LOC120093278 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120093278 (U6 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120093278
Name: U6 spliceosomal RNA
RGD ID: 41103385
Description: INTERACTS WITH benzo[a]pyrene (ortholog)
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8675,803,712 - 75,803,818 (+)NCBIGRCr8
mRatBN7.2670,068,373 - 70,068,479 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl670,068,373 - 70,068,479 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map6q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
LOC120093278
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8675,803,712 - 75,803,818 (+)NCBIGRCr8
mRatBN7.2670,068,373 - 70,068,479 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl670,068,373 - 70,068,479 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map6q23NCBI
RNU6-8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381432,203,163 - 32,203,269 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1432,203,163 - 32,203,269 (-)EnsemblGRCh38hg38GRCh38
GRCh371432,672,369 - 32,672,475 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map14q12NCBI
HuRef1412,790,267 - 12,790,373 (-)NCBIHuRef
CHM1_11432,672,198 - 32,672,304 (-)NCBICHM1_1
T2T-CHM13v2.01426,400,790 - 26,400,896 (-)NCBIT2T-CHM13v2.0
Gm23296
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391252,651,268 - 52,651,374 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1252,651,268 - 52,651,374 (-)EnsemblGRCm39 Ensembl
GRCm381252,604,485 - 52,604,591 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1252,604,485 - 52,604,591 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map12C1NCBI
LOC119866959
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha3031,887,985 - 31,888,091 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03032,149,007 - 32,149,113 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3032,149,007 - 32,149,113 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13032,077,351 - 32,077,457 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03032,139,013 - 32,139,119 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03032,384,597 - 32,384,703 (-)NCBIUU_Cfam_GSD_1.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)65672856290198260Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)657730540104085867Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)661747639106747639Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)66304056271636266Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005486387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000098146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl670,068,373 - 70,068,479 (+)Ensembl
RefSeq Acc Id: XR_005486387
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8675,803,712 - 75,803,818 (+)NCBI
mRatBN7.2670,068,373 - 70,068,479 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-37572 BioCyc
Ensembl Genes ENSRNOG00000066230 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000098146 ENTREZGENE
NCBI Gene LOC120093278 ENTREZGENE
PhenoGen LOC120093278 PhenoGen
RatGTEx ENSRNOG00000066230 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120093278  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL