Snora31 (small nucleolar RNA, H/ACA box 31) - Rat Genome Database

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Gene: Snora31 (small nucleolar RNA, H/ACA box 31) Mus musculus
Analyze
Symbol: Snora31
Name: small nucleolar RNA, H/ACA box 31
RGD ID: 2313454
MGI Page MGI
Description: ASSOCIATED WITH ENCEPHALOPATHY, ACUTE, INFECTION-INDUCED (HERPES-SPECIFIC), 10 (ortholog); INTERACTS WITH silver atom; silver(0); trovafloxacin
Type: snorna
RefSeq Status: PROVISIONAL
Previously known as: MBI-16; MBI-161
RGD Orthologs
Human
Rat
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391476,085,363 - 76,085,474 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1476,085,345 - 76,085,474 (+)EnsemblGRCm39 Ensembl
GRCm381475,847,923 - 75,848,034 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1475,847,905 - 75,848,034 (+)EnsemblGRCm38mm10GRCm38
MGSCv371476,247,730 - 76,247,841 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1473,349,262 - 73,349,373 (+)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1440.29NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:11387227  


Genomics

Comparative Map Data
Snora31
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391476,085,363 - 76,085,474 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1476,085,345 - 76,085,474 (+)EnsemblGRCm39 Ensembl
GRCm381475,847,923 - 75,848,034 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1475,847,905 - 75,848,034 (+)EnsemblGRCm38mm10GRCm38
MGSCv371476,247,730 - 76,247,841 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1473,349,262 - 73,349,373 (+)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1440.29NCBI
SNORA31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381345,337,480 - 45,337,609 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1345,337,480 - 45,337,609 (-)EnsemblGRCh38hg38GRCh38
GRCh371345,911,615 - 45,911,744 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361344,809,615 - 44,809,744 (-)NCBINCBI36Build 36hg18NCBI36
Celera1326,967,743 - 26,967,872 (-)NCBICelera
Cytogenetic Map13q14.13NCBI
HuRef1326,712,756 - 26,712,885 (-)NCBIHuRef
CHM1_11345,879,189 - 45,879,318 (-)NCBICHM1_1
T2T-CHM13v2.01344,557,727 - 44,557,856 (-)NCBIT2T-CHM13v2.0
Snora31
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81557,568,564 - 57,568,693 (+)NCBIGRCr8
mRatBN7.21551,159,220 - 51,159,349 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1551,159,220 - 51,159,349 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1557,894,100 - 57,894,229 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map15q11NCBI
LOC119865294
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha225,703,833 - 5,703,962 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0225,832,485 - 5,832,614 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1225,614,510 - 5,614,639 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0225,677,463 - 5,677,592 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0225,683,144 - 5,683,273 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Snora31
4 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:104
Interacting mature miRNAs:110
Transcripts:ENSMUST00000083213
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145654674590546941Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
11039527Ccc2_mcolitis susceptibility in the Collaborative Cross 2 (mouse)145991861294138217Mouse
1300666Fembm2_mfemoral bone morphometry 2 (mouse)Not determined146239746096397680Mouse
14747006Mancz12_mmandible centroid size 12 (mouse)1470071977104071977Mouse
10054475Ossc3_mosteosarcoma susceptibility 3 (mouse)Not determined1470863768104863926Mouse
1300551Lprm3_mlymphoproliferation modifier 3 (mouse)Not determined1471221224105221344Mouse
1301844Pgia29_mproteoglycan induced arthritis 29 (mouse)Not determined1474352296108352384Mouse
1558819Ossc2_mosteosarcoma susceptibility 2 (mouse)Not determined1474394976108395093Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000083213
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1476,085,345 - 76,085,474 (+)Ensembl
GRCm38.p6 Ensembl1475,847,905 - 75,848,034 (+)Ensembl
RefSeq Acc Id: NR_028481
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391476,085,363 - 76,085,474 (+)NCBI
GRCm381475,847,923 - 75,848,034 (+)ENTREZGENE
MGSCv371476,247,730 - 76,247,841 (+)RGD
Celera1473,349,262 - 73,349,373 (+)RGD
cM Map14 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000065147 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083213 ENTREZGENE
MGD MGI:3819500 ENTREZGENE
NCBI Gene 100303751 ENTREZGENE
PhenoGen Snora31 PhenoGen
RNAcentral URS000048F194 RNACentral