LOC119870548 (U6 spliceosomal RNA)

Gene: LOC119870548 (U6 spliceosomal RNA) Canis lupus familiaris

Analyze

Symbol:

LOC119870548 (Ensembl: U6)

Name:

U6 spliceosomal RNA

RGD ID:

40911117

Description:

Type:

pseudo (Ensembl: snRNA)

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Dog10K_Boxer_Tasha	2	11,783,300 - 11,783,394 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	11,343,030 - 11,343,124 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	11,343,030 - 11,343,124 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	10,651,989 - 10,652,083 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	10,738,039 - 10,738,133 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	10,936,051 - 10,936,145 (+)	NCBI		UU_Cfam_GSD_1.0

Annotation Click to see Annotation Detail View

References

Genomics

Comparative Map Data

LOC119870548
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Dog10K_Boxer_Tasha	2	11,783,300 - 11,783,394 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	11,343,030 - 11,343,124 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	11,343,030 - 11,343,124 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	10,651,989 - 10,652,083 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	10,738,039 - 10,738,133 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	10,936,051 - 10,936,145 (+)	NCBI		UU_Cfam_GSD_1.0

RNU6-1212P
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	19,792,998 - 19,793,101 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	19,792,998 - 19,793,101 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	20,081,927 - 20,082,030 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Cytogenetic Map	10	p12.31	NCBI
CHM1_1	10	20,081,867 - 20,081,970 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	19,811,258 - 19,811,361 (-)	NCBI		T2T-CHM13v2.0

Gm23231
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	38,095,318 - 38,095,421 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	38,095,318 - 38,095,421 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	38,118,383 - 38,118,486 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	38,118,383 - 38,118,486 (+)	Ensembl	GRCm38		mm10	GRCm38
Cytogenetic Map	6	B1	NCBI

LOC120094417
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	76,476,895 - 76,477,003 (-)	NCBI		GRCr8
mRatBN7.2	8	67,595,718 - 67,595,826 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	67,595,718 - 67,595,826 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0 Ensembl	8	72,774,486 - 72,774,594 (-)	NCBI	Rnor6.0		rn6	Rnor6.0
Cytogenetic Map	8	q24	NCBI

Expression

Sequence

Nucleotide Sequences


GenBank Nucleotide	AAEX04000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000373	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00845016374

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	2	11,343,030 - 11,343,124 (+)	Ensembl

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00845009296	Ensembl, ENTREZGENE
NCBI Gene	LOC119870548	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message