LOC129394412 (olfactory receptor 1L6) - Rat Genome Database

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Pathways
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Gene: LOC129394412 (olfactory receptor 1L6) Pan paniscus
Analyze
Symbol: LOC129394412
Name: olfactory receptor 1L6
RGD ID: 329345387
Description:
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Dog
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21910,980,391 - 10,981,461 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11712,946,751 - 12,948,495 (+)NCBINHGRI_mPanPan1


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC129394412
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21910,980,391 - 10,981,461 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11712,946,751 - 12,948,495 (+)NCBINHGRI_mPanPan1
OR1R1P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38173,385,930 - 3,386,874 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl173,385,930 - 3,386,874 (+)EnsemblGRCh38hg38GRCh38
GRCh37173,289,224 - 3,290,168 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36173,235,790 - 3,237,017 (+)NCBINCBI36Build 36hg18NCBI36
Celera173,302,848 - 3,303,886 (+)NCBICelera
Cytogenetic Map17p13.3NCBI
HuRef173,181,626 - 3,182,664 (+)NCBIHuRef
CHM1_1173,298,172 - 3,299,200 (+)NCBICHM1_1
T2T-CHM13v2.0173,274,869 - 3,275,813 (+)NCBIT2T-CHM13v2.0
Or1r1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391173,874,488 - 73,875,432 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1173,870,793 - 73,881,233 (-)EnsemblGRCm39 Ensembl
GRCm381173,983,662 - 73,984,606 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1173,979,967 - 73,990,407 (-)EnsemblGRCm38mm10GRCm38
MGSCv371173,797,164 - 73,798,108 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361173,799,857 - 73,800,801 (-)NCBIMGSCv36mm8
Celera1181,517,115 - 81,518,059 (-)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1145.69NCBI
Or1r1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81059,388,805 - 59,389,749 (-)NCBIGRCr8
mRatBN7.21058,890,357 - 58,891,301 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1058,890,357 - 58,891,301 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1063,517,425 - 63,518,369 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01063,023,022 - 63,023,966 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01058,517,579 - 58,518,523 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01060,864,522 - 60,865,466 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1060,864,522 - 60,865,466 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01060,601,363 - 60,602,307 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41061,306,719 - 61,307,663 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11061,320,341 - 61,321,286 (-)NCBI
Celera1057,932,938 - 57,933,882 (-)NCBICelera
Cytogenetic Map10q24NCBI
OR1R1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1947,301,778 - 47,302,722 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl947,301,778 - 47,302,722 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha946,455,855 - 46,456,799 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0948,137,714 - 48,138,658 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl948,137,714 - 48,138,658 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1946,901,129 - 46,902,073 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0947,201,723 - 47,202,667 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0947,259,181 - 47,260,125 (+)NCBIUU_Cfam_GSD_1.0
LOC100739378
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11249,514,664 - 49,515,608 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21251,437,098 - 51,437,868 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_055101372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_055101372   ⟹   XP_054957347
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21910,980,391 - 10,981,461 (+)NCBI
NHGRI_mPanPan11712,946,751 - 12,948,495 (+)NCBI
Protein Sequences
Protein RefSeqs XP_054957347 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_054957347   ⟸   XM_055101372


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC129394412 ENTREZGENE