Snora23 (small nucleolar RNA, H/ACA box 23) - Rat Genome Database

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Gene: Snora23 (small nucleolar RNA, H/ACA box 23) Mus musculus
Analyze
Symbol: Snora23
Name: small nucleolar RNA, H/ACA box 23
RGD ID: 3726652
MGI Page MGI
Description: INTERACTS WITH bisphenol A; fluoranthene; SB 203580
Type: snorna
RefSeq Status: VALIDATED
Previously known as: MBI-; MBI-1
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397109,645,571 - 109,645,754 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7109,645,571 - 109,645,754 (+)EnsemblGRCm39 Ensembl
GRCm387110,046,364 - 110,046,547 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7110,046,364 - 110,046,547 (+)EnsemblGRCm38mm10GRCm38
MGSCv377117,189,878 - 117,190,061 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera7110,020,139 - 110,020,322 (+)NCBICelera
Cytogenetic Map7E3NCBI
cM Map757.7NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:11387227  


Genomics

Comparative Map Data
Snora23
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397109,645,571 - 109,645,754 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7109,645,571 - 109,645,754 (+)EnsemblGRCm39 Ensembl
GRCm387110,046,364 - 110,046,547 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7110,046,364 - 110,046,547 (+)EnsemblGRCm38mm10GRCm38
MGSCv377117,189,878 - 117,190,061 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera7110,020,139 - 110,020,322 (+)NCBICelera
Cytogenetic Map7E3NCBI
cM Map757.7NCBI
SNORA23
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38119,428,766 - 9,428,954 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl119,428,773 - 9,428,954 (+)EnsemblGRCh38hg38GRCh38
GRCh37119,450,313 - 9,450,501 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36119,406,889 - 9,407,077 (+)NCBINCBI36Build 36hg18NCBI36
Celera119,572,017 - 9,572,205 (+)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef119,121,992 - 9,122,180 (+)NCBIHuRef
CHM1_1119,449,232 - 9,449,420 (+)NCBICHM1_1
T2T-CHM13v2.0119,513,950 - 9,514,138 (+)NCBIT2T-CHM13v2.0
Snora23
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81173,525,793 - 173,525,975 (+)NCBIGRCr8
mRatBN7.21164,091,024 - 164,091,206 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1164,091,024 - 164,091,206 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1174,684,259 - 174,684,441 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map1q33NCBI
LOC119865042
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2132,299,817 - 32,300,001 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02133,610,769 - 33,610,953 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12132,874,473 - 32,874,657 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02133,040,861 - 33,041,045 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02133,334,614 - 33,334,798 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Snora23
15 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:47
Count of miRNA genes:44
Interacting mature miRNAs:45
Transcripts:ENSMUST00000082517
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
14746989Manh62_mmandible shape 62 (mouse)775742528109742528Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
10412110Cctq1_mcentral corneal thickness QTL 1 (mouse)Not determined780551681114551791Mouse
4142500Morq1_mmodifier of Rs1 QTL 1 (mouse)Not determined80551681114551791Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
1301997Cia7_mcollagen induced arthritis QTL 7 (mouse)Not determined785365595112533819Mouse
1301647Elpt_melevated leptin (mouse)Not determined786500186120500329Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787043932121044066Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787043932121044066Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787043932121044066Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787143137119485380Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791482996125483156Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791482996125483156Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
25394573Skmw62_mskeletal muscle weight 62, gastroc (mouse)7106893715110612309Mouse
13524524Bodwtq6_mbody wweight QTL 6 (mouse)7107245693113055693Mouse
4141056Lskcn2_mLSK cell number 2 (mouse)Not determined108482996118693530Mouse
35673311Ari6_mantibody response to influenza 6, day 15, IgG2b (mouse)7108699207115099235Mouse
25394557Skmw64_mskeletal muscle weight 64, soleus (mouse)7108715780114592736Mouse
25394559Skmw63_mskeletal muscle weight 63, TA (mouse)7108791458110612309Mouse
25394556Skmw65_mskeletal muscle weight 65, EDL (mouse)7109059337110612309Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000082517
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7109,645,571 - 109,645,754 (+)Ensembl
GRCm38.p6 Ensembl7110,046,364 - 110,046,547 (+)Ensembl
RefSeq Acc Id: NR_033336
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397109,645,571 - 109,645,754 (+)NCBI
GRCm387110,046,364 - 110,046,547 (+)ENTREZGENE
MGSCv377117,189,878 - 117,190,061 (+)RGD
Celera7110,020,139 - 110,020,322 (+)RGD
cM Map7 ENTREZGENE
Sequence:
Promoters
RGD ID:8665211
Promoter ID:EPDNEW_M10637
Type:single initiation site
Name:Snora23_1
Description:Mus musculus small nucleolar RNA, H/ACA box 23 , small nucleolarRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387110,046,353 - 110,046,413EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000064451 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000082517 ENTREZGENE
MGD MGI:3819494 ENTREZGENE
NCBI Gene 100379145 ENTREZGENE
PhenoGen Snora23 PhenoGen
RNAcentral URS0000663F73 RNACentral