Gm5108 (predicted gene 5108) - Rat Genome Database

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Gene: Gm5108 (predicted gene 5108) Mus musculus
Analyze
Symbol: Gm5108
Name: predicted gene 5108
RGD ID: 5685978
MGI Page MGI
Description:
Type: protein-coding (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: EG330097; uncharacterized protein LOC330097
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39568,099,012 - 68,134,413 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl568,099,012 - 68,134,413 (+)EnsemblGRCm39 Ensembl
GRCm38567,941,669 - 67,977,070 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl567,941,669 - 67,977,070 (+)EnsemblGRCm38mm10GRCm38
MGSCv37568,332,908 - 68,368,309 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36568,220,804 - 68,256,205 (+)NCBIMGSCv36mm8
Celera565,232,978 - 65,268,368 (+)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map536.46NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Gm5108
1089 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:86
Count of miRNA genes:84
Interacting mature miRNAs:86
Transcripts:ENSMUST00000177891
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
1301845Lxw4_mlupus BXSB x NZW 4 (mouse)Not determined53569446269694594Mouse
11049561Lmr24e_mleishmaniasis resistance 24e (mouse)53569446269694594Mouse
11049559Lmr24c_mleishmaniasis resistance 24c (mouse)53569446269694594Mouse
11049558Lmr24b_mleishmaniasis resistance 24b (mouse)53569446269694594Mouse
1301223Hdlq7_mHDL QTL 7 (mouse)Not determined53585456869854714Mouse
13464252Ahl10_mage related hearing loss, early onset 10 (mouse)53585456869854714Mouse
4141647Hrvhf1_mheart rate variability, high frequency 1 (mouse)Not determined3643342370433423Mouse
1301170Lith13_mlithogenic gene 13 (mouse)Not determined53649448670494598Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
13464246Ahl11_mage related hearing loss, early onset 11 (mouse)53764377771643896Mouse
1300951Gbvq1_mgallstone bladder volume QTL 1 (mouse)Not determined53811168172111798Mouse
13464245Ahl12_mage related hearing loss, early onset 12 (mouse)53811168172111798Mouse
1301698Pcfm4_mperiosteal circumference and femur length 4 (mouse)Not determined54458584378585965Mouse
13207584Mwmlpt4_mMorris water maze latency to platform, training, 4 (mouse)54632260680322606Mouse
13207588Mwmlpa4_mMorris water maze latency to platform, all, 4 (mouse)54632260680322606Mouse
14746981Manh57_mmandible shape 57 (mouse)54716974281169742Mouse
11041665Lmr24_mleishmaniasis resistance 24 (mouse)552694462107321041Mouse
11041899Lmr24a_mleishmaniasis resistance 24a (mouse)552694462107321041Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
1301243Bmd2_mbone mineral density 2 (mouse)Not determined555388334100455525Mouse
4142317Rgcs1_mretinal ganglion cell susceptible 1 (mouse)Not determined55388334108762627Mouse
13464248Ahl13_mage related hearing loss, early onset 13 (mouse)55564587489645995Mouse
10043962Obq27_mobesity QTL 27 (mouse)Not determined55628565590285655Mouse
10044005Ahl7_mage related hearing loss 7 (mouse)Not determined55833050292330641Mouse
11040591Lmr3c_mleishmaniasis resistance 3c (mouse)55960280193602980Mouse
11040592Lmr3d_mleishmaniasis resistance 3d (mouse)55960280193602980Mouse
11040589Lmr3a_mleishmaniasis resistance 3a (mouse)55960280193602980Mouse
11040590Lmr3b_mleishmaniasis resistance 3b (mouse)55960280193602980Mouse
1301843Listr1_mlisteriosis resistance 1 (mouse)Not determined56024608194246203Mouse
13464247Ahl14_mage related hearing loss, early onset 14 (mouse)56040306294403160Mouse
11252124Modvl6_mmodifier of vacuolated lens 6 (mouse)56265056896650688Mouse
4142428Modvl1_mmodifier of vacuolated lens 1 (mouse)Not determined6265056896650688Mouse
1301010ahl2_mage related hearing loss 2 (mouse)Not determined56265056896650688Mouse
13464250Ahl15_mage related hearing loss, early onset 15 (mouse)56265056896650688Mouse
10045972Tir5_mtrypanosome infection response 5 (mouse)Not determined563705442104387065Mouse
11049560Lmr24d_mleishmaniasis resistance 24d (mouse)56437487798374996Mouse
12904739M2fscn2_mmodifier 2 of FSCN2 (mouse)566529661100529661Mouse
12904740M1fscn2_mmodifier 1 of Fscn2 (mouse)566529661100529661Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000177891   ⟹   ENSMUSP00000137034
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl568,099,012 - 68,134,413 (+)Ensembl
GRCm38.p6 Ensembl567,941,669 - 67,977,070 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201736
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl568,099,082 - 68,134,343 (+)Ensembl
GRCm38.p6 Ensembl567,941,739 - 67,977,000 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201798
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl568,099,082 - 68,134,348 (+)Ensembl
GRCm38.p6 Ensembl567,941,739 - 67,977,005 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202730
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl568,099,012 - 68,134,413 (+)Ensembl
GRCm38.p6 Ensembl567,941,669 - 67,977,070 (+)Ensembl
RefSeq Acc Id: NM_001256184   ⟹   NP_001243113
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39568,099,012 - 68,134,413 (+)NCBI
GRCm38567,941,669 - 67,977,070 (+)ENTREZGENE
Celera565,232,978 - 65,268,368 (+)ENTREZGENE
cM Map5 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001243113 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001243113   ⟸   NM_001256184
- UniProtKB: J3QP01 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000137034   ⟸   ENSMUST00000177891

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-J3QP01-F1-model_v2 AlphaFold J3QP01 1-101 view protein structure


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000094719 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000202730 ENTREZGENE
MGD MGI:3645064 ENTREZGENE
NCBI Gene Gm5108 ENTREZGENE
PhenoGen Gm5108 PhenoGen
UniProt J3QP01 ENTREZGENE