LOC100739378 (olfactory receptor 1L4-like)

Gene: LOC100739378 (olfactory receptor 1L4-like) Sus scrofa

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Symbol:

LOC100739378

Name:

olfactory receptor 1L4-like

RGD ID:

13912653

Description:

ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); signal transduction (inferred); FOUND IN membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	12	49,514,664 - 49,515,608 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	51,437,098 - 51,437,868 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

detection of chemical stimulus involved in sensory perception of smell (IEA)

G protein-coupled receptor signaling pathway (IEA)

signal transduction (IEA)

Cellular Component

membrane (IEA)

plasma membrane (IEA)

Molecular Function

G protein-coupled receptor activity (IEA)

olfactory receptor activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

LOC100739378
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	12	49,514,664 - 49,515,608 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	51,437,098 - 51,437,868 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

OR1R1P
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	3,385,930 - 3,386,874 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	3,385,930 - 3,386,874 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	3,289,224 - 3,290,168 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	3,235,790 - 3,237,017 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	3,302,848 - 3,303,886 (+)	NCBI		Celera
Cytogenetic Map	17	p13.3	NCBI
HuRef	17	3,181,626 - 3,182,664 (+)	NCBI		HuRef
CHM1_1	17	3,298,172 - 3,299,200 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	3,274,869 - 3,275,813 (+)	NCBI		T2T-CHM13v2.0

Or1r1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	73,874,488 - 73,875,432 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	73,870,793 - 73,881,233 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	73,983,662 - 73,984,606 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	73,979,967 - 73,990,407 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	73,797,164 - 73,798,108 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	73,799,857 - 73,800,801 (-)	NCBI		MGSCv36	mm8
Celera	11	81,517,115 - 81,518,059 (-)	NCBI		Celera
Cytogenetic Map	11	B4	NCBI
cM Map	11	45.69	NCBI

Or1r1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	59,388,805 - 59,389,749 (-)	NCBI		GRCr8
mRatBN7.2	10	58,890,357 - 58,891,301 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	58,890,357 - 58,891,301 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	63,517,425 - 63,518,369 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	63,023,022 - 63,023,966 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	58,517,579 - 58,518,523 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	60,864,522 - 60,865,466 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	60,864,522 - 60,865,466 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	60,601,363 - 60,602,307 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	61,306,719 - 61,307,663 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	61,320,341 - 61,321,286 (-)	NCBI
Celera	10	57,932,938 - 57,933,882 (-)	NCBI		Celera
Cytogenetic Map	10	q24	NCBI

LOC129394412
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	10,980,391 - 10,981,461 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	12,946,751 - 12,948,495 (+)	NCBI		NHGRI_mPanPan1

OR1R1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	47,301,778 - 47,302,722 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	47,301,778 - 47,302,722 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	46,455,855 - 46,456,799 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	48,137,714 - 48,138,658 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	48,137,714 - 48,138,658 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	46,901,129 - 46,902,073 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	47,201,723 - 47,202,667 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	47,259,181 - 47,260,125 (+)	NCBI		UU_Cfam_GSD_1.0

Variants

Variants in LOC100739378
21 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013981210	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000082	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_013981210 ⟹ XP_013836664

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	49,514,664 - 49,515,608 (+)	NCBI

Sequence:

show sequence

ATGGCCCTGGCCAATCTCACCTCCACCCCAGAGTTCCTCCTCCTTGGCCTAATGGATGGAACAG
ACATCCATCCACTGTTGTTCCTGCTCTTCCTTGGGGTCTACCTGGTCAATGCCCTGGGCAACCT
GAGCATGGTGGTGGTGGTGAGGTCCGACGGGGCCCTCCGCTCCCCCATGTATTACTTCTTGGGC
CACCTGAGCCTCGTGGACGTCTGCTTTACCACAGTCACAGTCCCCAGACTGCTGGCCGGCCTGC
TCCACCCAGGTCAGGCTGTGTCATTCCAGGGATGCTTTGCCCAGATGTACTTCTTCGTGGCTCT
GGGCATCACCGAGAGCTACCTGCTGGCAGCCATGTCCTATGACCGTGCAGTGGCCGTCTGCCGC
CCCTTGCACTATGGCTCGGTCATGACGCCCTGGCGCTGCACGGCGCTGGTGGGGGCATCTTGGG
CAGTGGCCCACCTGCACTCACTGCTTCACACAGTGCTCATCTCCAAGCTCTCCTACCCACGCTC
CGCCCCCGTGCGCCACTTCTTCTGTGACATGACCGTGATGCTGAGCTTGGCGACCTCGGACACG
TCCGCCGCGGAGACTGCCATCTTCTCTGAGGGCCTGGCCGTGGTGCTGACCCCGCTGCTCCTCG
TGTCCCTGTCCTACGCACGCATCCTGGTCACGGTGCTGGGAGTGCGGTCCGCAGGGGGCCGGCG
CCGCACCTTCTCCACCTGCGGAGCCCACTTGGTGGTGGTGTCACTTTTCTTTGGCTCCATCCTT
TCTGTCTATTTCCGGCCGTCATCTGCCTACTCTGCCCGCTATGACCGCCTGGCCAGCGTGGTCT
ATGCCGTAGTCACACCGACCCTGAACCCTTTCATCTACAGCCTCCGCAACAAAGAAGTTAAGGG
CTCCCTAAAAAGGGGGCTCCGATGGAGGGCGGCGCTCCAAGAGGTGTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_013836664	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00005000156.1
	ENSSSCP00015034223.1
	ENSSSCP00025039441.1
	ENSSSCP00030024003.1
	ENSSSCP00035042709.1
	ENSSSCP00040033385.1
	ENSSSCP00045030215.1
	ENSSSCP00050017406.1
	ENSSSCP00055015046.1
	ENSSSCP00060043732.1
	ENSSSCP00065023117.1
	ENSSSCP00070026291.1

RefSeq Acc Id:

XP_013836664 ⟸ XM_013981210

- UniProtKB:

A0A4X1UD85 (UniProtKB/TrEMBL), A0A8D1L2T7 (UniProtKB/TrEMBL), A0A8D1WRL5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MALANLTSTPEFLLLGLMDGTDIHPLLFLLFLGVYLVNALGNLSMVVVVRSDGALRSPMYYFLG
HLSLVDVCFTTVTVPRLLAGLLHPGQAVSFQGCFAQMYFFVALGITESYLLAAMSYDRAVAVCR
PLHYGSVMTPWRCTALVGASWAVAHLHSLLHTVLISKLSYPRSAPVRHFFCDMTVMLSLATSDT
SAAETAIFSEGLAVVLTPLLLVSLSYARILVTVLGVRSAGGRRRTFSTCGAHLVVVSLFFGSIL
SVYFRPSSAYSARYDRLASVVYAVVTPTLNPFIYSLRNKEVKGSLKRGLRWRAALQEV

hide sequence

Protein Domains

G-protein coupled receptors family 1 profile

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00005000350	UniProtKB/TrEMBL
	ENSSSCG00015063125	UniProtKB/TrEMBL
	ENSSSCG00025065636	UniProtKB/TrEMBL
	ENSSSCG00030037835	UniProtKB/TrEMBL
	ENSSSCG00035074110	UniProtKB/TrEMBL
	ENSSSCG00040057295	UniProtKB/TrEMBL
	ENSSSCG00045025512	UniProtKB/TrEMBL
	ENSSSCG00050031281	UniProtKB/TrEMBL
	ENSSSCG00055009764	UniProtKB/TrEMBL
	ENSSSCG00060073645	UniProtKB/TrEMBL
	ENSSSCG00065038889	UniProtKB/TrEMBL
	ENSSSCG00070016060	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00005000378.1	UniProtKB/TrEMBL
	ENSSSCT00015084378.1	UniProtKB/TrEMBL
	ENSSSCT00025090055.1	UniProtKB/TrEMBL
	ENSSSCT00030052638.1	UniProtKB/TrEMBL
	ENSSSCT00035100543.1	UniProtKB/TrEMBL
	ENSSSCT00040077595.1	UniProtKB/TrEMBL
	ENSSSCT00045043476.1	UniProtKB/TrEMBL
	ENSSSCT00050042057.1	UniProtKB/TrEMBL
	ENSSSCT00055019072.1	UniProtKB/TrEMBL
	ENSSSCT00060100659.1	UniProtKB/TrEMBL
	ENSSSCT00065053163.1	UniProtKB/TrEMBL
	ENSSSCT00070031543.1	UniProtKB/TrEMBL
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	GPCR_Rhodpsn	UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/TrEMBL
	Olfact_rcpt	UniProtKB/TrEMBL
NCBI Gene	LOC100739378	ENTREZGENE
PANTHER	OLFACTORY RECEPTOR	UniProtKB/TrEMBL
	OLFACTORY RECEPTOR 1L6-LIKE	UniProtKB/TrEMBL
Pfam	7tm_4	UniProtKB/TrEMBL
PRINTS	GPCRRHODOPSN	UniProtKB/TrEMBL
	OLFACTORYR	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_2	UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
UniProt	A0A4X1UD85	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1L2T7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1WRL5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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