouse
10043955Wt10q4_mbody weight, 10 weeks, QTL 4 (mouse)Not determined398624041132624197Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
10412240Alpq6_malcohol preference QTL 6 (mouse)Not determined3120772078154772078Mouse
12910796Pwbwq6_mpost-weaning body weight QTL 6 (mouse)3110084357135715812Mouse
12910815Ogrq1_moverall growth rate QTL 1 (mouse)3110084357135715812Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
12792984Modn1_mmodifier of Dstn neovascularization 1 (mouse)398635284132635383Mouse
12910793Pwbwq7_mpost-weaning body weight QTL 7 (mouse)3110084357135715812Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398635284132635383Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
26884419Bzwq6_mbi-zygomatic width QTL 6, 10 week (mouse)3100607316137205761Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101307316149805637Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000098646   ⟹   ENSMUSP00000096243
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3121,464,966 - 121,476,484 (+)Ensembl
GRCm38.p6 Ensembl3121,671,317 - 121,682,835 (+)Ensembl
RefSeq Acc Id: ENSMUST00000196899   ⟹   ENSMUSP00000143360
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3121,464,411 - 121,476,631 (+)Ensembl
GRCm38.p6 Ensembl3121,670,762 - 121,682,982 (+)Ensembl
RefSeq Acc Id: NR_177942
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393121,464,412 - 121,476,631 (+)NCBI
Protein Sequences
GenBank Protein BAE21384 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: ENSMUSP00000143360   ⟸   ENSMUST00000196899
RefSeq Acc Id: ENSMUSP00000096243   ⟸   ENSMUST00000098646

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3V0W9-F1-model_v2 AlphaFold Q3V0W9 1-174 view protein structure


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000074248 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000196899 ENTREZGENE
MGD MGI:3588188 ENTREZGENE
NCBI Gene 4930432M17Rik ENTREZGENE
PhenoGen 4930432M17Rik PhenoGen
RNAcentral URS00025E3503 RNACentral
UniProt Q3V0W9_MOUSE UniProtKB/TrEMBL