Mir9-2hg (Mir9-2 host gene) - Rat Genome Database

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Gene: Mir9-2hg (Mir9-2 host gene) Rattus norvegicus
Analyze
Symbol: Mir9-2hg (Ensembl: LOC120100659)
Name: Mir9-2 host gene (Ensembl:uncharacterized LOC120100659)
RGD ID: 40960165
Description: INTERACTS WITH acrylamide (ortholog); aflatoxin B1 (ortholog); arsenite(3-) (ortholog)
Type: protein-coding (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: LOC120100659; uncharacterized LOC120100659; uncharacterized protein LOC120100659; uncharacterized protein Mir9-2hg
RGD Orthologs
Human
Mouse
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8215,909,918 - 16,100,226 (+)NCBIGRCr8
mRatBN7.2214,174,288 - 14,363,747 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl214,179,651 - 14,200,268 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map2q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Mir9-2hg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8215,909,918 - 16,100,226 (+)NCBIGRCr8
mRatBN7.2214,174,288 - 14,363,747 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl214,179,651 - 14,200,268 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map2q11NCBI
MIR9-2HG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38588,538,266 - 88,691,041 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl588,507,546 - 88,691,057 (-)EnsemblGRCh38hg38GRCh38
GRCh37587,834,084 - 87,986,858 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36587,871,743 - 88,010,012 (-)NCBINCBI36Build 36hg18NCBI36
Celera583,729,558 - 83,873,577 (-)NCBICelera
Cytogenetic Map5q14.3NCBI
HuRef583,040,988 - 83,185,511 (-)NCBIHuRef
CHM1_1587,269,636 - 87,413,656 (-)NCBICHM1_1
T2T-CHM13v2.0589,019,338 - 89,172,172 (-)NCBIT2T-CHM13v2.0
Mir9-2hg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391383,869,500 - 83,889,427 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1383,863,381 - 84,100,589 (+)EnsemblGRCm39 Ensembl
GRCm381383,721,381 - 83,741,308 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1383,721,381 - 83,884,194 (+)EnsemblGRCm38mm10GRCm38
MGSCv371383,867,711 - 83,875,274 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361384,212,082 - 84,215,335 (+)NCBIMGSCv36mm8
Celera1385,985,072 - 85,990,318 (+)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1343.68NCBI

Variants

.
Variants in Mir9-2hg
1054 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
61368Mcs1Mammary carcinoma susceptibility QTL 14.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777223319447Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000098608
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl214,186,034 - 14,200,268 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102989
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl214,179,747 - 14,182,225 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103669
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl214,179,651 - 14,200,268 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117236
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl214,188,542 - 14,200,268 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119910
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl214,179,651 - 14,184,210 (+)Ensembl
RefSeq Acc Id: XM_039103405   ⟹   XP_038959333
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8215,922,006 - 15,935,774 (+)NCBI
mRatBN7.2214,186,435 - 14,200,206 (+)NCBI
RefSeq Acc Id: XM_039103406   ⟹   XP_038959334
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8215,922,006 - 16,100,226 (+)NCBI
mRatBN7.2214,186,435 - 14,363,747 (+)NCBI
RefSeq Acc Id: XR_005500469
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8215,911,244 - 15,935,774 (+)NCBI
mRatBN7.2214,175,677 - 14,200,206 (+)NCBI
RefSeq Acc Id: XR_005500470
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8215,909,918 - 15,935,774 (+)NCBI
mRatBN7.2214,174,288 - 14,200,206 (+)NCBI
RefSeq Acc Id: XR_010063692
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8215,911,172 - 15,935,774 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038959333 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959334 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_038959334   ⟸   XM_039103406
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038959333   ⟸   XM_039103405
- Peptide Label: isoform X1

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-54975 BioCyc
Ensembl Genes ENSRNOG00000062864 Ensembl, ENTREZGENE
NCBI Gene LOC120100659 ENTREZGENE
PhenoGen Mir9-2hg PhenoGen
RatGTEx ENSRNOG00000062864 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-08-22 Mir9-2hg  Mir9-2 host gene  LOC120100659  uncharacterized LOC120100659  Name and Symbol changed 629549 APPROVED
2021-01-26 LOC120100659  uncharacterized LOC120100659      Symbol and Name status set to provisional 70820 PROVISIONAL