STMP1 (short transmembrane mitochondrial protein 1) - Rat Genome Database

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Gene: STMP1 (short transmembrane mitochondrial protein 1) Homo sapiens
Analyze
Symbol: STMP1
Name: short transmembrane mitochondrial protein 1
RGD ID: 5480038
HGNC Page HGNC:41909
Description: Involved in mitochondrial cytochrome c oxidase assembly and mitochondrial respirasome assembly. Is active in mitochondrial inner membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C7orf73; chromosome 7 open reading frame 73; mitolamban; Mm47; Mtlbn; PL-5283; uncharacterized protein C7orf73
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: LOC100287425   LOC100289196  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387135,662,514 - 135,676,416 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7135,662,496 - 135,693,418 (+)EnsemblGRCh38hg38GRCh38
GRCh377135,347,262 - 135,361,164 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367134,997,446 - 135,011,700 (+)NCBINCBI36Build 36hg18NCBI36
Celera7130,084,680 - 130,098,619 (+)NCBICelera
Cytogenetic Map7q33NCBI
HuRef7129,650,090 - 129,663,955 (+)NCBIHuRef
CHM1_17135,281,127 - 135,295,066 (+)NCBICHM1_1
T2T-CHM13v2.07136,969,813 - 136,983,713 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27134,691,647 - 134,705,586 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:16344560   PMID:17720804   PMID:21873635   PMID:23073385   PMID:30705363   PMID:32296183   PMID:35073737   PMID:35101990   PMID:35450818   PMID:35544764  


Genomics

Comparative Map Data
STMP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387135,662,514 - 135,676,416 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7135,662,496 - 135,693,418 (+)EnsemblGRCh38hg38GRCh38
GRCh377135,347,262 - 135,361,164 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367134,997,446 - 135,011,700 (+)NCBINCBI36Build 36hg18NCBI36
Celera7130,084,680 - 130,098,619 (+)NCBICelera
Cytogenetic Map7q33NCBI
HuRef7129,650,090 - 129,663,955 (+)NCBIHuRef
CHM1_17135,281,127 - 135,295,066 (+)NCBICHM1_1
T2T-CHM13v2.07136,969,813 - 136,983,713 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27134,691,647 - 134,705,586 (+)NCBI
Stmp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39635,229,645 - 35,238,574 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl635,229,589 - 35,240,431 (+)EnsemblGRCm39 Ensembl
GRCm38635,252,710 - 35,261,639 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl635,252,654 - 35,263,496 (+)EnsemblGRCm38mm10GRCm38
MGSCv37635,202,699 - 35,212,059 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36635,182,806 - 35,193,648 (+)NCBIMGSCv36mm8
Celera635,253,236 - 35,262,596 (+)NCBICelera
Cytogenetic Map6B1NCBI
cM Map615.26NCBI
Stmp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8464,894,663 - 64,904,495 (+)NCBIGRCr8
mRatBN7.2463,927,523 - 63,937,355 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx468,885,787 - 68,895,631 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0464,801,411 - 64,811,255 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0463,203,916 - 63,213,761 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0462,780,596 - 62,790,428 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl462,780,596 - 62,790,422 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0462,503,531 - 62,513,363 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4462,662,808 - 62,672,768 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera458,975,733 - 58,985,565 (+)NCBICelera
Cytogenetic Map4q22NCBI
Stmp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554947,063,374 - 7,077,052 (-)NCBIChiLan1.0ChiLan1.0
STMP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26172,488,791 - 172,500,802 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1724,499,046 - 24,511,240 (+)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl7140,132,541 - 140,144,976 (+)Ensemblpanpan1.1panPan2
LOC102154691
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1105,562,521 - 5,563,107 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1612,586,975 - 12,602,256 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha105,554,467 - 5,555,057 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0105,596,165 - 5,596,758 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1105,537,576 - 5,538,169 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0105,786,579 - 5,787,171 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0105,926,399 - 5,926,989 (-)NCBIUU_Cfam_GSD_1.0
Stmp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511818,771,746 - 18,783,468 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936592435,243 - 447,999 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STMP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.113138,779,975 - 138,781,436 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213148,406,789 - 148,407,239 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STMP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121104,340,369 - 104,352,965 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660721,235,247 - 1,247,819 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stmp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476515,941,281 - 15,969,027 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in STMP1
3 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 7q32.1-36.3(chr7:129310166-159282390)x3 copy number gain See cases [RCV000050876] Chr7:129310166..159282390 [GRCh38]
Chr7:128950007..159075079 [GRCh37]
Chr7:128737243..158767840 [NCBI36]
Chr7:7q32.1-36.3		 pathogenic
GRCh38/hg38 7q32.3-36.3(chr7:132850196-159325876)x3 copy number gain See cases [RCV000051101] Chr7:132850196..159325876 [GRCh38]
Chr7:132534956..159118566 [GRCh37]
Chr7:132185496..158811327 [NCBI36]
Chr7:7q32.3-36.3		 pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:53985-159282531)x1 copy number loss See cases [RCV000052250] Chr7:53985..159282531 [GRCh38]
Chr7:53985..159075220 [GRCh37]
Chr7:149068..158767981 [NCBI36]
Chr7:7p22.3-q36.3		 pathogenic
GRCh38/hg38 7q32.3-36.1(chr7:132023155-149309794)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000054172]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000054172]|See cases [RCV000054172] Chr7:132023155..149309794 [GRCh38]
Chr7:131707914..149006885 [GRCh37]
Chr7:131358454..148637818 [NCBI36]
Chr7:7q32.3-36.1		 pathogenic
GRCh38/hg38 7q33-35(chr7:135414108-144140219)x1 copy number loss See cases [RCV000054173] Chr7:135414108..144140219 [GRCh38]
Chr7:135098857..143837312 [GRCh37]
Chr7:134749397..143468245 [NCBI36]
Chr7:7q33-35		 pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:54185-159282390)x1 copy number loss See cases [RCV000135401] Chr7:54185..159282390 [GRCh38]
Chr7:54185..159075079 [GRCh37]
Chr7:149268..158767840 [NCBI36]
Chr7:7p22.3-q36.3		 pathogenic
GRCh38/hg38 7q21.3-36.3(chr7:97419852-158923762)x3 copy number gain See cases [RCV000136717] Chr7:97419852..158923762 [GRCh38]
Chr7:97049164..158716453 [GRCh37]
Chr7:96887100..158409214 [NCBI36]
Chr7:7q21.3-36.3		 pathogenic
GRCh38/hg38 7q33-36.3(chr7:134666829-158591882)x1 copy number loss See cases [RCV000138120] Chr7:134666829..158591882 [GRCh38]
Chr7:134351581..158384574 [GRCh37]
Chr7:134002121..158077335 [NCBI36]
Chr7:7q33-36.3		 pathogenic
GRCh38/hg38 7q31.32-36.3(chr7:121863759-159335865)x3 copy number gain See cases [RCV000138847] Chr7:121863759..159335865 [GRCh38]
Chr7:121503813..159128555 [GRCh37]
Chr7:121291049..158821316 [NCBI36]
Chr7:7q31.32-36.3		 pathogenic
GRCh38/hg38 7q33-36.1(chr7:135017687-148807400)x1 copy number loss See cases [RCV000138903] Chr7:135017687..148807400 [GRCh38]
Chr7:134702438..148504492 [GRCh37]
Chr7:134352978..148135425 [NCBI36]
Chr7:7q33-36.1		 pathogenic
GRCh38/hg38 7q32.3-36.3(chr7:132444095-159335866)x3 copy number gain See cases [RCV000139654] Chr7:132444095..159335866 [GRCh38]
Chr7:132128854..159128556 [GRCh37]
Chr7:131779394..158821317 [NCBI36]
Chr7:7q32.3-36.3		 pathogenic
GRCh38/hg38 7q31.2-36.3(chr7:115459015-159325817)x3 copy number gain See cases [RCV000141413] Chr7:115459015..159325817 [GRCh38]
Chr7:115099069..159118507 [GRCh37]
Chr7:114886305..158811268 [NCBI36]
Chr7:7q31.2-36.3		 pathogenic
GRCh38/hg38 7q32.3-36.3(chr7:131228764-159335866)x3 copy number gain See cases [RCV000142802] Chr7:131228764..159335866 [GRCh38]
Chr7:130913523..159128556 [GRCh37]
Chr7:130564063..158821317 [NCBI36]
Chr7:7q32.3-36.3		 pathogenic
GRCh38/hg38 7q32.3-36.3(chr7:131171478-159327017)x3 copy number gain See cases [RCV000143754] Chr7:131171478..159327017 [GRCh38]
Chr7:130856237..159119707 [GRCh37]
Chr7:130506777..158812468 [NCBI36]
Chr7:7q32.3-36.3		 pathogenic
GRCh38/hg38 7q32.3-36.3(chr7:132438072-159327017)x3 copy number gain See cases [RCV000143707] Chr7:132438072..159327017 [GRCh38]
Chr7:132122831..159119707 [GRCh37]
Chr7:131773371..158812468 [NCBI36]
Chr7:7q32.3-36.3		 pathogenic
GRCh37/hg19 7q32.1-36.3(chr7:128312450-159119220) copy number gain not provided [RCV000767558] Chr7:128312450..159119220 [GRCh37]
Chr7:7q32.1-36.3		 pathogenic
TMEM106B-BRAF fusion deletion Pleomorphic xanthoastrocytoma [RCV000454357] Chr7:12258147..140494267 [GRCh37]
Chr7:7p21.3-q34		 pathogenic
GRCh37/hg19 7q22.1-36.3(chr7:98969247-159119707)x3 copy number gain See cases [RCV000447709] Chr7:98969247..159119707 [GRCh37]
Chr7:7q22.1-36.3		 pathogenic
GRCh37/hg19 7q32.3-34(chr7:131642114-139107211)x1 copy number loss See cases [RCV000448552] Chr7:131642114..139107211 [GRCh37]
Chr7:7q32.3-34		 pathogenic
GRCh37/hg19 7q33-36.3(chr7:133799185-159119707)x1 copy number loss See cases [RCV000448836] Chr7:133799185..159119707 [GRCh37]
Chr7:7q33-36.3		 pathogenic
GRCh37/hg19 7q32.1-34(chr7:127295698-139524358)x1 copy number loss See cases [RCV000447722] Chr7:127295698..139524358 [GRCh37]
Chr7:7q32.1-34		 pathogenic
GRCh37/hg19 7q32.1-36.3(chr7:128276078-159119707)x3 copy number gain See cases [RCV000447956] Chr7:128276078..159119707 [GRCh37]
Chr7:7q32.1-36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707) copy number gain See cases [RCV000510686] Chr7:43361..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7q33(chr7:134379624-135927947)x3 copy number gain See cases [RCV000511199] Chr7:134379624..135927947 [GRCh37]
Chr7:7q33		 uncertain significance
GRCh37/hg19 7q22.1-36.3(chr7:98693388-159119707)x3 copy number gain not provided [RCV000682911] Chr7:98693388..159119707 [GRCh37]
Chr7:7q22.1-36.3		 pathogenic
GRCh37/hg19 7q33(chr7:133230189-137972605)x1 copy number loss not provided [RCV000682906] Chr7:133230189..137972605 [GRCh37]
Chr7:7q33		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:10704-159122532)x3 copy number gain not provided [RCV000746278] Chr7:10704..159122532 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:44935-159126310)x3 copy number gain not provided [RCV000746280] Chr7:44935..159126310 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
Single allele complex Renal transitional cell carcinoma [RCV000754611] Chr7:129367205..140482957 [GRCh37]
Chr7:7q32.2-34		 likely pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:10365-159119707)x3 copy number gain not provided [RCV000848126] Chr7:10365..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43360-159119707)x1 copy number loss See cases [RCV000446044] Chr7:43360..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707)x3 copy number gain See cases [RCV000511549] Chr7:43361..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7q32.3-36.3(chr7:131414604-159126310)x1 copy number loss See cases [RCV001007432] Chr7:131414604..159126310 [GRCh37]
Chr7:7q32.3-36.3		 pathogenic
GRCh37/hg19 7q32.3-36.3(chr7:130592554-159119707)x3 copy number gain not provided [RCV000849569] Chr7:130592554..159119707 [GRCh37]
Chr7:7q32.3-36.3		 pathogenic
GRCh37/hg19 7q32.3-36.1(chr7:131779213-149042734)x1 copy number loss not provided [RCV002472560] Chr7:131779213..149042734 [GRCh37]
Chr7:7q32.3-36.1		 pathogenic
GRCh37/hg19 7q31.1-36.3(chr7:109251060-159119707)x3 copy number gain not provided [RCV001005994] Chr7:109251060..159119707 [GRCh37]
Chr7:7q31.1-36.3		 pathogenic
GRCh37/hg19 7q33-35(chr7:133848099-145814115)x1 copy number loss Hypertelorism [RCV001801200] Chr7:133848099..145814115 [GRCh37]
Chr7:7q33-35		 pathogenic
GRCh37/hg19 7q33-36.3(chr7:133851002-159119707)x3 copy number gain not provided [RCV001834520] Chr7:133851002..159119707 [GRCh37]
Chr7:7q33-36.3		 pathogenic
GRCh37/hg19 7q32.1-34(chr7:127295698-139524358) copy number loss not specified [RCV002053727] Chr7:127295698..139524358 [GRCh37]
Chr7:7q32.1-34		 pathogenic
Single allele complex Ring chromosome 7 [RCV002280646] Chr7:43360..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
NC_000007.13:g.(?_130781014)_(150301047_?)del deletion not provided [RCV003116360] Chr7:130781014..150301047 [GRCh37]
Chr7:7q32.3-36.1		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:56604613-96692931)x1 copy number loss See cases [RCV002287832] Chr7:56604613..96692931 [GRCh37]
Chr7:7p22.3-q36.3		 uncertain significance
GRCh37/hg19 7q31.31-33(chr7:120582003-137699953)x1 copy number loss not specified [RCV003986721] Chr7:120582003..137699953 [GRCh37]
Chr7:7q31.31-33		 pathogenic
NM_001130929.2(STMP1):c.106A>G (p.Lys36Glu) single nucleotide variant not specified [RCV004465855] Chr7:135674127 [GRCh38]
Chr7:135358875 [GRCh37]
Chr7:7q33		 uncertain significance
GRCh37/hg19 7q33(chr7:134648448-137942208)x1 copy number loss not provided [RCV000849809] Chr7:134648448..137942208 [GRCh37]
Chr7:7q33		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:741
Count of miRNA genes:563
Interacting mature miRNAs:620
Transcripts:ENST00000422968, ENST00000507606, ENST00000509448, ENST00000515197
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH68700  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377135,359,075 - 135,359,226UniSTSGRCh37
Build 367135,009,615 - 135,009,766RGDNCBI36
Celera7130,096,534 - 130,096,685RGD
Cytogenetic Map7q33UniSTS
HuRef7129,661,870 - 129,662,021UniSTS
CRA_TCAGchr7v27134,703,501 - 134,703,652UniSTS
GeneMap99-GB4 RH Map7610.26UniSTS
RH26240  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372203,104,347 - 203,104,480UniSTSGRCh37
Build 362202,812,592 - 202,812,725RGDNCBI36
Celera2196,856,140 - 196,856,273RGD
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map7q33UniSTS
HuRef2194,952,435 - 194,952,568UniSTS
GDB:451559  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372203,104,318 - 203,104,425UniSTSGRCh37
GRCh377135,357,512 - 135,358,903UniSTSGRCh37
Build 362202,812,563 - 202,812,670RGDNCBI36
Celera2196,856,111 - 196,856,218RGD
Celera7130,094,971 - 130,096,362UniSTS
Cytogenetic Map7q33UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map2q33.1UniSTS
HuRef2194,952,406 - 194,952,513UniSTS
HuRef7129,660,307 - 129,661,698UniSTS
CRA_TCAGchr7v27134,701,938 - 134,703,329UniSTS
SHGC-146230  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377135,355,565 - 135,355,909UniSTSGRCh37
Build 367135,006,105 - 135,006,449RGDNCBI36
Celera7130,093,024 - 130,093,368RGD
Cytogenetic Map7q33UniSTS
HuRef7129,658,360 - 129,658,704UniSTS
CRA_TCAGchr7v27134,699,991 - 134,700,335UniSTS
TNG Radiation Hybrid Map74491.0UniSTS
STS-H98777  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377135,360,232 - 135,360,415UniSTSGRCh37
Build 367135,010,772 - 135,010,955RGDNCBI36
Celera7130,097,691 - 130,097,874RGD
Cytogenetic Map7q33UniSTS
HuRef7129,663,027 - 129,663,210UniSTS
CRA_TCAGchr7v27134,704,658 - 134,704,841UniSTS
GeneMap99-GB4 RH Map7610.36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2183 2594 1592 496 1861 343 4312 1843 2847 371 1454 1592 168 1 1146 2764 5 2
Low 256 397 134 128 90 122 45 354 887 48 6 21 7 58 24 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000422968
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7135,662,564 - 135,693,418 (+)Ensembl
RefSeq Acc Id: ENST00000507606   ⟹   ENSP00000425996
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7135,662,514 - 135,676,416 (+)Ensembl
RefSeq Acc Id: ENST00000509448   ⟹   ENSP00000485469
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7135,662,496 - 135,691,873 (+)Ensembl
RefSeq Acc Id: ENST00000515197
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7135,662,514 - 135,673,288 (+)Ensembl
RefSeq Acc Id: NM_001130929   ⟹   NP_001124401
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387135,662,514 - 135,676,416 (+)NCBI
GRCh377135,347,221 - 135,361,160 (+)ENTREZGENE
HuRef7129,650,090 - 129,663,955 (+)ENTREZGENE
CHM1_17135,281,127 - 135,295,066 (+)NCBI
T2T-CHM13v2.07136,969,813 - 136,983,713 (+)NCBI
CRA_TCAGchr7v27134,691,647 - 134,705,586 (+)ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001124401 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein E0CX11 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000425996
  ENSP00000425996.1
  ENSP00000485469.1
Reference Protein Sequences
RefSeq Acc Id: NP_001124401   ⟸   NM_001130929
- Peptide Label: precursor
- UniProtKB: E0CX11 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000425996   ⟸   ENST00000507606
RefSeq Acc Id: ENSP00000485469   ⟸   ENST00000509448

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E0CX11-F1-model_v2 AlphaFold E0CX11 1-47 view protein structure

Promoters
RGD ID:6806377
Promoter ID:HG_KWN:59829
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001130929,   UC003VSZ.2
Position:
Human AssemblyChrPosition (strand)Source
Build 367134,997,031 - 134,997,867 (+)MPROMDB
RGD ID:7211995
Promoter ID:EPDNEW_H11744
Type:initiation region
Name:C7orf73_1
Description:chromosome 7 open reading frame 73
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh387135,662,514 - 135,662,574EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:41909 AgrOrtholog
COSMIC STMP1 COSMIC
Ensembl Genes ENSG00000243317 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000507606 ENTREZGENE
  ENST00000507606.3 UniProtKB/Swiss-Prot
  ENST00000509448.5 UniProtKB/TrEMBL
GTEx ENSG00000243317 GTEx
HGNC ID HGNC:41909 ENTREZGENE
Human Proteome Map STMP1 Human Proteome Map
InterPro STMP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:647087 UniProtKB/Swiss-Prot
NCBI Gene 647087 ENTREZGENE
OMIM 618755 OMIM
PANTHER PTHR47709 UniProtKB/Swiss-Prot
  SHORT TRANSMEMBRANE MITOCHONDRIAL PROTEIN 1 UniProtKB/Swiss-Prot
  SHORT TRANSMEMBRANE MITOCHONDRIAL PROTEIN 1 UniProtKB/TrEMBL
  SHORT TRANSMEMBRANE MITOCHONDRIAL PROTEIN 1 UniProtKB/TrEMBL
Pfam DUF4535 UniProtKB/Swiss-Prot
PharmGKB PA166049075 PharmGKB
UniProt A0A096LP97_HUMAN UniProtKB/TrEMBL
  E0CX11 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-08-01 STMP1  short transmembrane mitochondrial protein 1  C7orf73  chromosome 7 open reading frame 73  Symbol and/or name change 5135510 APPROVED