MIR9-2HG (MIR9-2 host gene) - Rat Genome Database

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Gene: MIR9-2HG (MIR9-2 host gene) Homo sapiens
Analyze
Symbol: MIR9-2HG (Ensembl: LINC00461)
Name: MIR9-2 host gene (Ensembl:long intergenic non-protein coding RNA 461)
RGD ID: 5484684
HGNC Page HGNC:42810
Description: Predicted to be involved in miRNA-mediated post-transcriptional gene silencing. Predicted to be part of RISC complex.
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: REVIEWED
Previously known as: ECONEXIN; EyeLinc1; LINC00461; long intergenic non-protein coding RNA 461; NDIME; VISC; Visc-1a; Visc-1b; Visc-2
RGD Orthologs
Mouse
Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38588,538,266 - 88,691,041 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl588,507,546 - 88,691,057 (-)EnsemblGRCh38hg38GRCh38
GRCh37587,834,084 - 87,986,858 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36587,871,743 - 88,010,012 (-)NCBINCBI36Build 36hg18NCBI36
Celera583,729,558 - 83,873,577 (-)NCBICelera
Cytogenetic Map5q14.3NCBI
HuRef583,040,988 - 83,185,511 (-)NCBIHuRef
CHM1_1587,269,636 - 87,413,656 (-)NCBICHM1_1
T2T-CHM13v2.0589,019,338 - 89,172,172 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
RISC complex  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:8889549   PMID:12477932   PMID:14702039   PMID:16344560   PMID:20195357   PMID:21060863   PMID:23562822   PMID:24861553   PMID:25201988   PMID:25209608   PMID:25392693  
PMID:28368417   PMID:29137410   PMID:30409700   PMID:30623482   PMID:30879766   PMID:31545458   PMID:31858544   PMID:31934717   PMID:31967713   PMID:31972361   PMID:33233986   PMID:35272621  


Genomics

Comparative Map Data
MIR9-2HG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38588,538,266 - 88,691,041 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl588,507,546 - 88,691,057 (-)EnsemblGRCh38hg38GRCh38
GRCh37587,834,084 - 87,986,858 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36587,871,743 - 88,010,012 (-)NCBINCBI36Build 36hg18NCBI36
Celera583,729,558 - 83,873,577 (-)NCBICelera
Cytogenetic Map5q14.3NCBI
HuRef583,040,988 - 83,185,511 (-)NCBIHuRef
CHM1_1587,269,636 - 87,413,656 (-)NCBICHM1_1
T2T-CHM13v2.0589,019,338 - 89,172,172 (-)NCBIT2T-CHM13v2.0
Mir9-2hg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391383,869,500 - 83,889,427 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1383,863,381 - 84,100,589 (+)EnsemblGRCm39 Ensembl
GRCm381383,721,381 - 83,741,308 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1383,721,381 - 83,884,194 (+)EnsemblGRCm38mm10GRCm38
MGSCv371383,867,711 - 83,875,274 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361384,212,082 - 84,215,335 (+)NCBIMGSCv36mm8
Celera1385,985,072 - 85,990,318 (+)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1343.68NCBI
Mir9-2hg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8215,909,918 - 16,100,226 (+)NCBIGRCr8
mRatBN7.2214,174,288 - 14,363,747 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl214,179,651 - 14,200,268 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map2q11NCBI

Variants

.
Variants in MIR9-2HG
42 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 5q14.3-21.1(chr5:85966055-101335711)x1 copy number loss See cases [RCV000135748] Chr5:85966055..101335711 [GRCh38]
Chr5:85261873..100671415 [GRCh37]
Chr5:85297629..100699314 [NCBI36]
Chr5:5q14.3-21.1
pathogenic
GRCh38/hg38 5q14.3(chr5:87191898-89957449)x1 copy number loss See cases [RCV000135596] Chr5:87191898..89957449 [GRCh38]
Chr5:86487715..89253266 [GRCh37]
Chr5:86523471..89289022 [NCBI36]
Chr5:5q14.3
pathogenic
GRCh38/hg38 5q14.3-15(chr5:88197732-93193163)x3 copy number gain See cases [RCV000136732] Chr5:88197732..93193163 [GRCh38]
Chr5:87493549..92528869 [GRCh37]
Chr5:87529305..92554625 [NCBI36]
Chr5:5q14.3-15
pathogenic
GRCh38/hg38 5q14.3-22.1(chr5:84603580-111435081)x1 copy number loss See cases [RCV000139656] Chr5:84603580..111435081 [GRCh38]
Chr5:83899398..110770779 [GRCh37]
Chr5:83935154..110798678 [NCBI36]
Chr5:5q14.3-22.1
pathogenic
GRCh38/hg38 5q14.3(chr5:86766959-92148845)x1 copy number loss See cases [RCV000141419] Chr5:86766959..92148845 [GRCh38]
Chr5:86062776..91444662 [GRCh37]
Chr5:86098532..91480418 [NCBI36]
Chr5:5q14.3
pathogenic
GRCh38/hg38 5q14.3(chr5:88368289-92363231)x1 copy number loss See cases [RCV000140963] Chr5:88368289..92363231 [GRCh38]
Chr5:87664106..91698938 [GRCh37]
Chr5:87699862..91724694 [NCBI36]
Chr5:5q14.3
pathogenic
GRCh38/hg38 5q14.3(chr5:85876480-88958682)x1 copy number loss See cases [RCV000051010] Chr5:85876480..88958682 [GRCh38]
Chr5:85172298..88254499 [GRCh37]
Chr5:85208054..88290255 [NCBI36]
Chr5:5q14.3
pathogenic
GRCh38/hg38 5q14.3-21.1(chr5:87376883-101524443)x1 copy number loss See cases [RCV000050945] Chr5:87376883..101524443 [GRCh38]
Chr5:86672700..100860147 [GRCh37]
Chr5:86708456..100888046 [NCBI36]
Chr5:5q14.3-21.1
pathogenic
GRCh38/hg38 5q13.3-22.1(chr5:74163186-110809453)x3 copy number gain See cases [RCV000051839] Chr5:74163186..110809453 [GRCh38]
Chr5:73459011..110145153 [GRCh37]
Chr5:73494767..110173052 [NCBI36]
Chr5:5q13.3-22.1
pathogenic
GRCh38/hg38 5q14.3-15(chr5:87124838-93383020)x3 copy number gain See cases [RCV000051840] Chr5:87124838..93383020 [GRCh38]
Chr5:86420655..92718726 [GRCh37]
Chr5:86456411..92744482 [NCBI36]
Chr5:5q14.3-15
pathogenic
GRCh38/hg38 5q14.3(chr5:86343721-88779835)x1 copy number loss See cases [RCV000053475] Chr5:86343721..88779835 [GRCh38]
Chr5:85639539..88075652 [GRCh37]
Chr5:85675295..88111408 [NCBI36]
Chr5:5q14.3
pathogenic
GRCh38/hg38 5q14.3(chr5:86743723-92337264)x1 copy number loss See cases [RCV000053477] Chr5:86743723..92337264 [GRCh38]
Chr5:86039540..91633081 [GRCh37]
Chr5:86075296..91668837 [NCBI36]
Chr5:5q14.3
pathogenic
GRCh38/hg38 5q14.3-15(chr5:88189536-93784597)x1 copy number loss Intellectual disability, autosomal dominant 20 [RCV003327617] Chr5:88189536..93784597 [GRCh38]
Chr5:5q14.3-15
pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2215
Count of miRNA genes:812
Interacting mature miRNAs:959
Transcripts:ENST00000500197, ENST00000502301, ENST00000504246, ENST00000505030, ENST00000506014, ENST00000506664, ENST00000506978, ENST00000508885, ENST00000509265, ENST00000509405, ENST00000509783, ENST00000511014, ENST00000513026, ENST00000513805, ENST00000513893, ENST00000515885
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
AFMa224we5  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37587,979,099 - 87,979,244UniSTSGRCh37
Build 36588,014,855 - 88,015,000RGDNCBI36
Celera583,872,058 - 83,872,201RGD
Cytogenetic Map5q14.3UniSTS
HuRef583,183,980 - 83,184,123UniSTS
Whitehead-RH Map5295.0UniSTS
Whitehead-YAC Contig Map5 UniSTS
NCBI RH Map5565.3UniSTS
RH66334  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37587,975,974 - 87,976,127UniSTSGRCh37
Build 36588,011,730 - 88,011,883RGDNCBI36
Celera583,868,933 - 83,869,086RGD
Cytogenetic Map5q14.3UniSTS
HuRef583,180,855 - 83,181,008UniSTS
GeneMap99-GB4 RH Map5402.95UniSTS
SHGC-145106  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37587,857,058 - 87,857,330UniSTSGRCh37
Build 36587,892,814 - 87,893,086RGDNCBI36
Celera583,750,018 - 83,750,290RGD
Cytogenetic Map5q14.3UniSTS
HuRef583,061,450 - 83,061,722UniSTS
TNG Radiation Hybrid Map538015.0UniSTS
D5S1558E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37587,960,888 - 87,961,030UniSTSGRCh37
Build 36587,996,644 - 87,996,786RGDNCBI36
Celera583,853,845 - 83,853,987RGD
Cytogenetic Map5q14.3UniSTS
HuRef583,165,787 - 83,165,929UniSTS
A008L33  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37587,962,236 - 87,962,362UniSTSGRCh37
Build 36587,997,992 - 87,998,118RGDNCBI36
Celera583,855,193 - 83,855,319RGD
Cytogenetic Map5q14.3UniSTS
HuRef583,167,135 - 83,167,261UniSTS
GeneMap99-GB4 RH Map5401.24UniSTS
WI-19356  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37587,975,943 - 87,976,146UniSTSGRCh37
Build 36588,011,699 - 88,011,902RGDNCBI36
Celera583,868,902 - 83,869,105RGD
Cytogenetic Map5q14.3UniSTS
HuRef583,180,824 - 83,181,027UniSTS
GeneMap99-GB4 RH Map5402.95UniSTS
Whitehead-RH Map5296.5UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component
High
Medium 1 2 1 6 1 5 4 1507 2 3 9
Low 606 59 222 2 292 2 706 168 1945 42 243 86 2 1 3 617
Below cutoff 1640 2168 953 267 891 116 2730 1675 236 190 1067 982 154 871 1607 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NR_015436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_024383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_024384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_152232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_152233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_152234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_152235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_152236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_152237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_152238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_152239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_152240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_152241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_152242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA082758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC008525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC008526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC012604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC026701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK055372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK091356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK308694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK309800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK311230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC036480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC047100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM661956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA122372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA217450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA493278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA495096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA778665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA783765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA807261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA807977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB490657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC320345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF573702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000500197
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,664,445 - 88,673,339 (-)Ensembl
RefSeq Acc Id: ENST00000502301
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,540,728 - 88,678,445 (-)Ensembl
RefSeq Acc Id: ENST00000504246
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,666,320 - 88,684,825 (-)Ensembl
RefSeq Acc Id: ENST00000505030
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,664,445 - 88,673,724 (-)Ensembl
RefSeq Acc Id: ENST00000506014
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,540,727 - 88,678,445 (-)Ensembl
RefSeq Acc Id: ENST00000506664
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,540,528 - 88,678,449 (-)Ensembl
RefSeq Acc Id: ENST00000506978
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,507,546 - 88,684,808 (-)Ensembl
RefSeq Acc Id: ENST00000508885
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,540,513 - 88,659,841 (-)Ensembl
RefSeq Acc Id: ENST00000509265
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,664,464 - 88,685,047 (-)Ensembl
RefSeq Acc Id: ENST00000509405
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,540,510 - 88,684,958 (-)Ensembl
RefSeq Acc Id: ENST00000509783
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,666,297 - 88,684,806 (-)Ensembl
RefSeq Acc Id: ENST00000511014
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,664,446 - 88,684,980 (-)Ensembl
RefSeq Acc Id: ENST00000513026
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,666,302 - 88,678,448 (-)Ensembl
RefSeq Acc Id: ENST00000513805
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,540,510 - 88,673,339 (-)Ensembl
RefSeq Acc Id: ENST00000513893
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,667,342 - 88,691,041 (-)Ensembl
RefSeq Acc Id: ENST00000515885
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,666,302 - 88,672,746 (-)Ensembl
RefSeq Acc Id: ENST00000652822
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,682,732 - 88,684,723 (-)Ensembl
RefSeq Acc Id: ENST00000655936
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,681,993 - 88,684,722 (-)Ensembl
RefSeq Acc Id: ENST00000656755
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,539,420 - 88,673,328 (-)Ensembl
RefSeq Acc Id: ENST00000658935
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,664,501 - 88,684,784 (-)Ensembl
RefSeq Acc Id: ENST00000659156
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,540,542 - 88,673,322 (-)Ensembl
RefSeq Acc Id: ENST00000661688
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,665,383 - 88,672,972 (-)Ensembl
RefSeq Acc Id: ENST00000662060
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,536,316 - 88,647,241 (-)Ensembl
RefSeq Acc Id: ENST00000662146
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,666,302 - 88,673,319 (-)Ensembl
RefSeq Acc Id: ENST00000662192
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,533,810 - 88,673,325 (-)Ensembl
RefSeq Acc Id: ENST00000663276
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,664,480 - 88,691,057 (-)Ensembl
RefSeq Acc Id: ENST00000663994
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,657,819 - 88,659,864 (-)Ensembl
RefSeq Acc Id: ENST00000664240
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,535,335 - 88,685,032 (-)Ensembl
RefSeq Acc Id: ENST00000665062
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,537,243 - 88,684,958 (-)Ensembl
RefSeq Acc Id: ENST00000665865
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,537,248 - 88,673,429 (-)Ensembl
RefSeq Acc Id: ENST00000666195
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,664,485 - 88,678,473 (-)Ensembl
RefSeq Acc Id: ENST00000666297
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,539,624 - 88,659,835 (-)Ensembl
RefSeq Acc Id: ENST00000666342
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,664,457 - 88,684,746 (-)Ensembl
RefSeq Acc Id: ENST00000668089
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,539,365 - 88,611,949 (-)Ensembl
RefSeq Acc Id: ENST00000669424
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,533,837 - 88,684,681 (-)Ensembl
RefSeq Acc Id: ENST00000670494
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,533,903 - 88,611,957 (-)Ensembl
RefSeq Acc Id: ENST00000671230
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,669,173 - 88,673,306 (-)Ensembl
RefSeq Acc Id: ENST00000685902
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,690,589 - 88,690,988 (-)Ensembl
RefSeq Acc Id: ENST00000687262
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,540,510 - 88,678,449 (-)Ensembl
RefSeq Acc Id: ENST00000688094
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,690,589 - 88,690,988 (-)Ensembl
RefSeq Acc Id: ENST00000689967
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,540,456 - 88,690,983 (-)Ensembl
RefSeq Acc Id: ENST00000692551
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,540,540 - 88,677,728 (-)Ensembl
RefSeq Acc Id: ENST00000692902
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,690,589 - 88,691,041 (-)Ensembl
RefSeq Acc Id: ENST00000700760
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,540,512 - 88,666,844 (-)Ensembl
RefSeq Acc Id: ENST00000701425
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,540,514 - 88,691,033 (-)Ensembl
RefSeq Acc Id: ENST00000701556
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,540,510 - 88,673,318 (-)Ensembl
RefSeq Acc Id: ENST00000702076
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,540,536 - 88,684,803 (-)Ensembl
RefSeq Acc Id: NR_015436
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38588,538,266 - 88,684,825 (-)NCBI
GRCh37587,836,597 - 87,980,620 (-)ENTREZGENE
HuRef583,040,988 - 83,185,511 (-)ENTREZGENE
CHM1_1587,269,636 - 87,413,656 (-)NCBI
T2T-CHM13v2.0589,019,338 - 89,165,960 (-)NCBI
Sequence:
RefSeq Acc Id: NR_024383
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38588,664,445 - 88,678,448 (-)NCBI
GRCh37587,836,597 - 87,980,620 (-)ENTREZGENE
HuRef583,040,988 - 83,185,511 (-)ENTREZGENE
CHM1_1587,393,310 - 87,407,300 (-)NCBI
T2T-CHM13v2.0589,145,576 - 89,159,581 (-)NCBI
Sequence:
RefSeq Acc Id: NR_024384
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38588,664,445 - 88,673,339 (-)NCBI
GRCh37587,836,597 - 87,980,620 (-)ENTREZGENE
HuRef583,040,988 - 83,185,511 (-)ENTREZGENE
CHM1_1587,393,310 - 87,402,194 (-)NCBI
T2T-CHM13v2.0589,145,576 - 89,154,471 (-)NCBI
Sequence:
RefSeq Acc Id: NR_152232
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38588,664,445 - 88,691,041 (-)NCBI
T2T-CHM13v2.0589,145,576 - 89,172,172 (-)NCBI
Sequence:
RefSeq Acc Id: NR_152233
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38588,664,445 - 88,691,041 (-)NCBI
T2T-CHM13v2.0589,145,576 - 89,172,172 (-)NCBI
Sequence:
RefSeq Acc Id: NR_152234
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38588,664,445 - 88,684,825 (-)NCBI
T2T-CHM13v2.0589,145,576 - 89,165,960 (-)NCBI
Sequence:
RefSeq Acc Id: NR_152235
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38588,538,266 - 88,684,825 (-)NCBI
T2T-CHM13v2.0589,019,338 - 89,165,960 (-)NCBI
Sequence:
RefSeq Acc Id: NR_152236
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38588,664,445 - 88,684,825 (-)NCBI
T2T-CHM13v2.0589,145,576 - 89,165,960 (-)NCBI
Sequence:
RefSeq Acc Id: NR_152237
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38588,664,445 - 88,684,825 (-)NCBI
T2T-CHM13v2.0589,145,576 - 89,165,960 (-)NCBI
Sequence:
RefSeq Acc Id: NR_152238
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38588,538,266 - 88,678,448 (-)NCBI
T2T-CHM13v2.0589,019,338 - 89,159,581 (-)NCBI
Sequence:
RefSeq Acc Id: NR_152239
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38588,538,266 - 88,678,448 (-)NCBI
T2T-CHM13v2.0589,019,338 - 89,159,581 (-)NCBI
Sequence:
RefSeq Acc Id: NR_152240
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38588,664,445 - 88,676,298 (-)NCBI
T2T-CHM13v2.0589,145,576 - 89,157,434 (-)NCBI
Sequence:
RefSeq Acc Id: NR_152241
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38588,664,445 - 88,673,339 (-)NCBI
T2T-CHM13v2.0589,145,576 - 89,154,471 (-)NCBI
Sequence:
RefSeq Acc Id: NR_152242
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38588,538,266 - 88,673,339 (-)NCBI
T2T-CHM13v2.0589,019,338 - 89,154,471 (-)NCBI
Sequence:
Promoters
RGD ID:6803336
Promoter ID:HG_KWN:50634
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid,   NB4
Transcripts:NR_024384,   UC010JAY.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36588,004,716 - 88,005,216 (-)MPROMDB
RGD ID:15095900
Promoter ID:EPDNEWNC_H742
Type:initiation region
Name:LINC00461_1
Description:long intergenic non-protein coding RNA 461 [Source:HGNCSymbol;Acc:HGNC:42810]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38588,611,736 - 88,611,796EPDNEWNC
RGD ID:15095901
Promoter ID:EPDNEWNC_H743
Type:initiation region
Name:LINC00461_4
Description:long intergenic non-protein coding RNA 461 [Source:HGNCSymbol;Acc:HGNC:42810]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38588,659,838 - 88,659,898EPDNEWNC
RGD ID:15095902
Promoter ID:EPDNEWNC_H745
Type:initiation region
Name:LINC00461_5
Description:long intergenic non-protein coding RNA 461 [Source:HGNCSymbol;Acc:HGNC:42810]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38588,678,450 - 88,678,510EPDNEWNC
RGD ID:15095905
Promoter ID:EPDNEWNC_H746
Type:initiation region
Name:LINC00461_2
Description:long intergenic non-protein coding RNA 461 [Source:HGNCSymbol;Acc:HGNC:42810]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38588,684,958 - 88,685,018EPDNEWNC
RGD ID:15095910
Promoter ID:EPDNEWNC_H747
Type:initiation region
Name:LINC00461_3
Description:long intergenic non-protein coding RNA 461 [Source:HGNCSymbol;Acc:HGNC:42810]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38588,691,055 - 88,691,115EPDNEWNC

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:42810 AgrOrtholog
COSMIC MIR9-2HG COSMIC
Ensembl Genes ENSG00000245526 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000500197 ENTREZGENE
  ENST00000505030 ENTREZGENE
  ENST00000509265 ENTREZGENE
  ENST00000511014 ENTREZGENE
  ENST00000663276 ENTREZGENE
  ENST00000666195 ENTREZGENE
GTEx ENSG00000245526 GTEx
HGNC ID HGNC:42810 ENTREZGENE
Human Proteome Map MIR9-2HG Human Proteome Map
NCBI Gene 645323 ENTREZGENE
OMIM 616611 OMIM
RNAcentral URS0000CCDF78 RNACentral
  URS0000CCDFAF RNACentral
  URS0000CCDFB9 RNACentral
  URS0000CCDFD2 RNACentral
  URS0000CCE075 RNACentral
  URS0000CCE07F RNACentral
  URS0000CCE08C RNACentral
  URS0000CCE0D0 RNACentral
  URS0000CCE0D8 RNACentral
  URS0000CCE0DF RNACentral
  URS0000CCE109 RNACentral
  URS0000CCE13F RNACentral
  URS0000CCE14A RNACentral
  URS0000CCE15A RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-07-24 MIR9-2HG  MIR9-2 host gene  LINC00461  long intergenic non-protein coding RNA 461  Symbol and/or name change 19259463 PROVISIONAL