STMP1 (short transmembrane mitochondrial protein 1)

Gene: STMP1 (short transmembrane mitochondrial protein 1) Sus scrofa

Analyze

Symbol:

STMP1

Name:

short transmembrane mitochondrial protein 1

RGD ID:

14223162

Description:

INVOLVED IN mitochondrial cytochrome c oxidase assembly (ortholog); mitochondrial respirasome assembly (ortholog); mitochondrial respiratory chain complex III assembly (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial intermembrane space (ortholog); mitochondrial outer membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

C13H7orf73; chromosome 13 C7orf73 homolog; uncharacterized protein C7orf73 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	13	138,779,975 - 138,781,436 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	148,406,789 - 148,407,239 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

pleomorphic xanthoastrocytoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mitochondrial cytochrome c oxidase assembly (ISO)

mitochondrial respirasome assembly (ISO)

mitochondrial respiratory chain complex III assembly (ISO)

positive regulation of interleukin-1 beta production (ISO)

positive regulation of NLRP3 inflammasome complex assembly (ISO)

Cellular Component

mitochondrial inner membrane (ISO)

mitochondrial intermembrane space (ISO)

mitochondrial outer membrane (ISO)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

STMP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	13	138,779,975 - 138,781,436 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	148,406,789 - 148,407,239 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

STMP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	135,662,514 - 135,676,416 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	135,662,496 - 135,693,418 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	135,347,262 - 135,361,164 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	134,997,446 - 135,011,700 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	7	130,084,680 - 130,098,619 (+)	NCBI		Celera
Cytogenetic Map	7	q33	NCBI
HuRef	7	129,650,090 - 129,663,955 (+)	NCBI		HuRef
CHM1_1	7	135,281,127 - 135,295,066 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	136,969,813 - 136,983,713 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	134,691,647 - 134,705,586 (+)	NCBI

Stmp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	35,229,645 - 35,238,574 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	35,229,589 - 35,240,431 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	35,252,710 - 35,261,639 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	35,252,654 - 35,263,496 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	35,202,699 - 35,212,059 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	35,182,806 - 35,193,648 (+)	NCBI		MGSCv36	mm8
Celera	6	35,253,236 - 35,262,596 (+)	NCBI		Celera
Cytogenetic Map	6	B1	NCBI
cM Map	6	15.26	NCBI

Stmp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	64,894,663 - 64,904,495 (+)	NCBI		GRCr8
mRatBN7.2	4	63,927,523 - 63,937,355 (+)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	4	68,885,787 - 68,895,631 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	64,801,411 - 64,811,255 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	63,203,916 - 63,213,761 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	62,780,596 - 62,790,428 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	62,780,596 - 62,790,422 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	62,503,531 - 62,513,363 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	62,662,808 - 62,672,768 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	58,975,733 - 58,985,565 (+)	NCBI		Celera
Cytogenetic Map	4	q22	NCBI

Stmp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955494	7,063,374 - 7,077,052 (-)	NCBI	ChiLan1.0	ChiLan1.0

LOC100986346
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	104,863,438 - 104,864,559 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	104,878,745 - 104,879,557 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	89,494,674 - 89,495,275 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	207,646,530 - 207,646,718 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	140,132,541 - 140,144,976 (+)	Ensembl	panpan1.1		panPan2

STMP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	12,586,946 - 12,602,220 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	13,598,692 - 13,613,967 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	12,565,711 - 12,581,072 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	16	13,008,193 - 13,023,384 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	12,108,083 - 12,123,432 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	12,246,881 - 12,262,160 (-)	NCBI		UU_Cfam_GSD_1.0

Stmp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	18,771,746 - 18,783,468 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936592	435,243 - 447,999 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STMP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	104,340,369 - 104,352,965 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666072	1,235,247 - 1,247,819 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Stmp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624765	15,941,281 - 15,969,027 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in STMP1
33 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021070275	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_021070275 ⟹ XP_020925934

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	13	138,779,975 - 138,781,436 (-)	NCBI

Sequence:

show sequence

AGGAAAAAAGTATTTAAGCAAAGAATTAGCACTTTTAATTCTTTGACCTCCCTCTCTCATTTGC
CCTAAAAAACCTACCAATACCCTTCTATTTTCCACTGAACACTAAAGGGGATTACATGTACCAT
GGTTTTTTTTTTTTTTTTTTTTTTGAAAAATTAATTATCAAAAGTACTCGTCAAAGGAAAACAA
AAATAACAGCAGCAGTCTTTGAATTTCTCTGAATCCTCACACAGAAATAAATAGTACAACTAGA
TAATAAAACCAAAACCTCACACACAATATTTACAATAAAATTAGGAAGGTAGTCCTACAAACCT
CAAAATACAAGTAAGTAAGGACAAACCACCCAAAAGGCATAGGACCTGCATGGTATTAGAGTCT
GTGCAGTAGGAAGAAGGCAGCAACAGTGTAACATCCGATGGCCCTGAGAACAGGAAAACCCCAA
AATAGCCAATAAGTTCTCAGTGGAAAGTATATTTGGCCAATCTTAGAACAGCAGCTTAAAATGG
CAGGGCTTCCCTGTTCTCCAGTACTGGTTGAGTACGAGAGGTCCACAGTAAAAACAGAGGCTAG
AATAATCTAGGCCCTCTGAACTCTCAAAACTAACACAATACTGGGCTGCCTTCCAAGACACGGA
CTGCACTAAGAAACTTCTAGTGTGAAATAGAAATTAGGCAGAACAGGGATAACAGCAATAGAGG
AAAAACAAGGGCTACACACATGTATAATTTATTATCAGCTAGCCACATGTGGCTATCAAGGGCT
TGAAATATGCCTAATATAAATAAGAAATGTAATCATTAATATTATTTAATTTTAATTAAGTACA
AATTATTTTTCCATTAAATGAAACTACATTTTAGCCTGACTATATTTTATTTTAACTGTGGCAT
CATGTAAGATACTGCTGAATTGTTGTGCAAGTAACAAGTGTGCTTGTTGTTCCTCATGTTAAAA
TAAACCAACCAGCTATCTAGCCAGTATTAATAGATTGGTTCAATTTAAATGATTTTTTCCTACA
CACTTATGTAAGACTTAATGTATTTATTTATTTGCATACTTTAAGCAGAGAGCATGAGGAACAG
TTGATATCTATGTAAATCATAATTGGTAATTAAATTAAAAGATAAATACTTATTATTTTAATTG
AATAATTTATCTGTTTCAAAAAATAAATACAGACACATTTTTAAGTTTCAAATAAAGGTGTCAA
GTCTGCCCGTCACACCGCGGGAGGCAGCCTGGGACGGCCCACGGAGCCGCAGCCACCCATCCAC
CCATCGCTCCCTCCCGGCGGACATCATGCTCCAGTTCCTGCTTGGATTTAATCTCGGCAACGTG
GTTGGAATGTATCTGGCTCAGAACTATGCCATACCAAACCTGGCTAAAAAACTTGAAGATATTA
AAAAGGACCTGGATGCCAAGAAGAAACCCCCTAGTTCATGAGGGTGACTCCAGC

hide sequence

Protein Sequences


Protein RefSeqs	XP_020925934	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_020925934 ⟸ XM_021070275
- Sequence:	show sequence MLQFLLGFNLGNVVGMYLAQNYAIPNLAKKLEDIKKDLDAKKKPPSS hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	STMP1	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar