Matr3 (matrin 3) - Rat Genome Database

Name: Matr3
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Matr3 (matrin 3) Rattus norvegicus

Analyze

Symbol:

Matr3

Name:

matrin 3

RGD ID:

3052

Description:

Predicted to enable identical protein binding activity and miRNA binding activity. Predicted to be involved in activation of innate immune response and post-transcriptional regulation of gene expression. Predicted to act upstream of or within blastocyst formation; heart valve development; and ventricular septum development. Located in nuclear matrix. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 21. Orthologous to human MATR3 (matrin 3); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

matrin-3; nuclear scaffold protein P130/MAT3; P130/MAT3; snhg4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MATR3 (matrin 3)	HGNC	EggNOG, Ensembl, OMA, Treefam
Mus musculus (house mouse):	Matr3 (matrin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Matr3 (matrin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MATR3 (matrin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MATR3 (matrin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Matr3 (matrin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MATR3 (matrin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MATR3 (matrin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Matr3 (matrin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	MATR3 (matrin 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Matr3 (matrin 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	matr3l1.1 (matrin 3-like 1.1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	matr3l1.2 (matrin 3-like 1.2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	matr3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Related Pseudogenes:

Matr3-ps1 Matr3-ps3

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	27,428,190 - 27,474,421 (+)	NCBI		GRCr8
mRatBN7.2	18	27,154,098 - 27,193,212 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	27,163,714 - 27,193,166 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	27,291,153 - 27,320,586 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	28,053,486 - 28,082,679 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	27,388,370 - 27,417,564 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	28,351,691 - 28,390,764 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	28,361,283 - 28,390,717 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	28,074,345 - 28,103,874 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	28,171,639 - 28,215,659 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	28,221,884 - 28,242,302 (+)	NCBI
Celera	18	26,897,382 - 26,926,742 (+)	NCBI		Celera
Cytogenetic Map	18	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amyotrophic lateral sclerosis (ISO)

amyotrophic lateral sclerosis type 21 (ISO,ISS)

autosomal dominant intellectual developmental disorder 31 (ISO)

distal myopathy (ISO)

familial adenomatous polyposis 1 (ISO)

genetic disease (ISO)

Hereditary Neoplastic Syndromes (ISO)

Neurodevelopmental Disorders (ISO)

STING-associated vasculopathy with onset in infancy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,6-dinitrotoluene (EXP)

2-methylcholine (ISO)

3',5'-cyclic UMP (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-chloropropane-1,2-diol (EXP)

3H-1,2-dithiole-3-thione (EXP)

4-hydroxyphenyl retinamide (ISO)

acrolein (ISO)

afimoxifene (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

Aroclor 1254 (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Brodifacoum (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

chlorpyrifos (EXP,ISO)

copper atom (ISO)

copper(0) (ISO)

coumarin (ISO)

DDT (EXP)

dibutyl phthalate (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

enzyme inhibitor (ISO)

ethyl methanesulfonate (ISO)

flavonoids (EXP)

FR900359 (ISO)

fulvestrant (ISO)

gallic acid (ISO)

geldanamycin (ISO)

genistein (ISO)

gentamycin (EXP)

irinotecan (ISO)

ivermectin (ISO)

lead(0) (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

N-methyl-4-phenylpyridinium (ISO)

ozone (ISO)

paracetamol (EXP)

PCB138 (EXP)

pentachlorophenol (ISO)

phenethyl isothiocyanate (EXP)

phenobarbital (ISO)

PhIP (EXP)

raloxifene (ISO)

resveratrol (ISO)

rotenone (EXP)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

succimer (ISO)

tamoxifen (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

tolcapone (EXP)

Tributyltin oxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

activation of innate immune response (ISO)

biological_process (ND)

blastocyst formation (IEA,ISO)

heart valve development (IEA,ISO)

innate immune response (IEA)

post-transcriptional regulation of gene expression (ISO)

ventricular septum development (IEA,ISO)

Cellular Component

nuclear matrix (IDA)

nucleus (IBA,IEA,ISO)

Molecular Function

identical protein binding (ISO)

miRNA binding (ISO,ISS)

protein binding (ISO)

RNA binding (IBA,IEA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Molecular cloning of matrin 3. A 125-kilodalton protein of the nuclear matrix contains an extensive acidic domain.	Belgrader P, etal., J Biol Chem 1991 May 25;266(15):9893-9.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Molecular properties and intracellular localization of rat liver nuclear scaffold protein P130.	Hibino Y, etal., Biochim Biophys Acta. 2006 May;1759(5):195-207. Epub 2006 May 22.
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
7.	GOA pipeline	RGD automated data pipeline
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	Comprehensive gene review and curation	RGD comprehensive gene curation
11.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
12.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data

Additional References at PubMed

PMID:1575753	PMID:8250943	PMID:8357833	PMID:9111204	PMID:9524232	PMID:10860485	PMID:11112453	PMID:16396499	PMID:16641100	PMID:19946888	PMID:21771347	PMID:22082260
PMID:22658674	PMID:22681889	PMID:22871113	PMID:24625528	PMID:25416956	PMID:25574029	PMID:27869233	PMID:28431233	PMID:28712728	PMID:28755400	PMID:29476059	PMID:30597036
PMID:35736640

Genomics

Comparative Map Data

Matr3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	27,428,190 - 27,474,421 (+)	NCBI		GRCr8
mRatBN7.2	18	27,154,098 - 27,193,212 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	27,163,714 - 27,193,166 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	27,291,153 - 27,320,586 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	28,053,486 - 28,082,679 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	27,388,370 - 27,417,564 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	28,351,691 - 28,390,764 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	28,361,283 - 28,390,717 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	28,074,345 - 28,103,874 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	28,171,639 - 28,215,659 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	28,221,884 - 28,242,302 (+)	NCBI
Celera	18	26,897,382 - 26,926,742 (+)	NCBI		Celera
Cytogenetic Map	18	p11	NCBI

MATR3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	139,274,101 - 139,331,677 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	139,293,674 - 139,331,677 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p14 Ensembl	5	139,273,752 - 139,331,671 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	138,609,790 - 138,667,366 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	138,637,691 - 138,694,029 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	138,657,253 - 138,694,023	NCBI
Celera	5	134,731,161 - 134,789,067 (+)	NCBI		Celera
Cytogenetic Map	5	q31.2	NCBI
HuRef	5	133,798,796 - 133,857,165 (+)	NCBI		HuRef
CHM1_1	5	138,042,040 - 138,099,954 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	139,800,176 - 139,857,743 (+)	NCBI		T2T-CHM13v2.0

Matr3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	35,686,462 - 35,724,526 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	35,695,191 - 35,726,888 (+)	Ensembl		GRCm39 Ensembl
GRCm38	18	35,562,158 - 35,592,045 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	35,562,138 - 35,593,835 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	35,721,812 - 35,751,699 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	35,688,242 - 35,717,383 (+)	NCBI		MGSCv36	mm8
Celera	18	36,018,404 - 36,048,039 (+)	NCBI		Celera
Cytogenetic Map	18	B2	NCBI
cM Map	18	19.14	NCBI

Matr3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955418	1,213,503 - 1,269,746 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955418	1,213,503 - 1,269,755 (-)	NCBI	ChiLan1.0	ChiLan1.0

MATR3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	134,560,617 - 134,598,387 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	132,700,169 - 132,737,940 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	134,664,893 - 134,702,566 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	140,788,667 - 140,825,064 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	140,788,709 - 140,825,064 (+)	Ensembl	panpan1.1		panPan2

MATR3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	26,736,728 - 26,790,449 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	26,758,261 - 26,790,449 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	25,527,245 - 25,559,143 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	27,616,211 - 27,648,180 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	27,594,256 - 27,648,043 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	26,323,723 - 26,355,841 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	26,145,651 - 26,177,531 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	26,810,878 - 26,842,761 (+)	NCBI		UU_Cfam_GSD_1.0

Matr3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	153,192,756 - 153,239,429 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936531	8,385,743 - 8,420,836 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936531	8,385,919 - 8,418,753 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MATR3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	141,179,566 - 141,231,015 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	141,179,515 - 141,230,259 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	147,010,375 - 147,060,861 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MATR3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	41,955,451 - 41,992,280 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	41,969,459 - 41,994,233 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	35,898,083 - 35,935,039 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Matr3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624743	32,115,544 - 32,146,921 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624743	32,086,821 - 32,147,079 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Matr3
153 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	107
Count of miRNA genes:	88
Interacting mature miRNAs:	97
Transcripts:	ENSRNOT00000026949
Prediction methods:	Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312598	Bp340	Blood pressure QTL 340		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	1	30558703	Rat
2300180	Bmd67	Bone mineral density QTL 67	4.8	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	18	1	34291613	Rat
2293661	Bss50	Bone structure and strength QTL 50	4.64	0.0003	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	18	1	34291613	Rat
61388	Bp2	Blood pressure QTL 2	3.23		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	1	35374722	Rat
9589153	Insul31	Insulin level QTL 31	7.15	0.05	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	18	1	42547119	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4207941	60377792	Rat
2312568	Glom21	Glomerulus QTL 21	2	0.005	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	5185858	40503530	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	11791518	63636873	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	11791518	83218561	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	11791518	83218561	Rat
61382	Bp46	Blood pressure QTL 46	18.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11941791	31393320	Rat
631264	Scl22	Serum cholesterol level QTL 22	6.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	18	11941791	31393320	Rat
1331766	Bp236	Blood pressure QTL 236	3.022		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	11944299	31359530	Rat
61375	Bp41	Blood pressure QTL 41	2.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	18	11944299	41122201	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944299	52293055	Rat
1358358	Sradr6	Stress Responsive Adrenal Weight QTL 6	2.49		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	18	11944299	59330563	Rat
6903359	Bp355	Blood pressure QTL 355	3.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944544	59796478	Rat
2313082	Bss85	Bone structure and strength QTL 85	0.8	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	18	14951337	59951337	Rat
1358193	Emca2	Estrogen-induced mammary cancer QTL 2	1.6		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	18	18007599	63571040	Rat
1331735	Rf44	Renal function QTL 44	2.981		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	18	18234564	31359530	Rat
1331775	Bp235	Blood pressure QTL 235	3.201		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	18234564	31359530	Rat
1600373	Mamtr6	Mammary tumor resistance QTL 6			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	18	19278901	83218561	Rat
1331741	Bp232	Blood pressure QTL 232	3.59112		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	21372893	83213037	Rat
1641923	Colcr8	Colorectal carcinoma resistance QTL 8	3.1	0.0014	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	22066242	52293055	Rat
1331733	Bp233	Blood pressure QTL 233	3.97196		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	24796977	79788953	Rat
2325839	Bp348	Blood pressure QTL 348		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	25570985	70570985	Rat
12904673	Cm127	Cardiac mass QTL 127		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	26548082	46969551	Rat
12904675	Am19	Aortic mass QTL 19		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	26548082	46969551	Rat
12904677	Kidm72	Kidney mass QTL 72		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	26548082	46969551	Rat
12904668	Bw188	Body weight QTL 188		0.03	body mass (VT:0001259)	body weight (CMO:0000012)	18	26548082	46969551	Rat
12904669	Cm125	Cardiac mass QTL 125		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	26548082	46969551	Rat
12904670	Cm126	Cardiac mass QTL 126		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	26548082	46969551	Rat
2301413	Bp318	Blood pressure QTL 318		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	26548082	46969551	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	42	57	41	19	41	8	10	74	35	41	11	8
Low		1						1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_019149	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600887	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277176	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277178	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277180	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277181	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277182	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277186	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB205483	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC135285	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC062231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC168723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213524	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230646	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234627	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ235016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	LC420149	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M63485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000026949 ⟹ ENSRNOP00000026949

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	27,163,714 - 27,193,166 (+)	Ensembl
Rnor_6.0 Ensembl	18	28,361,283 - 28,390,696 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000083993 ⟹ ENSRNOP00000073436

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	18	28,370,085 - 28,390,717 (+)	Ensembl

RefSeq Acc Id:

NM_019149 ⟹ NP_062022

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,437,824 - 27,467,257 (+)	NCBI
mRatBN7.2	18	27,163,729 - 27,193,164 (+)	NCBI
Rnor_6.0	18	28,361,283 - 28,390,716 (+)	NCBI
Rnor_5.0	18	28,074,345 - 28,103,874 (+)	NCBI
RGSC_v3.4	18	28,171,639 - 28,215,659 (+)	RGD
Celera	18	26,897,382 - 26,926,742 (+)	NCBI

Sequence:

show sequence

GGGAGCCTCCGCGTCCCGCTCGCTGAGAGAGGTATCTCTCCTTTTCCCTCTCCCTTCCCCTAAG
AGTTGTCTGCTGGTTCTCAGCTTGAAGAAGATTCTACAGTCCTTATTGATCCTTTTTCTTGGCG
TTACCATTTTTGAAGCAAAGTTAACCTAGCTTTCTAGTTTGAGCTTTCTTTTTGGCCGTCTTTT
AAAACATTTTTTTTTTGATCTATAAAATAGACAAGAGATAGTTCTACAATGTCCAAGTCATTCC
AGCAGTCATCTCTCGGTAGGGATTCACAGGGTCATGGGCGTGACCTGTCTGCAGCAGGAATAGG
CCTTCTTGCTGCTGCTACCCAGTCTTTAAGTATGCCAGCATCTCTTGGAAGGATGAACCAGGGT
ACTGCACGCCTTGCTAGCTTAATGAATCTTGGAATGAGTTCTTCATTGAATCAACAAGGAGCTC
ATAGTGCACTGTCTTCTGCTAGTACTTCTTCCCATAATTTGCAGTCTATATTTAACATTGGAAG
TAGAGGTCCACTCCCTTTGTCTTCTCAACACCGTGGAGATACAGACCAGGCCAGTAATATTTTG
GCCAGCTTTGGTCTGTCTGCTAGAGACTTAGATGAACTGAGTCGTTATCCAGAGGACAAGATTA
CTCCTGAGAACTTGCCCCAAATTCTTCTACAGCTTAAAAGGAGGAGAACTGAAGAAGGCCCTAC
ATTGAGTTATGGTAGAGATGGCAGATCTGCTACACGGGAGCCACCATACAGAGTACCTAGGGAT
GATTGGGAAGAAAAAAGGCATTTTAGAAGAGATAGTTTTGATGATCGTGGTCCTAGTCTCAACC
CAGTGCTTGATTATGACCATGGAAGTCGTTCTCAAGAATCTGGTTATTATGACAGAATGGATTA
TGAAGATGACAGATTAAGAGATGGAGAAAGGTGTAGGGATGATTCTTTTTTTGGTGAGACCTCG
CATAACTATCATAAATTTGACAGTGAGTATGAGAGAATGGGACGTGGTCCTGGCCCCTTACAAG
AGAGATCTCTCTTTGAGAAAAAGAGGGGCGCTCCTCCAAGTAGCAATATTGAAGACTTCCATGG
ACTCTTACCGAAGGGTTATCCCCATCTGTGCTCTATATGTGATTTGCCAGTTCATTCTAATAAG
GAGTGGAGTCAACATATCAATGGAGCAAGTCACAGTCGTCGATGCCAGCTTCTTCTTGAAATCT
ACCCAGAATGGAATCCTGACAATGATACTGGACACACAATGGGTGATCCATTCATGCTGCAGCA
GTCAACAAACCCAGCACCGGGAATTCTGGGACCGCCACCTCCTTCATTTCATCTTGGAGGACCA
GCAGTTGGACCAAGAGGAAATCTGGGTGCTGGTAATGGGAACCTACAGGGACCAAGACACATGC
AAAAAGGCAGAGTGGAAACCAGCCGAGTTGTTCACATTATGGATTTTCAGCGAGGAAAAAACTT
GAGATACCAGCTATTACAACTGGTAGAACCATTTGGAGTCATTTCAAATCATCTGATTCTAAAT
AAAATTAATGAGGCATTTATTGAAATGGCGACCACAGAAGATGCTCAGGCTGCTGTGGATTATT
ATACAACTACACCAGCATTAGTGTTTGGCAAGCCAGTGAGAGTTCATTTATCCCAGAAGTATAA
GAGAATAAAGAAACCTGAAGGAAAACCAGATCAGAAGTTTGATCAAAAGCAAGAACTTGGACGT
GTGATACATCTCAGCAATTTACCTCATTCTGGCTATTCTGACAGTGCTGTCCTCAAGCTTGCAG
AGCCTTATGGGAAAATAAAAAATTATATATTGATGAGGATGAAAAGTCAGGCTTTTATTGAGAT
GGAAACCAGAGAAGATGCAATGGCAATGGTTGACCACTGTCTAAAGAAGGCACTTTGGTTTCAG
GGAAGATGTGTTAAAGTTGACTTGTCTGAGAAATATAAAAAACTGGTGCTGAGGATTCCTAACA
GAGGCATTGACTTACTGAAAAAAGATAAATCTCGGAAAAGATCCTATTCTCCAGATGGAAAAGA
ATCTCCAAGTGATAAGAAGTCCAAAACTGATGGTGCTCAGAAGACTGAGAATCCAGCTGAGGGT
AAAGAACAAGAAGAGAAGTCGGGTGAGGATGGTGAGAAAGACACCAAGGATGACCAGACAGAAC
AGGAGCCCAGTATGCTTCTTGAATCTGAAGATGAATTGCTTGTCGATGAGGAAGAAGCTGCAGC
ACTACTAGAAAGTGGAAGCTCAGTGGGTGATGAGACTGATCTTGCTAATTTAGGGGATGTATCT
TCTGATGGGAAAAAGGAGCCTTCAGATAAAGCTGTGAAAAAAGATGCAAGTGCAACATCCAAGA
AAAAACTTAAAAAGGTGGACAAGATTGAGGAACTTGATCAAGAAAATGAAGCTGCATTGGAAAA
TGGGATTAAAAATGAGGAAAATACAGAACCAGGTGCTGAATCTGCTGAGAATGCTGATGATCCA
AACAAAGACGCAAGTGATAATTCAGATGGCCAAAATGATGAGAACAAGGAGGACTATACAATTC
CAGATGAGTATAGAATTGGACCATATCAGCCTAATGTTCCTGTTGGTATAGACTATGTGATACC
TAAAACAGGGTTTTACTGTAAGCTGTGTTCACTCTTTTATACAAATGAAGAAGTTGCAAAGAAT
ACTCATTGCAGCAGCCTTCCTCATTATCAGAAATTAAAGAAATTTCTGAATAAATTGGCAGAAG
AACGGAGGCAGAAGAAGGAAACTTAAGATGTACAAGAAGCTTAATTATTTCAAAGAAAACAATG
GTTCTTTGATTTTAATGTTAACCTTTTTTAAATACAATACTGATAGTTAGAAAACTACTGTACT
CTTTTGTTTTAGTGGAAAATAATAGATGTCTGTTCATGTGTTTAAGTGTTATAGCAAAAAGTAC
ACATACGGTTAAGTTAATGAAAAAGTTTTTGTTTCATCAGTGACAACAGACAAAAGTACTTCCT
AGAGATTTGACTGTTGTAAGTAAGCTATGGAAAACAACTTGCACCACTAAGAGAAAGATAACAT
AGAACCATTCAGAAAACTGAAATTTAGTAGTTTAAGGCTTCAAAGAAATGTCAACTTTTGATTC
CATTCAATAAAGTACAAAACCAATTGTATTTTTTATTACTTTTCATCTGAAACATTCCACATTT
TAATCTGAGCCTTGCAGACTTTTCATTTGACTTTGGAAGCTGTTTCGGTTGCATTGCATTTTTA
GAGAACTTCATTCATGTGAGATTGGAATTCAAATGCAGGTGCAGTTTTCTTTTAATGTCATGCT
GTTTAGATGATAAGATATATTAAGTAATTGGCTTTAGATTTGTAATTTTTTTCCTCTGAGTTCC
TGCTAGGTTTTGTATTCTAGTAGTCAATGTTATTTCAGTGAAATGTAAAAATATTACCGTTCTC
TTTGACCAGTATTAATTTCTTGAGAACCTATTGCTTGTCACTTGAATCCTGTAGCTGTCAAACA
TCTCCGGTATAAGCAACATTTGATTTTTGAAGTGTGTAAACCATCTATATTTTCAAGATGTAAT
TTTACATTTCTGCATTTTAAAAGTTTGGCCATAATTCTAGAAGCACGCTTCTAATTCATGTACC
TGCACATGTGACCTTTGTGAGCAGAAATTTGCATGTATAATCTGTGTTTACTTGTAACTCTCTG
GTTATATACTGCTTATATCTGTGGATTCAAGTTACTGAAGTGAATACCAATAAAAAAAAAAACA
ACCT

hide sequence

RefSeq Acc Id:

XM_006254534 ⟹ XP_006254596

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,437,730 - 27,467,258 (+)	NCBI
mRatBN7.2	18	27,163,644 - 27,193,212 (+)	NCBI
Rnor_6.0	18	28,361,227 - 28,390,764 (+)	NCBI
Rnor_5.0	18	28,074,345 - 28,103,874 (+)	NCBI

Sequence:

show sequence

ATTTGGTTCTCGTTCAGTCACCACCTCCTGCCAGCGCCGTTGCTGCGGGGGATTGTGGGAGCCT
CCGCGTCCCGCTCGCTGAGAGAGAGTTGTCTGCTGGTTCTCAGCTTGAAGAAGATTCTACAGTC
CTTATTGATCCTTTTTCTTGGCGTTACCATTTTTGAAGCAAAGTTAACCTAGCTTTCTAGTTTG
AGCTTTCTTTTTGGCCGTCTTTTAAAACATTTTTTTTTTGATCTATAAAATAGACAAGAGATAG
TTCTACAATGTCCAAGTCATTCCAGCAGTCATCTCTCGGTAGGGATTCACAGGGTCATGGGCGT
GACCTGTCTGCAGCAGGAATAGGCCTTCTTGCTGCTGCTACCCAGTCTTTAAGTATGCCAGCAT
CTCTTGGAAGGATGAACCAGGGTACTGCACGCCTTGCTAGCTTAATGAATCTTGGAATGAGTTC
TTCATTGAATCAACAAGGAGCTCATAGTGCACTGTCTTCTGCTAGTACTTCTTCCCATAATTTG
CAGTCTATATTTAACATTGGAAGTAGAGGTCCACTCCCTTTGTCTTCTCAACACCGTGGAGATA
CAGACCAGGCCAGTAATATTTTGGCCAGCTTTGGTCTGTCTGCTAGAGACTTAGATGAACTGAG
TCGTTATCCAGAGGACAAGATTACTCCTGAGAACTTGCCCCAAATTCTTCTACAGCTTAAAAGG
AGGAGAACTGAAGAAGGCCCTACATTGAGTTATGGTAGAGATGGCAGATCTGCTACACGGGAGC
CACCATACAGAGTACCTAGGGATGATTGGGAAGAAAAAAGGCATTTTAGAAGAGATAGTTTTGA
TGATCGTGGTCCTAGTCTCAACCCAGTGCTTGATTATGACCATGGAAGTCGTTCTCAAGAATCT
GGTTATTATGACAGAATGGATTATGAAGATGACAGATTAAGAGATGGAGAAAGGTGTAGGGATG
ATTCTTTTTTTGGTGAGACCTCGCATAACTATCATAAATTTGACAGTGAGTATGAGAGAATGGG
ACGTGGTCCTGGCCCCTTACAAGAGAGATCTCTCTTTGAGAAAAAGAGGGGCGCTCCTCCAAGT
AGCAATATTGAAGACTTCCATGGACTCTTACCGAAGGGTTATCCCCATCTGTGCTCTATATGTG
ATTTGCCAGTTCATTCTAATAAGGAGTGGAGTCAACATATCAATGGAGCAAGTCACAGTCGTCG
ATGCCAGCTTCTTCTTGAAATCTACCCAGAATGGAATCCTGACAATGATACTGGACACACAATG
GGTGATCCATTCATGCTGCAGCAGTCAACAAACCCAGCACCGGGAATTCTGGGACCGCCACCTC
CTTCATTTCATCTTGGAGGACCAGCAGTTGGACCAAGAGGAAATCTGGGTGCTGGTAATGGGAA
CCTACAGGGACCAAGACACATGCAAAAAGGCAGAGTGGAAACCAGCCGAGTTGTTCACATTATG
GATTTTCAGCGAGGAAAAAACTTGAGATACCAGCTATTACAACTGGTAGAACCATTTGGAGTCA
TTTCAAATCATCTGATTCTAAATAAAATTAATGAGGCATTTATTGAAATGGCGACCACAGAAGA
TGCTCAGGCTGCTGTGGATTATTATACAACTACACCAGCATTAGTGTTTGGCAAGCCAGTGAGA
GTTCATTTATCCCAGAAGTATAAGAGAATAAAGAAACCTGAAGGAAAACCAGATCAGAAGTTTG
ATCAAAAGCAAGAACTTGGACGTGTGATACATCTCAGCAATTTACCTCATTCTGGCTATTCTGA
CAGTGCTGTCCTCAAGCTTGCAGAGCCTTATGGGAAAATAAAAAATTATATATTGATGAGGATG
AAAAGTCAGGCTTTTATTGAGATGGAAACCAGAGAAGATGCAATGGCAATGGTTGACCACTGTC
TAAAGAAGGCACTTTGGTTTCAGGGAAGATGTGTTAAAGTTGACTTGTCTGAGAAATATAAAAA
ACTGGTGCTGAGGATTCCTAACAGAGGCATTGACTTACTGAAAAAAGATAAATCTCGGAAAAGA
TCCTATTCTCCAGATGGAAAAGAATCTCCAAGTGATAAGAAGTCCAAAACTGATGGTGCTCAGA
AGACTGAGAATCCAGCTGAGGGTAAAGAACAAGAAGAGAAGTCGGGTGAGGATGGTGAGAAAGA
CACCAAGGATGACCAGACAGAACAGGAGCCCAGTATGCTTCTTGAATCTGAAGATGAATTGCTT
GTCGATGAGGAAGAAGCTGCAGCACTACTAGAAAGTGGAAGCTCAGTGGGTGATGAGACTGATC
TTGCTAATTTAGGGGATGTATCTTCTGATGGGAAAAAGGAGCCTTCAGATAAAGCTGTGAAAAA
AGATGCAAGTGCAACATCCAAGAAAAAACTTAAAAAGGTGGACAAGATTGAGGAACTTGATCAA
GAAAATGAAGCTGCATTGGAAAATGGGATTAAAAATGAGGAAAATACAGAACCAGGTGCTGAAT
CTGCTGAGAATGCTGATGATCCAAACAAAGACGCAAGTGATAATTCAGATGGCCAAAATGATGA
GAACAAGGAGGACTATACAATTCCAGATGAGTATAGAATTGGACCATATCAGCCTAATGTTCCT
GTTGGTATAGACTATGTGATACCTAAAACAGGGTTTTACTGTAAGCTGTGTTCACTCTTTTATA
CAAATGAAGAAGTTGCAAAGAATACTCATTGCAGCAGCCTTCCTCATTATCAGAAATTAAAGAA
ATTTCTGAATAAATTGGCAGAAGAACGGAGGCAGAAGAAGGAAACTTAAGATGTACAAGAAGCT
TAATTATTTCAAAGAAAACAATGGTTCTTTGATTTTAATGTTAACCTTTTTTAAATACAATACT
GATAGTTAGAAAACTACTGTACTCTTTTGTTTTAGTGGAAAATAATAGATGTCTGTTCATGTGT
TTAAGTGTTATAGCAAAAAGTACACATACGGTTAAGTTAATGAAAAAGTTTTTGTTTCATCAGT
GACAACAGACAAAAGTACTTCCTAGAGATTTGACTGTTGTAAGTAAGCTATGGAAAACAACTTG
CACCACTAAGAGAAAGATAACATAGAACCATTCAGAAAACTGAAATTTAGTAGTTTAAGGCTTC
AAAGAAATGTCAACTTTTGATTCCATTCAATAAAGTACAAAACCAATTGTATTTTTTATTACTT
TTCATCTGAAACATTCCACATTTTAATCTGAGCCTTGCAGACTTTTCATTTGACTTTGGAAGCT
GTTTCGGTTGCATTGCATTTTTAGAGAACTTCATTCATGTGAGATTGGAATTCAAATGCAGGTG
CAGTTTTCTTTTAATGTCATGCTGTTTAGATGATAAGATATATTAAGTAATTGGCTTTAGATTT
GTAATTTTTTTCCTCTGAGTTCCTGCTAGGTTTTGTATTCTAGTAGTCAATGTTATTTCAGTGA
AATGTAAAAATATTACCGTTCTCTTTGACCAGTATTAATTTCTTGAGAACCTATTGCTTGTCAC
TTGAATCCTGTAGCTGTCAAACATCTCCGGTATAAGCAACATTTGATTTTTGAAGTGTGTAAAC
CATCTATATTTTCAAGATGTAATTTTACATTTCTGCATTTTAAAAGTTTGGCCATAATTCTAGA
AGCACGCTTCTAATTCATGTACCTGCACATGTGACCTTTGTGAGCAGAAATTTGCATGTATAAT
CTGTGTTTACTTGTAACTCTCTGGTTATATACTGCTTATATCTGTGGATTCAAGTTACTGAAGT
GAATACCAATAAAAAAAAAAACAACCTAGGCCATGTTGATTGGTTGGTTAAACATGTTTGGAAT
GTTAACCAAAA

hide sequence

RefSeq Acc Id:

XM_017600886 ⟹ XP_017456375

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,428,190 - 27,467,258 (+)	NCBI
mRatBN7.2	18	27,154,098 - 27,193,212 (+)	NCBI
Rnor_6.0	18	28,351,691 - 28,390,764 (+)	NCBI

Sequence:

show sequence

CGGCTTGGTCCGGGCTTCCCTTTCCACCGCGGCCTCTGCCCGGGCTGCTGTGTCCTGCGGAGCT
CCGAGCACGTGCAGTGCCCAGCTGCCAGTTTGAGGAGATGCTTGCCCTGGATGCCTTGAAAGTA
GGGTGGTCTTCACCAGGCTAAAAGAATGATTGGGGATTTAGCTCAGCGGTAGAGCGCCTGCCTA
GCAAGAGGAAGGCCCTGGAAGGCCCTGGGTTCGGTCCCCAGCTCCGGAAAAGAAAAGAAAACAA
AACAAAACAAAAAAGAATGATCCACAGCAGGGTGCTGTGGTTCTCAGAGCTGAATGAGATCTGC
GTCCATCCAGGACTTCAGGTTTCTGACTACACCGGGTTTTGAGTAATAGTTGTCTGCTGGTTCT
CAGCTTGAAGAAGATTCTACAGTCCTTATTGATCCTTTTTCTTGGCGTTACCATTTTTGAAGCA
AAGTTAACCTAGCTTTCTAGTTTGAGCTTTCTTTTTGGCCGTCTTTTAAAACATTTTTTTTTTG
ATCTATAAAATAGACAAGAGATAGTTCTACAATGTCCAAGTCATTCCAGCAGTCATCTCTCGGT
AGGGATTCACAGGGTCATGGGCGTGACCTGTCTGCAGCAGGAATAGGCCTTCTTGCTGCTGCTA
CCCAGTCTTTAAGTATGCCAGCATCTCTTGGAAGGATGAACCAGGGTACTGCACGCCTTGCTAG
CTTAATGAATCTTGGAATGAGTTCTTCATTGAATCAACAAGGAGCTCATAGTGCACTGTCTTCT
GCTAGTACTTCTTCCCATAATTTGCAGTCTATATTTAACATTGGAAGTAGAGGTCCACTCCCTT
TGTCTTCTCAACACCGTGGAGATACAGACCAGGCCAGTAATATTTTGGCCAGCTTTGGTCTGTC
TGCTAGAGACTTAGATGAACTGAGTCGTTATCCAGAGGACAAGATTACTCCTGAGAACTTGCCC
CAAATTCTTCTACAGCTTAAAAGGAGGAGAACTGAAGAAGGCCCTACATTGAGTTATGGTAGAG
ATGGCAGATCTGCTACACGGGAGCCACCATACAGAGTACCTAGGGATGATTGGGAAGAAAAAAG
GCATTTTAGAAGAGATAGTTTTGATGATCGTGGTCCTAGTCTCAACCCAGTGCTTGATTATGAC
CATGGAAGTCGTTCTCAAGAATCTGGTTATTATGACAGAATGGATTATGAAGATGACAGATTAA
GAGATGGAGAAAGGTGTAGGGATGATTCTTTTTTTGGTGAGACCTCGCATAACTATCATAAATT
TGACAGTGAGTATGAGAGAATGGGACGTGGTCCTGGCCCCTTACAAGAGAGATCTCTCTTTGAG
AAAAAGAGGGGCGCTCCTCCAAGTAGCAATATTGAAGACTTCCATGGACTCTTACCGAAGGGTT
ATCCCCATCTGTGCTCTATATGTGATTTGCCAGTTCATTCTAATAAGGAGTGGAGTCAACATAT
CAATGGAGCAAGTCACAGTCGTCGATGCCAGCTTCTTCTTGAAATCTACCCAGAATGGAATCCT
GACAATGATACTGGACACACAATGGGTGATCCATTCATGCTGCAGCAGTCAACAAACCCAGCAC
CGGGAATTCTGGGACCGCCACCTCCTTCATTTCATCTTGGAGGACCAGCAGTTGGACCAAGAGG
AAATCTGGGTGCTGGTAATGGGAACCTACAGGGACCAAGACACATGCAAAAAGGCAGAGTGGAA
ACCAGCCGAGTTGTTCACATTATGGATTTTCAGCGAGGAAAAAACTTGAGATACCAGCTATTAC
AACTGGTAGAACCATTTGGAGTCATTTCAAATCATCTGATTCTAAATAAAATTAATGAGGCATT
TATTGAAATGGCGACCACAGAAGATGCTCAGGCTGCTGTGGATTATTATACAACTACACCAGCA
TTAGTGTTTGGCAAGCCAGTGAGAGTTCATTTATCCCAGAAGTATAAGAGAATAAAGAAACCTG
AAGGAAAACCAGATCAGAAGTTTGATCAAAAGCAAGAACTTGGACGTGTGATACATCTCAGCAA
TTTACCTCATTCTGGCTATTCTGACAGTGCTGTCCTCAAGCTTGCAGAGCCTTATGGGAAAATA
AAAAATTATATATTGATGAGGATGAAAAGTCAGGCTTTTATTGAGATGGAAACCAGAGAAGATG
CAATGGCAATGGTTGACCACTGTCTAAAGAAGGCACTTTGGTTTCAGGGAAGATGTGTTAAAGT
TGACTTGTCTGAGAAATATAAAAAACTGGTGCTGAGGATTCCTAACAGAGGCATTGACTTACTG
AAAAAAGATAAATCTCGGAAAAGATCCTATTCTCCAGATGGAAAAGAATCTCCAAGTGATAAGA
AGTCCAAAACTGATGGTGCTCAGAAGACTGAGAATCCAGCTGAGGGTAAAGAACAAGAAGAGAA
GTCGGGTGAGGATGGTGAGAAAGACACCAAGGATGACCAGACAGAACAGGAGCCCAGTATGCTT
CTTGAATCTGAAGATGAATTGCTTGTCGATGAGGAAGAAGCTGCAGCACTACTAGAAAGTGGAA
GCTCAGTGGGTGATGAGACTGATCTTGCTAATTTAGGGGATGTATCTTCTGATGGGAAAAAGGA
GCCTTCAGATAAAGCTGTGAAAAAAGATGCAAGTGCAACATCCAAGAAAAAACTTAAAAAGGTG
GACAAGATTGAGGAACTTGATCAAGAAAATGAAGCTGCATTGGAAAATGGGATTAAAAATGAGG
AAAATACAGAACCAGGTGCTGAATCTGCTGAGAATGCTGATGATCCAAACAAAGACGCAAGTGA
TAATTCAGATGGCCAAAATGATGAGAACAAGGAGGACTATACAATTCCAGATGAGTATAGAATT
GGACCATATCAGCCTAATGTTCCTGTTGGTATAGACTATGTGATACCTAAAACAGGGTTTTACT
GTAAGCTGTGTTCACTCTTTTATACAAATGAAGAAGTTGCAAAGAATACTCATTGCAGCAGCCT
TCCTCATTATCAGAAATTAAAGAAATTTCTGAATAAATTGGCAGAAGAACGGAGGCAGAAGAAG
GAAACTTAAGATGTACAAGAAGCTTAATTATTTCAAAGAAAACAATGGTTCTTTGATTTTAATG
TTAACCTTTTTTAAATACAATACTGATAGTTAGAAAACTACTGTACTCTTTTGTTTTAGTGGAA
AATAATAGATGTCTGTTCATGTGTTTAAGTGTTATAGCAAAAAGTACACATACGGTTAAGTTAA
TGAAAAAGTTTTTGTTTCATCAGTGACAACAGACAAAAGTACTTCCTAGAGATTTGACTGTTGT
AAGTAAGCTATGGAAAACAACTTGCACCACTAAGAGAAAGATAACATAGAACCATTCAGAAAAC
TGAAATTTAGTAGTTTAAGGCTTCAAAGAAATGTCAACTTTTGATTCCATTCAATAAAGTACAA
AACCAATTGTATTTTTTATTACTTTTCATCTGAAACATTCCACATTTTAATCTGAGCCTTGCAG
ACTTTTCATTTGACTTTGGAAGCTGTTTCGGTTGCATTGCATTTTTAGAGAACTTCATTCATGT
GAGATTGGAATTCAAATGCAGGTGCAGTTTTCTTTTAATGTCATGCTGTTTAGATGATAAGATA
TATTAAGTAATTGGCTTTAGATTTGTAATTTTTTTCCTCTGAGTTCCTGCTAGGTTTTGTATTC
TAGTAGTCAATGTTATTTCAGTGAAATGTAAAAATATTACCGTTCTCTTTGACCAGTATTAATT
TCTTGAGAACCTATTGCTTGTCACTTGAATCCTGTAGCTGTCAAACATCTCCGGTATAAGCAAC
ATTTGATTTTTGAAGTGTGTAAACCATCTATATTTTCAAGATGTAATTTTACATTTCTGCATTT
TAAAAGTTTGGCCATAATTCTAGAAGCACGCTTCTAATTCATGTACCTGCACATGTGACCTTTG
TGAGCAGAAATTTGCATGTATAATCTGTGTTTACTTGTAACTCTCTGGTTATATACTGCTTATA
TCTGTGGATTCAAGTTACTGAAGTGAATACCAATAAAAAAAAAAACAACCTAGGCCATGTTGAT
TGGTTGGTTAAACATGTTTGGAATGTTAACCAAAA

hide sequence

RefSeq Acc Id:

XM_017600887 ⟹ XP_017456376

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,437,959 - 27,467,258 (+)	NCBI
mRatBN7.2	18	27,163,891 - 27,193,212 (+)	NCBI
Rnor_6.0	18	28,361,365 - 28,390,764 (+)	NCBI

Sequence:

show sequence

AGAGTCCGGGTGGGTGGCTGGGGGCTCTCTGCGTCTTTTCAGAGCCGGACGGCCGCCGTGGCTG
AGGCTGTAGGGAGCTGGCACGCCGCTCCTGCTCTCTCCGGCTCGTCCGTTCTGCCTCCTTCGGC
GCTGCGTATGTGAGCCGCCCGAGCGGCGGCCGCCATGTTAGGAGTGTAGTGGCGGCGCAGCCTG
CCTCCTCGGGCGGCGGAGGTGAGCAGTTGTAGTGGAAGAGTTGTCTGCTGGTTCTCAGCTTGAA
GAAGATTCTACAGTCCTTATTGATCCTTTTTCTTGGCGTTACCATTTTTGAAGCAAAGTTAACC
TAGCTTTCTAGTTTGAGCTTTCTTTTTGGCCGTCTTTTAAAACATTTTTTTTTTGATCTATAAA
ATAGACAAGAGATAGTTCTACAATGTCCAAGTCATTCCAGCAGTCATCTCTCGGTAGGGATTCA
CAGGGTCATGGGCGTGACCTGTCTGCAGCAGGAATAGGCCTTCTTGCTGCTGCTACCCAGTCTT
TAAGTATGCCAGCATCTCTTGGAAGGATGAACCAGGGTACTGCACGCCTTGCTAGCTTAATGAA
TCTTGGAATGAGTTCTTCATTGAATCAACAAGGAGCTCATAGTGCACTGTCTTCTGCTAGTACT
TCTTCCCATAATTTGCAGTCTATATTTAACATTGGAAGTAGAGGTCCACTCCCTTTGTCTTCTC
AACACCGTGGAGATACAGACCAGGCCAGTAATATTTTGGCCAGCTTTGGTCTGTCTGCTAGAGA
CTTAGATGAACTGAGTCGTTATCCAGAGGACAAGATTACTCCTGAGAACTTGCCCCAAATTCTT
CTACAGCTTAAAAGGAGGAGAACTGAAGAAGGCCCTACATTGAGTTATGGTAGAGATGGCAGAT
CTGCTACACGGGAGCCACCATACAGAGTACCTAGGGATGATTGGGAAGAAAAAAGGCATTTTAG
AAGAGATAGTTTTGATGATCGTGGTCCTAGTCTCAACCCAGTGCTTGATTATGACCATGGAAGT
CGTTCTCAAGAATCTGGTTATTATGACAGAATGGATTATGAAGATGACAGATTAAGAGATGGAG
AAAGGTGTAGGGATGATTCTTTTTTTGGTGAGACCTCGCATAACTATCATAAATTTGACAGTGA
GTATGAGAGAATGGGACGTGGTCCTGGCCCCTTACAAGAGAGATCTCTCTTTGAGAAAAAGAGG
GGCGCTCCTCCAAGTAGCAATATTGAAGACTTCCATGGACTCTTACCGAAGGGTTATCCCCATC
TGTGCTCTATATGTGATTTGCCAGTTCATTCTAATAAGGAGTGGAGTCAACATATCAATGGAGC
AAGTCACAGTCGTCGATGCCAGCTTCTTCTTGAAATCTACCCAGAATGGAATCCTGACAATGAT
ACTGGACACACAATGGGTGATCCATTCATGCTGCAGCAGTCAACAAACCCAGCACCGGGAATTC
TGGGACCGCCACCTCCTTCATTTCATCTTGGAGGACCAGCAGTTGGACCAAGAGGAAATCTGGG
TGCTGGTAATGGGAACCTACAGGGACCAAGACACATGCAAAAAGGCAGAGTGGAAACCAGCCGA
GTTGTTCACATTATGGATTTTCAGCGAGGAAAAAACTTGAGATACCAGCTATTACAACTGGTAG
AACCATTTGGAGTCATTTCAAATCATCTGATTCTAAATAAAATTAATGAGGCATTTATTGAAAT
GGCGACCACAGAAGATGCTCAGGCTGCTGTGGATTATTATACAACTACACCAGCATTAGTGTTT
GGCAAGCCAGTGAGAGTTCATTTATCCCAGAAGTATAAGAGAATAAAGAAACCTGAAGGAAAAC
CAGATCAGAAGTTTGATCAAAAGCAAGAACTTGGACGTGTGATACATCTCAGCAATTTACCTCA
TTCTGGCTATTCTGACAGTGCTGTCCTCAAGCTTGCAGAGCCTTATGGGAAAATAAAAAATTAT
ATATTGATGAGGATGAAAAGTCAGGCTTTTATTGAGATGGAAACCAGAGAAGATGCAATGGCAA
TGGTTGACCACTGTCTAAAGAAGGCACTTTGGTTTCAGGGAAGATGTGTTAAAGTTGACTTGTC
TGAGAAATATAAAAAACTGGTGCTGAGGATTCCTAACAGAGGCATTGACTTACTGAAAAAAGAT
AAATCTCGGAAAAGATCCTATTCTCCAGATGGAAAAGAATCTCCAAGTGATAAGAAGTCCAAAA
CTGATGGTGCTCAGAAGACTGAGAATCCAGCTGAGGGTAAAGAACAAGAAGAGAAGTCGGGTGA
GGATGGTGAGAAAGACACCAAGGATGACCAGACAGAACAGGAGCCCAGTATGCTTCTTGAATCT
GAAGATGAATTGCTTGTCGATGAGGAAGAAGCTGCAGCACTACTAGAAAGTGGAAGCTCAGTGG
GTGATGAGACTGATCTTGCTAATTTAGGGGATGTATCTTCTGATGGGAAAAAGGAGCCTTCAGA
TAAAGCTGTGAAAAAAGATGCAAGTGCAACATCCAAGAAAAAACTTAAAAAGGTGGACAAGATT
GAGGAACTTGATCAAGAAAATGAAGCTGCATTGGAAAATGGGATTAAAAATGAGGAAAATACAG
AACCAGGTGCTGAATCTGCTGAGAATGCTGATGATCCAAACAAAGACGCAAGTGATAATTCAGA
TGGCCAAAATGATGAGAACAAGGAGGACTATACAATTCCAGATGAGTATAGAATTGGACCATAT
CAGCCTAATGTTCCTGTTGGTATAGACTATGTGATACCTAAAACAGGGTTTTACTGTAAGCTGT
GTTCACTCTTTTATACAAATGAAGAAGTTGCAAAGAATACTCATTGCAGCAGCCTTCCTCATTA
TCAGAAATTAAAGAAATTTCTGAATAAATTGGCAGAAGAACGGAGGCAGAAGAAGGAAACTTAA
GATGTACAAGAAGCTTAATTATTTCAAAGAAAACAATGGTTCTTTGATTTTAATGTTAACCTTT
TTTAAATACAATACTGATAGTTAGAAAACTACTGTACTCTTTTGTTTTAGTGGAAAATAATAGA
TGTCTGTTCATGTGTTTAAGTGTTATAGCAAAAAGTACACATACGGTTAAGTTAATGAAAAAGT
TTTTGTTTCATCAGTGACAACAGACAAAAGTACTTCCTAGAGATTTGACTGTTGTAAGTAAGCT
ATGGAAAACAACTTGCACCACTAAGAGAAAGATAACATAGAACCATTCAGAAAACTGAAATTTA
GTAGTTTAAGGCTTCAAAGAAATGTCAACTTTTGATTCCATTCAATAAAGTACAAAACCAATTG
TATTTTTTATTACTTTTCATCTGAAACATTCCACATTTTAATCTGAGCCTTGCAGACTTTTCAT
TTGACTTTGGAAGCTGTTTCGGTTGCATTGCATTTTTAGAGAACTTCATTCATGTGAGATTGGA
ATTCAAATGCAGGTGCAGTTTTCTTTTAATGTCATGCTGTTTAGATGATAAGATATATTAAGTA
ATTGGCTTTAGATTTGTAATTTTTTTCCTCTGAGTTCCTGCTAGGTTTTGTATTCTAGTAGTCA
ATGTTATTTCAGTGAAATGTAAAAATATTACCGTTCTCTTTGACCAGTATTAATTTCTTGAGAA
CCTATTGCTTGTCACTTGAATCCTGTAGCTGTCAAACATCTCCGGTATAAGCAACATTTGATTT
TTGAAGTGTGTAAACCATCTATATTTTCAAGATGTAATTTTACATTTCTGCATTTTAAAAGTTT
GGCCATAATTCTAGAAGCACGCTTCTAATTCATGTACCTGCACATGTGACCTTTGTGAGCAGAA
ATTTGCATGTATAATCTGTGTTTACTTGTAACTCTCTGGTTATATACTGCTTATATCTGTGGAT
TCAAGTTACTGAAGTGAATACCAATAAAAAAAAAAACAACCTAGGCCATGTTGATTGGTTGGTT
AAACATGTTTGGAATGTTAACCAAAA

hide sequence

RefSeq Acc Id:

XM_063277175 ⟹ XP_063133245

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,437,730 - 27,474,421 (+)	NCBI

RefSeq Acc Id:

XM_063277176 ⟹ XP_063133246

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,437,837 - 27,474,421 (+)	NCBI

RefSeq Acc Id:

XM_063277177 ⟹ XP_063133247

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,438,185 - 27,474,421 (+)	NCBI

RefSeq Acc Id:

XM_063277178 ⟹ XP_063133248

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,437,899 - 27,474,421 (+)	NCBI

RefSeq Acc Id:

XM_063277179 ⟹ XP_063133249

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,438,185 - 27,474,421 (+)	NCBI

RefSeq Acc Id:

XM_063277180 ⟹ XP_063133250

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,428,191 - 27,474,421 (+)	NCBI

RefSeq Acc Id:

XM_063277181 ⟹ XP_063133251

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,437,886 - 27,474,421 (+)	NCBI

RefSeq Acc Id:

XM_063277182 ⟹ XP_063133252

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,437,868 - 27,467,258 (+)	NCBI

RefSeq Acc Id:

XM_063277183 ⟹ XP_063133253

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,438,183 - 27,467,258 (+)	NCBI

RefSeq Acc Id:

XM_063277184 ⟹ XP_063133254

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,438,183 - 27,467,258 (+)	NCBI

RefSeq Acc Id:

XM_063277185 ⟹ XP_063133255

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,437,758 - 27,467,258 (+)	NCBI

RefSeq Acc Id:

XM_063277186 ⟹ XP_063133256

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,437,784 - 27,467,258 (+)	NCBI

RefSeq Acc Id:

XM_063277187 ⟹ XP_063133257

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,437,734 - 27,474,421 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_062022	(Get FASTA)	NCBI Sequence Viewer
	XP_006254596	(Get FASTA)	NCBI Sequence Viewer
	XP_017456375	(Get FASTA)	NCBI Sequence Viewer
	XP_017456376	(Get FASTA)	NCBI Sequence Viewer
	XP_063133245	(Get FASTA)	NCBI Sequence Viewer
	XP_063133246	(Get FASTA)	NCBI Sequence Viewer
	XP_063133247	(Get FASTA)	NCBI Sequence Viewer
	XP_063133248	(Get FASTA)	NCBI Sequence Viewer
	XP_063133249	(Get FASTA)	NCBI Sequence Viewer
	XP_063133250	(Get FASTA)	NCBI Sequence Viewer
	XP_063133251	(Get FASTA)	NCBI Sequence Viewer
	XP_063133252	(Get FASTA)	NCBI Sequence Viewer
	XP_063133253	(Get FASTA)	NCBI Sequence Viewer
	XP_063133254	(Get FASTA)	NCBI Sequence Viewer
	XP_063133255	(Get FASTA)	NCBI Sequence Viewer
	XP_063133256	(Get FASTA)	NCBI Sequence Viewer
	XP_063133257	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB63955	(Get FASTA)	NCBI Sequence Viewer
	AAH62231	(Get FASTA)	NCBI Sequence Viewer
	AAI68723	(Get FASTA)	NCBI Sequence Viewer
	BAD90681	(Get FASTA)	NCBI Sequence Viewer
	EDL76258	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000026949
	ENSRNOP00000026949.3
GenBank Protein	P43244	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_062022 ⟸ NM_019149

- UniProtKB:

Q5DVW1 (UniProtKB/Swiss-Prot), O35833 (UniProtKB/Swiss-Prot), P43244 (UniProtKB/Swiss-Prot), A0A0G2JSR7 (UniProtKB/TrEMBL), A6J2X6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSKSFQQSSLGRDSQGHGRDLSAAGIGLLAAATQSLSMPASLGRMNQGTARLASLMNLGMSSSL
NQQGAHSALSSASTSSHNLQSIFNIGSRGPLPLSSQHRGDTDQASNILASFGLSARDLDELSRY
PEDKITPENLPQILLQLKRRRTEEGPTLSYGRDGRSATREPPYRVPRDDWEEKRHFRRDSFDDR
GPSLNPVLDYDHGSRSQESGYYDRMDYEDDRLRDGERCRDDSFFGETSHNYHKFDSEYERMGRG
PGPLQERSLFEKKRGAPPSSNIEDFHGLLPKGYPHLCSICDLPVHSNKEWSQHINGASHSRRCQ
LLLEIYPEWNPDNDTGHTMGDPFMLQQSTNPAPGILGPPPPSFHLGGPAVGPRGNLGAGNGNLQ
GPRHMQKGRVETSRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQ
AAVDYYTTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSA
VLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLV
LRIPNRGIDLLKKDKSRKRSYSPDGKESPSDKKSKTDGAQKTENPAEGKEQEEKSGEDGEKDTK
DDQTEQEPSMLLESEDELLVDEEEAAALLESGSSVGDETDLANLGDVSSDGKKEPSDKAVKKDA
SATSKKKLKKVDKIEELDQENEAALENGIKNEENTEPGAESAENADDPNKDASDNSDGQNDENK
EDYTIPDEYRIGPYQPNVPVGIDYVIPKTGFYCKLCSLFYTNEEVAKNTHCSSLPHYQKLKKFL
NKLAEERRQKKET

hide sequence

RefSeq Acc Id:	XP_006254596 ⟸ XM_006254534
- Peptide Label:	isoform X2
- UniProtKB:	Q5DVW1 (UniProtKB/Swiss-Prot), O35833 (UniProtKB/Swiss-Prot), P43244 (UniProtKB/Swiss-Prot), A0A0G2JSR7 (UniProtKB/TrEMBL), A6J2X6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKSFQQSSLGRDSQGHGRDLSAAGIGLLAAATQSLSMPASLGRMNQGTARLASLMNLGMSSSL NQQGAHSALSSASTSSHNLQSIFNIGSRGPLPLSSQHRGDTDQASNILASFGLSARDLDELSRY PEDKITPENLPQILLQLKRRRTEEGPTLSYGRDGRSATREPPYRVPRDDWEEKRHFRRDSFDDR GPSLNPVLDYDHGSRSQESGYYDRMDYEDDRLRDGERCRDDSFFGETSHNYHKFDSEYERMGRG PGPLQERSLFEKKRGAPPSSNIEDFHGLLPKGYPHLCSICDLPVHSNKEWSQHINGASHSRRCQ LLLEIYPEWNPDNDTGHTMGDPFMLQQSTNPAPGILGPPPPSFHLGGPAVGPRGNLGAGNGNLQ GPRHMQKGRVETSRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQ AAVDYYTTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSA VLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLV LRIPNRGIDLLKKDKSRKRSYSPDGKESPSDKKSKTDGAQKTENPAEGKEQEEKSGEDGEKDTK DDQTEQEPSMLLESEDELLVDEEEAAALLESGSSVGDETDLANLGDVSSDGKKEPSDKAVKKDA SATSKKKLKKVDKIEELDQENEAALENGIKNEENTEPGAESAENADDPNKDASDNSDGQNDENK EDYTIPDEYRIGPYQPNVPVGIDYVIPKTGFYCKLCSLFYTNEEVAKNTHCSSLPHYQKLKKFL NKLAEERRQKKET hide sequence

RefSeq Acc Id:	XP_017456375 ⟸ XM_017600886
- Peptide Label:	isoform X2
- UniProtKB:	Q5DVW1 (UniProtKB/Swiss-Prot), O35833 (UniProtKB/Swiss-Prot), P43244 (UniProtKB/Swiss-Prot), A0A0G2JSR7 (UniProtKB/TrEMBL), A6J2X6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKSFQQSSLGRDSQGHGRDLSAAGIGLLAAATQSLSMPASLGRMNQGTARLASLMNLGMSSSL NQQGAHSALSSASTSSHNLQSIFNIGSRGPLPLSSQHRGDTDQASNILASFGLSARDLDELSRY PEDKITPENLPQILLQLKRRRTEEGPTLSYGRDGRSATREPPYRVPRDDWEEKRHFRRDSFDDR GPSLNPVLDYDHGSRSQESGYYDRMDYEDDRLRDGERCRDDSFFGETSHNYHKFDSEYERMGRG PGPLQERSLFEKKRGAPPSSNIEDFHGLLPKGYPHLCSICDLPVHSNKEWSQHINGASHSRRCQ LLLEIYPEWNPDNDTGHTMGDPFMLQQSTNPAPGILGPPPPSFHLGGPAVGPRGNLGAGNGNLQ GPRHMQKGRVETSRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQ AAVDYYTTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSA VLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLV LRIPNRGIDLLKKDKSRKRSYSPDGKESPSDKKSKTDGAQKTENPAEGKEQEEKSGEDGEKDTK DDQTEQEPSMLLESEDELLVDEEEAAALLESGSSVGDETDLANLGDVSSDGKKEPSDKAVKKDA SATSKKKLKKVDKIEELDQENEAALENGIKNEENTEPGAESAENADDPNKDASDNSDGQNDENK EDYTIPDEYRIGPYQPNVPVGIDYVIPKTGFYCKLCSLFYTNEEVAKNTHCSSLPHYQKLKKFL NKLAEERRQKKET hide sequence

RefSeq Acc Id:	XP_017456376 ⟸ XM_017600887
- Peptide Label:	isoform X2
- UniProtKB:	Q5DVW1 (UniProtKB/Swiss-Prot), O35833 (UniProtKB/Swiss-Prot), P43244 (UniProtKB/Swiss-Prot), A0A0G2JSR7 (UniProtKB/TrEMBL), A6J2X6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKSFQQSSLGRDSQGHGRDLSAAGIGLLAAATQSLSMPASLGRMNQGTARLASLMNLGMSSSL NQQGAHSALSSASTSSHNLQSIFNIGSRGPLPLSSQHRGDTDQASNILASFGLSARDLDELSRY PEDKITPENLPQILLQLKRRRTEEGPTLSYGRDGRSATREPPYRVPRDDWEEKRHFRRDSFDDR GPSLNPVLDYDHGSRSQESGYYDRMDYEDDRLRDGERCRDDSFFGETSHNYHKFDSEYERMGRG PGPLQERSLFEKKRGAPPSSNIEDFHGLLPKGYPHLCSICDLPVHSNKEWSQHINGASHSRRCQ LLLEIYPEWNPDNDTGHTMGDPFMLQQSTNPAPGILGPPPPSFHLGGPAVGPRGNLGAGNGNLQ GPRHMQKGRVETSRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQ AAVDYYTTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSA VLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLV LRIPNRGIDLLKKDKSRKRSYSPDGKESPSDKKSKTDGAQKTENPAEGKEQEEKSGEDGEKDTK DDQTEQEPSMLLESEDELLVDEEEAAALLESGSSVGDETDLANLGDVSSDGKKEPSDKAVKKDA SATSKKKLKKVDKIEELDQENEAALENGIKNEENTEPGAESAENADDPNKDASDNSDGQNDENK EDYTIPDEYRIGPYQPNVPVGIDYVIPKTGFYCKLCSLFYTNEEVAKNTHCSSLPHYQKLKKFL NKLAEERRQKKET hide sequence

RefSeq Acc Id:

ENSRNOP00000026949 ⟸ ENSRNOT00000026949

RefSeq Acc Id:

ENSRNOP00000073436 ⟸ ENSRNOT00000083993

RefSeq Acc Id:	XP_063133250 ⟸ XM_063277180
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063133245 ⟸ XM_063277175
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063133257 ⟸ XM_063277187
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063133255 ⟸ XM_063277185
- Peptide Label:	isoform X3
- UniProtKB:	A6J2Y0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133256 ⟸ XM_063277186
- Peptide Label:	isoform X3
- UniProtKB:	A6J2Y0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133246 ⟸ XM_063277176
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063133252 ⟸ XM_063277182
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JSR7 (UniProtKB/TrEMBL), A6J2X6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133251 ⟸ XM_063277181
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063133248 ⟸ XM_063277178
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063133254 ⟸ XM_063277184
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JSR7 (UniProtKB/TrEMBL), A6J2X6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133253 ⟸ XM_063277183
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JSR7 (UniProtKB/TrEMBL), A6J2X6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133247 ⟸ XM_063277177
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063133249 ⟸ XM_063277179
- Peptide Label:	isoform X1

Protein Domains

Matrin-type RRM U1-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P43244-F1-model_v2	AlphaFold	P43244	1-845	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700708

Promoter ID:

EPDNEW_R11231

Type:

initiation region

Name:

Matr3_1

Description:

matrin 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	18	28,361,286 - 28,361,346	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:3052	AgrOrtholog
BioCyc Gene	G2FUF-7909	BioCyc
Ensembl Genes	ENSRNOG00000019875	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000026949.6	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:6921221	IMAGE-MGC_LOAD
InterPro	MATR3_RRM1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MATR3_RRM2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Matrin/U1-C_Znf_C2H2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Matrin/U1-like-C_Znf_C2H2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Nucleotide-bd_a/b_plait_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RRM_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:29150	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:72856	IMAGE-MGC_LOAD
NCBI Gene	29150	ENTREZGENE
PANTHER	MATRIN 3/NUCLEAR PROTEIN 220-RELATED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MATRIN-3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	RRM_5	UniProtKB/TrEMBL
PhenoGen	Matr3	PhenoGen
PROSITE	RRM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZF_MATRIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000019875	RatGTEx
SMART	RRM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZnF_U1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR	TC217434
UniProt	A0A0G2JSR7	ENTREZGENE, UniProtKB/TrEMBL
	A6J2X6	ENTREZGENE, UniProtKB/TrEMBL
	A6J2Y0	ENTREZGENE, UniProtKB/TrEMBL
	B5DEM0_RAT	UniProtKB/TrEMBL
	MATR3_RAT	UniProtKB/Swiss-Prot
	O35833	ENTREZGENE
	P43244	ENTREZGENE
	Q5DVW1	ENTREZGENE
	Q6P6H1_RAT	UniProtKB/TrEMBL
UniProt Secondary	O35833	UniProtKB/Swiss-Prot
	Q5DVW1	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-06-10	Matr3	matrin 3			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_domains	contains a highly acidic domain and a putative nuclear targeting signal sequence	69882

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM