Gm13648 (predicted gene 13648) - Rat Genome Database

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Gene: Gm13648 (predicted gene 13648) Mus musculus
Analyze
Symbol: Gm13648
Name: predicted gene 13648
RGD ID: 3962433
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394156,137,172 - 156,144,259 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4156,137,172 - 156,144,259 (-)EnsemblGRCm39 Ensembl
GRCm384156,052,715 - 156,059,802 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4156,052,715 - 156,059,802 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map4E2NCBI
cM Map487.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:24200680   PMID:26292219   PMID:27899360  


Genomics

Variants

.
Variants in Gm13648
111 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:124
Count of miRNA genes:121
Interacting mature miRNAs:123
Transcripts:ENSMUST00000138361
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4133010494156860686Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133676733156860686Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134654451156860686Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134654451156860686Mouse
1300780Cocrb16_mcocaine related behavior 16 (mouse)Not determined4138943725156860686Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000138361
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4156,137,172 - 156,144,259 (-)Ensembl
GRCm38.p6 Ensembl4156,052,715 - 156,059,802 (-)Ensembl
RefSeq Acc Id: NR_132444
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394156,137,172 - 156,144,259 (-)NCBI
GRCm384156,052,715 - 156,059,802 (-)NCBI
Sequence:
Promoters
RGD ID:6885866
Promoter ID:EPDNEW_M6384
Type:single initiation site
Name:Gm13648_1
Description:Mus musculus predicted gene 13648 , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384156,059,817 - 156,059,877EPDNEW
RGD ID:15092815
Promoter ID:EPDNEWNC_M717
Type:single initiation site
Name:Gm13648_1
Description:predicted gene 13648 [Source:MGI Symbol;Acc:MGI:3652033]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384156,059,817 - 156,059,877EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000086549 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000138361 ENTREZGENE
MGD MGI:3652033 ENTREZGENE
NCBI Gene 100415901 ENTREZGENE
PhenoGen Gm13648 PhenoGen
RNAcentral URS00008E3A36 RNACentral