Gm23231 (predicted gene, 23231) - Rat Genome Database

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Gene: Gm23231 (predicted gene, 23231) Mus musculus
Analyze
Symbol: Gm23231
Name: predicted gene, 23231
RGD ID: 15002779
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39638,095,318 - 38,095,421 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl638,095,318 - 38,095,421 (+)EnsemblGRCm39 Ensembl
GRCm38638,118,383 - 38,118,486 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl638,118,383 - 38,118,486 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map6B1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm23231
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39638,095,318 - 38,095,421 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl638,095,318 - 38,095,421 (+)EnsemblGRCm39 Ensembl
GRCm38638,118,383 - 38,118,486 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl638,118,383 - 38,118,486 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map6B1NCBI
RNU6-1212P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381019,792,998 - 19,793,101 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1019,792,998 - 19,793,101 (-)EnsemblGRCh38hg38GRCh38
GRCh371020,081,927 - 20,082,030 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map10p12.31NCBI
CHM1_11020,081,867 - 20,081,970 (-)NCBICHM1_1
T2T-CHM13v2.01019,811,258 - 19,811,361 (-)NCBIT2T-CHM13v2.0
LOC120094417
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8876,476,895 - 76,477,003 (-)NCBIGRCr8
mRatBN7.2867,595,718 - 67,595,826 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl867,595,718 - 67,595,826 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl872,774,486 - 72,774,594 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map8q24NCBI
LOC119870548
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha211,783,300 - 11,783,394 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0211,343,030 - 11,343,124 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl211,343,030 - 11,343,124 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1210,651,989 - 10,652,083 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0210,738,039 - 10,738,133 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0210,936,051 - 10,936,145 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm23231
4 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:97
Count of miRNA genes:95
Interacting mature miRNAs:96
Transcripts:ENSMUST00000157299
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
10043869Cia6a_mcollagen induced arthritis QTL 6a (mouse)Not determined61211797146118069Mouse
12904943Tammq4_mtibialis anterior muscle mass QTL 4 (mouse)61961634653616346Mouse
4141094Hrtr1_mheart rate 1 (mouse)Not determined3674146370741463Mouse
1302051Sluc7_msusceptibility to lung cancer 7 (mouse)Not determined6929707443297168Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080576983Mouse
4141749Obrq2_mobesity resistance QTL 2 (mouse)Not determined1275122146751333Mouse
4141454Obrq4_mobesity resistance QTL 4 (mouse)Not determined3170349965703611Mouse
12880425V25Dq5_mvitamin D inactive form serum level QTL 5 (mouse)63267698066676980Mouse
14746995Manh60_mmandible shape 60 (mouse)63720266271202662Mouse
4140989Spqq2_msperm quality QTL 2 (mouse)Not determined1771159851711719Mouse
12904940Edlmmq5_mextensor digitorum longus muscle mass QTL 5 (mouse)61961634653616346Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268571299759Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348703611Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62499999979976983Mouse
11353840Bmiq2_mbody mass index QTL 2 (mouse)6450382345291115Mouse
1301724Pcd4ts1_mp-glycoprotein positive CD4 T cell subset 1 (mouse)Not determined61771159851711719Mouse
10412107Desp4_mdespair 4 (mouse)Not determined62004983054049830Mouse
1300767Aliq4_macute lung injury QTL 4 (mouse)Not determined63627333270273435Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
27226726Tibmd7_mtibia midshaft diameter 7, 16 week (mouse)61769999953476985Mouse
1301998Bts2_mbladder tumor susceptibility 2 (mouse)Not determined61275122146751333Mouse
12904952Gmmq4_mgastrocnemius muscle mass QTL 4 (mouse)61961634653616346Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348703611Mouse
1300959Lxw2_mlupus BXSB x NZW 2 (mouse)Not determined63387226167872400Mouse
11252142Mom12_mModifier of Min 12 (mouse)63387226167872400Mouse
10043868Cia6b_mcollagen induced arthritis QTL 6b (mouse)Not determined63471159838946537Mouse
1300731Smdq3_msegregation of mitochondrial DNA QTL 3 (mouse)Not determined6424920638249325Mouse
1301850Fglu_mfasting glucose (mouse)Not determined61771159851711719Mouse
1357539Bsbob3_mBSB obesity 3 (mouse)Not determined63644845670448576Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414773364675Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348703611Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
14700690Ccs6_mcolon cancer susceptibility 6 (mouse)62377693457776934Mouse
4141988Obrq3_mobesity resistance QTL 3 (mouse)Not determined2829099362291115Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3282758578215957Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004933873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC157667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000157299
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl638,095,318 - 38,095,421 (+)Ensembl
GRCm38.p6 Ensembl638,118,383 - 38,118,486 (+)Ensembl
RefSeq Acc Id: XR_004933873
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39638,095,318 - 38,095,421 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000087924 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000157299 ENTREZGENE
MGD MGI:5453008 ENTREZGENE
NCBI Gene Gm23231 ENTREZGENE
PhenoGen Gm23231 PhenoGen